Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I17
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...   110   4e-25
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    40   7e-04
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    29   1.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   6.8  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   9.0  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.0  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score =  110 bits (264), Expect = 4e-25
 Identities = 73/197 (37%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
 Frame = +1

Query: 292 GLKTSEXAXFYALSRKF-KPFSNEGKPLVVQFTVKHEQXIDCGGGYLKVFDCKLEQKDMH 468
           GL   + A  +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+   +    +M 
Sbjct: 91  GLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMS 149

Query: 469 GETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIV 627
               Y IMFGPD CG   + VH IF +K        + HL  +         T+LYTLIV
Sbjct: 150 NSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIV 208

Query: 628 KPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW--XXXXXXXXXXXXX 795
           KPD T+EV I+ + V  G L  D+    LPP +I DPE  KP DW               
Sbjct: 209 KPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPD 268

Query: 796 XXXXXXXXHIPDPDATK 846
                    IPDPDA K
Sbjct: 269 DWDEDAPRMIPDPDAVK 285



 Score = 35.1 bits (77), Expect = 0.019
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 694 DWDFLPPKKIKDPEAKKPEDW 756
           DWD   P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289



 Score = 31.5 bits (68), Expect = 0.24
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 694 DWDFLPPKKIKDPEAKKPEDW 756
           DW    P  I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
 Frame = +1

Query: 367 PLVVQFTVKHEQXIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 546
           P+V+ F VK  +   CG  Y+ +   +   K++  E P  I FG   CG        I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161

Query: 547 YKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKK 720
           Y GK   HL         +  T +YTL+++ + T  +  D   V +GD+  ++   P K 
Sbjct: 162 YDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTGDVGTNFFHSPTKW 220

Query: 721 I 723
           I
Sbjct: 221 I 221


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 544 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 720
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES   E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 721 IKDPEAKKPED 753
           +K  +   P+D
Sbjct: 197 MKQKKG-GPKD 206


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +1

Query: 415 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 582
           G  +LKV +   E   M  ETP +I++   +   G+      +H     K +    KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673

Query: 583 R--CKDDVYTH 609
              CK+D + +
Sbjct: 674 LLFCKEDEFLY 684


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 427 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 606
           +K+F   + +K  +  +P+E+M  P +  P             K H  + ++R  +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204

Query: 607 HLYTLIVKP 633
           +L   ++KP
Sbjct: 205 YLLNFLLKP 213


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 673 ESGDLEADWDFLPPKKIKDPEAKKPEDW 756
           E   L+     LP  + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,882,478
Number of Sequences: 5004
Number of extensions: 76994
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)