Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I20
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.33 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 576 PPXPXGXGVFXXGXNPPPPPP 514
           PP P   GV   G  PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 553 PPPPGXXGXGFGXPPXSPP 609
           PPPPG  G G   PP  PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 554 PXPXGXGGXVLGXPPXPPPKXPXXPGXXXXXXVSPPP 664
           P P      ++G PP PPP  P   G        PPP
Sbjct: 748 PIPVPPPAPIMGGPP-PPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 588 PKTXPPXPXGXGVFXXGXNPPPPPP 514
           P   PP P   G       PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.151    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,169
Number of Sequences: 5004
Number of extensions: 16676
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)