Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I17
(1191 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 280 1e-75
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 280 1e-75
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 100 2e-21
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 2.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 2.8
U55373-9|AAV58870.1| 648|Caenorhabditis elegans Hypothetical pr... 30 3.7
U55373-8|AAD34666.1| 805|Caenorhabditis elegans Hypothetical pr... 30 3.7
U55373-7|AAC25890.2| 890|Caenorhabditis elegans Hypothetical pr... 30 3.7
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 280 bits (687), Expect = 1e-75
Identities = 132/236 (55%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Frame = +1
Query: 235 FGKFKLTAGKFFSXPXXXKGLKTSEXAXFYALSRKF-KPFSNEGKPLVVQFTVKHEQXID 411
FG FKL+AGKFF +G++TS+ A FY+ + KF K FSN+GK LV+Q+TVKHEQ ID
Sbjct: 41 FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGID 100
Query: 412 CGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK 591
CGGGY+KV + D HGETPY +MFGPDICGP T++VHVI +YKG+N LIKK+I CK
Sbjct: 101 CGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYKGENKLIKKEITCK 159
Query: 592 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWXXXXX 771
D THLYTLI+ DNTYEV ID E ++G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 160 SDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREY 219
Query: 772 XXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXXIDNPXYKGVWAPKQI 939
HIPDPDA K IDNP YKG W PKQI
Sbjct: 220 IDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQI 275
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 903 PXLQGRLGTKTD*XPXYKGPWVHPEIDN 986
P +G K P YKG W+HPEI+N
Sbjct: 264 PEYKGEWKPKQIKNPAYKGKWIHPEIEN 291
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 280 bits (687), Expect = 1e-75
Identities = 132/236 (55%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Frame = +1
Query: 235 FGKFKLTAGKFFSXPXXXKGLKTSEXAXFYALSRKF-KPFSNEGKPLVVQFTVKHEQXID 411
FG FKL+AGKFF +G++TS+ A FY+ + KF K FSN+GK LV+Q+TVKHEQ ID
Sbjct: 41 FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGID 100
Query: 412 CGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK 591
CGGGY+KV + D HGETPY +MFGPDICGP T++VHVI +YKG+N LIKK+I CK
Sbjct: 101 CGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYKGENKLIKKEITCK 159
Query: 592 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWXXXXX 771
D THLYTLI+ DNTYEV ID E ++G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 160 SDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREY 219
Query: 772 XXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXXXXXIDNPXYKGVWAPKQI 939
HIPDPDA K IDNP YKG W PKQI
Sbjct: 220 IDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQI 275
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 903 PXLQGRLGTKTD*XPXYKGPWVHPEIDN 986
P +G K P YKG W+HPEI+N
Sbjct: 264 PEYKGEWKPKQIKNPAYKGKWIHPEIEN 291
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 100 bits (239), Expect = 2e-21
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Frame = +1
Query: 292 GLKTSEXAXFYALSRKFK-PFSNEGKPLVVQFTVKHEQXIDCGGGYLKVFD--CKLEQKD 462
GL A +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ + + +
Sbjct: 111 GLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLAN 170
Query: 463 MHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDVYTHL 612
+T Y IMFGPD CG T KVH+IF YK + + DD THL
Sbjct: 171 FQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHL 229
Query: 613 YTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDW 756
+TL+VKP Y V +D + + G++ +D PPK+I D KP DW
Sbjct: 230 FTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDW 279
Score = 35.1 bits (77), Expect = 0.098
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 625 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 756
VKPD+ E + E+ DW+ + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 658 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 756
+N + ES DWD P+ + D A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 2.8
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 556 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 678
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 2.8
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 556 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 678
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>U55373-9|AAV58870.1| 648|Caenorhabditis elegans Hypothetical
protein F26F12.3c protein.
Length = 648
Score = 29.9 bits (64), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 261 SSSQFKLSKCFDLGAHWTPNC 199
++++F S C+ G HW P C
Sbjct: 400 NTNEFNTSSCYSCGIHWCPKC 420
>U55373-8|AAD34666.1| 805|Caenorhabditis elegans Hypothetical
protein F26F12.3b protein.
Length = 805
Score = 29.9 bits (64), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 261 SSSQFKLSKCFDLGAHWTPNC 199
++++F S C+ G HW P C
Sbjct: 557 NTNEFNTSSCYSCGIHWCPKC 577
>U55373-7|AAC25890.2| 890|Caenorhabditis elegans Hypothetical
protein F26F12.3a protein.
Length = 890
Score = 29.9 bits (64), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 261 SSSQFKLSKCFDLGAHWTPNC 199
++++F S C+ G HW P C
Sbjct: 642 NTNEFNTSSCYSCGIHWCPKC 662
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,207,522
Number of Sequences: 27780
Number of extensions: 460397
Number of successful extensions: 1229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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