Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I21
(1151 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 288 6e-78
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 288 6e-78
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 277 1e-74
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 266 2e-71
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 259 3e-69
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 255 4e-68
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 31 2.0
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 29 6.2
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 29 6.2
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 288 bits (706), Expect = 6e-78
Identities = 129/216 (59%), Positives = 153/216 (70%)
Frame = +3
Query: 342 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 521
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 522 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXX 701
PFR+G + LVMC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 149
Query: 702 XXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVG 881
YYCGVGANKV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVG
Sbjct: 150 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVG 209
Query: 882 PSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKPV 989
P G+ GD LWVAR +L R+ EE+GVI +FD KP+
Sbjct: 210 PCEGIQMGDQLWVARYLLQRVAEEFGVIASFDCKPI 245
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 288 bits (706), Expect = 6e-78
Identities = 129/216 (59%), Positives = 153/216 (70%)
Frame = +3
Query: 342 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 521
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 522 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXX 701
PFR+G + LVMC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 152
Query: 702 XXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVG 881
YYCGVGANKV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVG
Sbjct: 153 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVG 212
Query: 882 PSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKPV 989
P G+ GD LWVAR +L R+ EE+GVI +FD KP+
Sbjct: 213 PCEGIQMGDQLWVARYLLQRVAEEFGVIASFDCKPI 248
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 277 bits (678), Expect = 1e-74
Identities = 119/235 (50%), Positives = 157/235 (66%)
Frame = +3
Query: 282 LSKTLLSRYNXLPLPADKXLATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 461
L + + + LP K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 462 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 641
QADG NSD YL P A++ DPF G ++LVMCDT + M+PT +N+R C E K D
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQ 131
Query: 642 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 821
+PWFG+EQEY+++D D YYCG+GA++ F R++VE HYR CL+AG
Sbjct: 132 QPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRAFGREVVETHYRACLHAG 191
Query: 822 VPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKP 986
+ I G+NAEV P QWEFQ+G +G+ GD LW+AR ILHR+ E++GV V+ DPKP
Sbjct: 192 ITIFGSNAEVTPGQWEFQIGTCLGIEMGDQLWMARYILHRVAEQFGVCVSLDPKP 246
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 266 bits (652), Expect = 2e-71
Identities = 116/235 (49%), Positives = 154/235 (65%)
Frame = +3
Query: 282 LSKTLLSRYNXLPLPADKXLATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 461
L + + + LP K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 462 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 641
QA+G NSD YL P A++ DPF +G+++LVMC+T M+PT +N+R +C K +
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131
Query: 642 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 821
PWFG+EQEY+++D D YYCGVGA++ F R++VE HYR CL+AG
Sbjct: 132 HPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRAFGREVVETHYRACLHAG 191
Query: 822 VPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKP 986
+ I GTNAEV P QWEFQ+G G+ GD LW+AR ILHR+ E++GV V+ DPKP
Sbjct: 192 INIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMARYILHRVAEQFGVCVSLDPKP 246
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 259 bits (634), Expect = 3e-69
Identities = 115/235 (48%), Positives = 154/235 (65%)
Frame = +3
Query: 282 LSKTLLSRYNXLPLPADKXLATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 461
L ++ ++ L K ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 462 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 641
QA G +SD YL P A Y DPF G + LVMCDT + M+PT +++R +C E + +D
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDT 131
Query: 642 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 821
PWFG+EQEY+++D D YYC VGA++ F R++VE HYR CL+AG
Sbjct: 132 RPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAG 191
Query: 822 VPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARXILHRLXEEYGVIVTFDPKP 986
+ I GTNAEV P QWEFQ+G G+ GD LW++R ILHR+ E++GV V+ DPKP
Sbjct: 192 LNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKP 246
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 255 bits (625), Expect = 4e-68
Identities = 108/214 (50%), Positives = 148/214 (69%)
Frame = +3
Query: 348 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 527
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 528 RRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXX 707
R G + + +C+T ++ +P +N R C + +K KD EPWFG+EQE+ LL +D
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNW 154
Query: 708 XXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPS 887
YYCGVG+++VF R ++EAHYR C+YAG+ I+G+N E MPSQ+E+QVGP
Sbjct: 155 PVNGFPAPQGPYYCGVGSDRVFGRHILEAHYRACMYAGIKISGSNVESMPSQFEYQVGPC 214
Query: 888 IGVHAGDDLWVARXILHRLXEEYGVIVTFDPKPV 989
G+ GD LWV+R ILHR+ E+YGV+ + DPKPV
Sbjct: 215 EGIEMGDQLWVSRYILHRICEDYGVVCSLDPKPV 248
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 647 GLIILAFVVSFLTTDAIVALCWLHVVFIRITHNEDVISSTEWILVNSTRYEVGIRIV 477
G I++ VVSF+TT V W VF T N + + I ST E+ ++ V
Sbjct: 27 GFILMIIVVSFITTALAVQTLWYKNVFPFCTKNLLLSAIVNGIFHQSTVAEIRLKTV 83
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 694 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 798
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 694 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 798
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,474,584
Number of Sequences: 27780
Number of extensions: 478362
Number of successful extensions: 1164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -