Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I16
(1219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 161 2e-40
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 97 4e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 92 1e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 89 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 75 2e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 75 3e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 66 7e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 2e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 65 2e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 64 5e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 63 7e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 3e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 8e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 1e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 55 2e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 55 2e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 4e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 0.002
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.020
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 161 bits (391), Expect = 2e-40
Identities = 91/208 (43%), Positives = 125/208 (60%)
Frame = +1
Query: 298 QLALAIQRXAPXSPLYSVKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQX 477
++ LA + P SPL+SVK+F L L P LLKG+ + F PSKIQ +
Sbjct: 96 RVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRN 155
Query: 478 XXAQSQSGTGKTAAFVLAXLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIK 657
QSQSGTGKTAAF L LSRVD++ PQ +CL+P+ ELA Q +V +M K+ E+K
Sbjct: 156 MIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY-TEVK 214
Query: 658 LKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGH 837
+ ++ + +P+G+KI I+IGTPG + D +K D IKVFVLDEAD M+++QG
Sbjct: 215 TAFGIK-DSVPKGAKIDAQIVIGTPGTVMDL-MKRRQLDARDIKVFVLDEADNMLDQQGL 272
Query: 838 QXQCIRIHKCLXSTCQMMFFSATYGTAV 921
Q +RI L Q++ FSAT+ V
Sbjct: 273 GDQSMRIKHLLPRNTQIVLFSATFSERV 300
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 930 AEIMVSNPIIIRLLREEESLDNIKQYYVSAKC-RXKYXAXVXLWCIKMGXQYFCXXKKXN 1106
AE N IRL EE S++ IKQ Y+ + KY V L+ + Q KK +
Sbjct: 304 AERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKD 363
Query: 1107 XCXKI 1121
+I
Sbjct: 364 TAEEI 368
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 97.1 bits (231), Expect = 4e-21
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +1
Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
+ TF ++L P LL+G+ A GF PS IQ + AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 529 AXLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS--- 699
+ L ++D++ Q L L+PT ELA Q +V + ++ +A G L R
Sbjct: 76 SVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLM-NVEC-HACIGGTLVRDDMAA 133
Query: 700 -KITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXS 876
+ H+++GTPG++ D ++ +++FVLDEAD M++R G + Q I + L
Sbjct: 134 LQAGVHVVVGTPGRVHDM-IQRRALPTDAVQMFVLDEADEMLSR-GFKDQIYDIFQLLPP 191
Query: 877 TCQMMFFSATYGTAVMQL 930
T Q++ SAT V+++
Sbjct: 192 TAQVVLLSATMPQDVLEV 209
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 92.3 bits (219), Expect = 1e-19
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 3/198 (1%)
Frame = +1
Query: 346 SVKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFV 525
+V +F ++L +LL+G+ A G+ PS +Q + AQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 526 LAXLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 705
+ L +D + Q L LSPT ELA+Q V + ++ + G + K
Sbjct: 77 IGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVGNDIKK 135
Query: 706 TD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXS 876
D H++ GTPG++ D ++ +K+ +LDEAD ++N QG + Q I++ L
Sbjct: 136 LDYGQHVVSGTPGRVTDM-IRRRNLRTRNVKMLILDEADELLN-QGFKEQIYDIYRYLPP 193
Query: 877 TCQMMFFSATYGTAVMQL 930
Q++ SAT V+++
Sbjct: 194 GTQVVVVSATLPQDVLEM 211
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 945 SNPIIIRLLREEESLDNIKQYYVSAK 1022
+NP+ I + R+E +L+ +KQY+++ +
Sbjct: 217 TNPVRILVKRDELTLEGLKQYFIAVE 242
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 88.6 bits (210), Expect = 2e-18
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Frame = +1
Query: 358 FXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAXL 537
F +L LL G+ GF PS IQ + A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 538 SRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI---- 705
+VD+ K Q L L PT ELA+QT +V + K +K+ G L R I
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTL-RDDIIRLND 161
Query: 706 TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMIN 825
T HI++GTPG++ D K G+ D + FV+DEAD +++
Sbjct: 162 TVHIVVGTPGRVLDLAGK-GVADFSECTTFVMDEADKLLS 200
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 75.4 bits (177), Expect = 2e-14
