Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I19
(1223 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical ... 132 6e-31
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 33 0.31
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.31
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.31
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.31
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.31
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 31 2.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 8.8
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 8.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 8.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 8.8
>AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical
protein Y37E3.3 protein.
Length = 67
Score = 132 bits (318), Expect = 6e-31
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = +3
Query: 273 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 452
MIIP+RCFTCGKVIG+KWE YLG LQ++Y+EGDALD LGL+RYCCRRMLL HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 453 NYSPLEK 473
NY PLEK
Sbjct: 61 NYHPLEK 67
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +1
Query: 652 GXPLXGGXGGPXXKKXLGGXGXPPPXRXGKXGXXGEXG 765
G P GG GGP GG G PPP + G G G G
Sbjct: 182 GPPGHGGQGGPPGH---GGMGGPPPGQGGPGGPGGPGG 216
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +1
Query: 652 GXPLXGGXGGPXXKKXLGGXGXPPPXRXGKXGXXGEXG 765
G P GG GGP GG G PPP + G G G G
Sbjct: 462 GPPGHGGQGGPPGH---GGMGGPPPGQGGPGGPGGPGG 496
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
PP P P L G G P PP G P PP G P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPP---AAGSPPPPRTGSPPP 274
Score = 31.9 bits (69), Expect = 0.95
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -2
Query: 1057 GXXPXXXGXXXXPPXGGGXXXXPXXXXXGXXGXXXXGXXXGPPKXXPPXPXGGGGXXXXX 878
G P PP G P G G PP PP P GG
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293
Query: 877 XXPPXPPP 854
P PPP
Sbjct: 294 AGSPPPPP 301
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = -1
Query: 872 PXPXPPXGXXKKXXXXXXXXXVFXXXXXXXXXXXXPPXSPXXPFFPXLXGGGXPXPPRXF 693
P P PP G PP P P GG P PPR
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP--PPPPAGGSPPPPRA- 294
Query: 692 FXXGPPXPPXRGXP 651
PP PP RG P
Sbjct: 295 -GSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
PP P P L G G P PP G P PP G P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPP---AAGSPPPPRTGSPPP 295
Score = 31.9 bits (69), Expect = 0.95
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -2
Query: 1057 GXXPXXXGXXXXPPXGGGXXXXPXXXXXGXXGXXXXGXXXGPPKXXPPXPXGGGGXXXXX 878
G P PP G P G G PP PP P GG
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314
Query: 877 XXPPXPPP 854
P PPP
Sbjct: 315 AGSPPPPP 322
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = -1
Query: 872 PXPXPPXGXXKKXXXXXXXXXVFXXXXXXXXXXXXPPXSPXXPFFPXLXGGGXPXPPRXF 693
P P PP G PP P P GG P PPR
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP--PPPPAGGSPPPPRA- 315
Query: 692 FXXGPPXPPXRGXP 651
PP PP RG P
Sbjct: 316 -GSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
PP P P L G G P PP G P PP G P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPP---AAGSPPPPRTGSPPP 280
Score = 31.9 bits (69), Expect = 0.95
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -2
Query: 1057 GXXPXXXGXXXXPPXGGGXXXXPXXXXXGXXGXXXXGXXXGPPKXXPPXPXGGGGXXXXX 878
G P PP G P G G PP PP P GG
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299
Query: 877 XXPPXPPP 854
P PPP
Sbjct: 300 AGSPPPPP 307
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = -1
Query: 872 PXPXPPXGXXKKXXXXXXXXXVFXXXXXXXXXXXXPPXSPXXPFFPXLXGGGXPXPPRXF 693
P P PP G PP P P GG P PPR
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP--PPPPAGGSPPPPRA- 300
Query: 692 FXXGPPXPPXRGXP 651
PP PP RG P
Sbjct: 301 -GSPPPPPPPRGSP 313
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
PP P P + GG P PP PP PP G P P
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPP-PMMGGIPPPPPMFGAPPP 116
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXPXP 645
PP P P GG P PP F PP PP G P
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -3
Query: 1050 PPXXGGXPXXPPXGGGXXXXXXXXXXXXXXXXXXGXGXXPQXPXPXXP 907
P GG P PP GG G G PQ P P P
Sbjct: 88 PMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTP 135
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical protein
F53F1.4 protein.
Length = 105
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +3
Query: 858 GGXGGXXXXXXXPPPPXGXGGXXFGGPXXXPXXXXPXXP-XXXXXGXXXXPPPXGG 1022
GG GG PPPP G GG P P P G P P GG
Sbjct: 22 GGGGGCGCAPPPPPPPCGCGGPSL-PPLQLPRFELPRLSLPSFGGGGCGGPAPCGG 76
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRG 657
PP P P + GG P PP PP PP G
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/72 (30%), Positives = 22/72 (30%)
Frame = -3
Query: 1056 GXPPXXGGXPXXPPXGGGXXXXXXXXXXXXXXXXXXGXGXXPQXPXPXXPXGGGGXXXXX 877
G PP GG P PP GG G P P P GG
Sbjct: 718 GLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CP 769
Query: 876 XXXPXPPPGPXK 841
P PPPG K
Sbjct: 770 PPPPPPPPGGFK 781
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGG---GXPXPPRXFFXXGPPXPPXRGXPXP 645
PP S P P GG P PP F GPP PP G P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.1 bits (62), Expect = 6.7
Identities = 27/108 (25%), Positives = 27/108 (25%)
Frame = +2
Query: 716 PPPXKGXEKXXXLGKXGGPXXXXXPXXPXXKPXXXPXXXXFFXXGPGGGXGXXXXXXXXP 895
PPP K G P P P P GG P
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 896 PPPXGXXGXGFWGXXPXPXXXXXXXXXXXXXXXXXXPPPXGGXXGXPP 1039
PPP G G P P PPP GG G PP
Sbjct: 746 PPPGGLPPIS--GGPPPPPPPPGGCPPPPP------PPPPGGFKGGPP 785
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFF-----XXGPPXPPXRGXPXP 645
PP P P + GG P PP PP PP G P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRG 657
PP P P + GG P PP PP PP G
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/72 (30%), Positives = 22/72 (30%)
Frame = -3
Query: 1056 GXPPXXGGXPXXPPXGGGXXXXXXXXXXXXXXXXXXGXGXXPQXPXPXXPXGGGGXXXXX 877
G PP GG P PP GG G P P P GG
Sbjct: 718 GLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CP 769
Query: 876 XXXPXPPPGPXK 841
P PPPG K
Sbjct: 770 PPPPPPPPGGFK 781
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGG---GXPXPPRXFFXXGPPXPPXRGXPXP 645
PP S P P GG P PP F GPP PP G P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.1 bits (62), Expect = 6.7
Identities = 27/108 (25%), Positives = 27/108 (25%)
Frame = +2
Query: 716 PPPXKGXEKXXXLGKXGGPXXXXXPXXPXXKPXXXPXXXXFFXXGPGGGXGXXXXXXXXP 895
PPP K G P P P P GG P
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 896 PPPXGXXGXGFWGXXPXPXXXXXXXXXXXXXXXXXXPPPXGGXXGXPP 1039
PPP G G P P PPP GG G PP
Sbjct: 746 PPPGGLPPIS--GGPPPPPPPPGGCPPPPP------PPPPGGFKGGPP 785
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFF-----XXGPPXPPXRGXPXP 645
PP P P + GG P PP PP PP G P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRG 657
PP P P + GG P PP PP PP G
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/72 (30%), Positives = 22/72 (30%)
Frame = -3
Query: 1056 GXPPXXGGXPXXPPXGGGXXXXXXXXXXXXXXXXXXGXGXXPQXPXPXXPXGGGGXXXXX 877
G PP GG P PP GG G P P P GG
Sbjct: 301 GLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG----CP 352
Query: 876 XXXPXPPPGPXK 841
P PPPG K
Sbjct: 353 PPPPPPPPGGFK 364
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGG---GXPXPPRXFFXXGPPXPPXRGXPXP 645
PP S P P GG P PP F GPP PP G P
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Score = 29.1 bits (62), Expect = 6.7
Identities = 27/108 (25%), Positives = 27/108 (25%)
Frame = +2
Query: 716 PPPXKGXEKXXXLGKXGGPXXXXXPXXPXXKPXXXPXXXXFFXXGPGGGXGXXXXXXXXP 895
PPP K G P P P P GG P
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
Query: 896 PPPXGXXGXGFWGXXPXPXXXXXXXXXXXXXXXXXXPPPXGGXXGXPP 1039
PPP G G P P PPP GG G PP
Sbjct: 329 PPPGGLPPIS--GGPPPPPPPPGGCPPPPP------PPPPGGFKGGPP 368
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFF-----XXGPPXPPXRGXPXP 645
PP P P + GG P PP PP PP G P P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 858 GGXGGXXXXXXXPPPPXGXGGXXFGG 935
GG GG PPPP GG GG
Sbjct: 43 GGGGGCGGGCAPPPPPPACGGGCGGG 68
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 858 GGXGGXXXXXXXPPPPXGXGGXXFGG 935
GG GG PPPP GG GG
Sbjct: 100 GGGGGCGGGCAPPPPPPACGGGCGGG 125
Score = 24.6 bits (51), Expect(2) = 3.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 904 GGGGXXXXXXXPPXPPP 854
GGGG PP PPP
Sbjct: 100 GGGGGCGGGCAPPPPPP 116
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 1012 GGGXXXXPXXXXXGXXGXXXXGXXXGPPKXXPPXPXGGGG 893
GGG G G G PP PP P GGG
Sbjct: 28 GGGGCGGGCGGGGGCGGGGGCGGGCAPP---PPPPACGGG 64
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPPXRGXP 651
PP P P P G P PP GPP PP R P
Sbjct: 243 PPGPPGPPGPPTRRPPGPPGPPTRR-PPGPPGPPTRRPP 280
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXG--PPXPPXR 660
PP P F P GG P PP G PP PP R
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 354
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 767 PPXSPXXPFFPXLXGGGXPXPPRXFFXXG--PPXPPXR 660
PP P F P GG P PP G PP PP R
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 364
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 764 PXSPXXPFFPXLXGG-GXPXPPRXFFXXGPPXPP-XRGXPXP 645
P +P P P G G P PP GPP PP +G P P
Sbjct: 214 PLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 255
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 764 PXSPXXPFFPXLXGG-GXPXPPRXFFXXGPPXPP-XRGXPXP 645
P +P P P G G P PP GPP PP +G P P
Sbjct: 209 PLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 250
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 764 PXSPXXPFFPXLXGG-GXPXPPRXFFXXGPPXPP-XRGXPXP 645
P +P P P G G P PP GPP PP +G P P
Sbjct: 209 PLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 250
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +3
Query: 642 PGXGXPPXGGVXGPXXEKXPXGXGXPPPXKXGKKXXXWGXXGXXXXXGXP 791
PG PP P P G G PPP G G G P
Sbjct: 387 PGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPP 436
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 764 PXSPXXPFFPXLXGGGXPXPPRXFFXXGPPXPP 666
P P P L G P PP GPP PP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,989,737
Number of Sequences: 27780
Number of extensions: 500703
Number of successful extensions: 1940
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -