Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I19
         (1223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...   117   4e-27
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.99 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   5.3  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   7.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.3  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   9.3  

>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score =  117 bits (281), Expect = 4e-27
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +3

Query: 273 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 452
           MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1   MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 453 NYSPLEK 473
            Y+PL K
Sbjct: 61  CYNPLSK 67


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 737 PXLXGGGXPXPPRXFFXXGPPXPPXRGXP 651
           P + G   P PP  F   G P PP  G P
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPLPPIPGAP 512


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPP 666
           P   P  P  P + G   P PP      GPP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPP 666
           PP  P     P       P PP      GPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 937 GPPKXXPPXPXGGGGXXXXXXXPPXPPPXA 848
           GPP   PP    G G       PP PPP A
Sbjct: 760 GPPPPPPPPGVAGAGPP-----PPPPPPPA 784


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 855 GGGXGGXXXXXXXPPP-PXGXGGXXFGG 935
           GGG GG       PPP P G GG  FGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG--FGG 212


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 379 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 278
           S +SPS  S  S P    HL P+T PH     G+
Sbjct: 2   SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 267 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALD-----VLGLKRYCCRRMLLGHV 431
           NK +   +C     V+ N  +A  G+   +   GD L+     +LGL     RR LLG +
Sbjct: 178 NKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKI 237

Query: 432 DL 437
           D+
Sbjct: 238 DI 239


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -1

Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
           PP  P  P  P L  G    PP        P PP    P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPP---LPPAAPAPPPAPAPAP 484


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 461 GIIQEFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIR 351
           G+I E  NE+H+S+  SS   S   +D++ I F   R
Sbjct: 463 GLI-ESTNELHLSDSESSETSSSSEEDMEFIPFSARR 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,605
Number of Sequences: 5004
Number of extensions: 61206
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)