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Frame = +1
Query: 355 TFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAX 534
+F +++L +LKG+ GF P++IQ + + +G+GKTAAF++
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 535 LSRVDSN-KXYP--QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP---RG 696
L R+ K P +VL L PT ELA+Q VA K+A F +I + + G L +
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFT-DIMVCLCIGGLSLKLQEQE 376
Query: 697 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXS 876
+ I+I TPG+ D F + I++ V+DEAD M+ G + I +
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML-EDGFADELNEIIQACPK 435
Query: 877 TCQMMFFSATYGTAVMQLLR 936
+ Q M FSAT V L+R
Sbjct: 436 SRQTMLFSATMTDKVDDLIR 455
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 74.5 bits (175), Expect = 3e-14
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 6/194 (3%)
Frame = +1
Query: 373 LXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAXLSRVDS 552
L P LL+ + GF PS++Q Q++SG GKTA FVL+ L +++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTD--VLCQAKSGMGKTAVFVLSTLQQIEP 115
Query: 553 NKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI------TDH 714
VL L T ELA Q A+ +K+ P+++ G + + + + H
Sbjct: 116 VDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPH 175
Query: 715 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXSTCQMMF 894
I++ TPG++ + V+ + + +K FVLDE D ++ + + + Q+M
Sbjct: 176 IVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMM 234
Query: 895 FSATYGTAVMQLLR 936
FSAT + + +
Sbjct: 235 FSATLSNEIRPICK 248
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 66.5 bits (155), Expect = 7e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 10/205 (4%)
Frame = +1
Query: 346 SVKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFV 525
S KTF +L P L + + F P+ +Q + AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG--KDLVAQARTGSGKTAAYL 69
Query: 526 LAXLS------RVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-IK-LKYAVRGE 681
+ L ++D N+ L L PT ELA Q V K+ FC + I+ + A
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 682 ELPRGSKITD--HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIR 855
+ + + D I+I TP + V G+ + K+K V+DEAD+M++ G+
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCV-VHVASGVLPLDKLKFLVIDEADLMLS-FGYNEDMKT 187
Query: 856 IHKCLXSTCQMMFFSATYGTAVMQL 930
+ + L Q SAT + L
Sbjct: 188 LSRSLPRGTQSFLMSATLSKNIASL 212
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 65.3 bits (152), Expect = 2e-11
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 10/206 (4%)
Frame = +1
Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
V TF +LK V GF AP+ IQ S +G+GKT ++ L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGI--SATGSGKTLSYCL 178
Query: 529 AXLSRVDSNKXY-----PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPR 693
+ +++ P VL L+PT ELA+Q + + KF +++ +PR
Sbjct: 179 PAIVHINAQPLLSPGDGPIVLVLAPTRELAVQ---IQQECTKFGKSSRIRNTCVYGGVPR 235
Query: 694 GSKITD-----HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRI 858
G +I D I I TPG++ D + ++ ++ VLDEAD M++ G + Q +I
Sbjct: 236 GPQIRDLIRGVEICIATPGRLLDM-LDSNKTNLRRVTYLVLDEADRMLD-MGFEPQIRKI 293
Query: 859 HKCLXSTCQMMFFSATYGTAVMQLLR 936
+ Q + FSAT+ V +L R
Sbjct: 294 VDQIRPDRQTVMFSATWPKEVQRLAR 319
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.3 bits (152), Expect = 2e-11
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 5/211 (2%)
Frame = +1
Query: 289 VASQLALAIQRXAPXSPLYSVKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXX 468
+AS+L + +R F ++ L LL+ + GF AP+ IQ
Sbjct: 48 IASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG- 106
Query: 469 XQXXXAQSQSGTGKTAAFVLAXLSRVDSN--KXYPQVLCLSPTYELAIQTGEVAAKMAKF 642
+ +++G+GKTAAFV+ + + S + L LSP ELA+QT +V +K
Sbjct: 107 -RDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK- 164
Query: 643 CPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 813
+++ V G L + I++ TPG+ V+ + ++ I+ V DEAD
Sbjct: 165 GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKL-ELSSIEYVVFDEAD 223
Query: 814 VMINRQGHQXQCIRIHKCLXSTCQMMFFSAT 906
+ G Q I L ++ Q + FSAT
Sbjct: 224 RLF-EMGFAAQLTEILHALPTSRQTLLFSAT 253
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 63.7 bits (148), Expect = 5e-11
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Frame = +1
Query: 490 SQSGTGKTAAF---VLAXLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 660
+++G+GKT AF L L+ + NK P+VL +SPT ELAIQT E + + +K
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ-GTNLKA 267
Query: 661 KYAVRG---EELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ 831
G E R +K ++IGTPG++ D + G D ++ VLDEAD M++
Sbjct: 268 VVVYGGAPKSEQARAAK-NASVIIGTPGRLLDL-INDGSIDCSQVGYLVLDEADRMLDTG 325
Query: 832 GHQ-XQCIRIH---KCLXSTCQMMFFSATYGTAVMQL 930
Q + I H + Q +FFSAT+ +V L
Sbjct: 326 FEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRAL 362
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.3 bits (147), Expect = 7e-11
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 8/204 (3%)
Frame = +1
Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
++ F L L N+ K + GF ++IQ + +++G+GKT AF++
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLI 145
Query: 529 AXLSRVDSNKXYPQ----VLCLSPTYELAIQTGEVAAKMAKFCPE---IKLKYAVRGEEL 687
+ + + K P+ V+ +SPT ELA+Q VA ++ K+ + I + A R E
Sbjct: 146 PTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEA 205
Query: 688 PRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKC 867
+ K + +L+ TPG++ D F ++ V+DEAD I G + + +I K
Sbjct: 206 DKLVKGVN-LLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD-RILEIGFEDEMRQIMKI 263
Query: 868 LXS-TCQMMFFSATYGTAVMQLLR 936
L S Q + FSAT T V L R
Sbjct: 264 LPSENRQTLLFSATQTTKVEDLAR 287
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 60.9 bits (141), Expect = 3e-10
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Frame = +1
Query: 487 QSQSGTGKTAAFVLAXLS-------RVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFC 645
Q+++GTGKT AF+L R++S+K + + LSPT ELA+Q E A K+ +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVI--LSPTRELALQIFEEARKLT-YG 138
Query: 646 PEIKLKYAVRGEELPRGSKI----TDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEAD 813
I++ YA+ G R ++LI TPG++ D + + F+LDEAD
Sbjct: 139 TGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEAD 198
Query: 814 VMINRQGHQXQCIRIHKCLXST-CQMMFFSATYGTAVMQLLR 936
+++ G + IH+ + +T + + FSAT V + R
Sbjct: 199 RLMD-MGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFR 239
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 56.4 bits (130), Expect = 8e-09
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 3/198 (1%)
Frame = +1
Query: 352 KTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLA 531
KTF L + L + GF P+ IQ AQ+ G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQT--GSGKTAAFALP 103
Query: 532 XLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 711
+ + +N + L+PT ELA Q E + ++ V G ++ +
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDMVTQAVALS 162
Query: 712 ---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXSTC 882
H+L+ TPG++ D F + +K ++DEAD +++ +I K +
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHER 221
Query: 883 QMMFFSATYGTAVMQLLR 936
+ + FSAT + V +L R
Sbjct: 222 RTLLFSATMTSKVEKLQR 239
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 1e-08
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)
Frame = +1
Query: 352 KTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLA 531
K+F L + P L+ + A P+ IQ + +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 532 XLSRVDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGS-- 699
+ + + L L+PT ELAIQ E + A + LK+A V G ++ R S
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDE---QFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 700 -KITDHILIGTPGKMFDWGVKFG---MFDMGKIKVFVLDEADVMINR--QGHQXQCIRIH 861
H+++ TPG++ D G + + +IK V+DEAD +++ C +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 862 KCLXSTCQMMFFSATYGTAVMQL 930
Q + F+AT A+ QL
Sbjct: 182 PASEDR-QTLLFTATVTDAIRQL 203
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 55.2 bits (127), Expect = 2e-08
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Frame = +1
Query: 490 SQSGTGKTAAFVLAXLSRVDSNKXYPQ----VLCLSPTYELAIQTGEVAAKMAK---FCP 648
+++G+GKT AF++ + + K L +SPT ELAIQT E K+ + F
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 649 EIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR 828
+ + EE R S++ +IL+ TPG++ + FD +++ +LDEAD +++
Sbjct: 143 GLIIGGNNYKEEKERLSRM--NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD- 199
Query: 829 QGHQXQCIRIHKCLXSTCQMMFFSATYGTAVMQLLR 936
G + I L Q M FSAT +V L R
Sbjct: 200 MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLAR 235
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 54.8 bits (126), Expect = 2e-08
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 10/206 (4%)
Frame = +1
Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
V + L P +L + GF P IQ ++ +G+GKT AF +
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFD--IIGKADTGSGKTLAFGI 178
Query: 529 AXLSRVDSN--KXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK 702
L N Y Q L ++PT ELA Q + ++ K P I++ G + + +
Sbjct: 179 PILEHCLRNVDAKYVQALVVAPTRELAHQICQ-HFELIKPSPNIRVMSITGGLAVQKQQR 237
Query: 703 ITD---HILIGTPGKMFDWGVKFGMF-DMGKIKVFVLDEADVMINRQGHQXQCIRIHKCL 870
+ + H+++ TPG+++ + + + KIK VLDEAD ++ ++ H + ++ + L
Sbjct: 238 LLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL-QKSHFEELSKLLEIL 296
Query: 871 XSTC----QMMFFSATYGTAVMQLLR 936
+ Q FSAT+ + Q L+
Sbjct: 297 GNPMHTQRQTFIFSATFDEGLQQRLK 322
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.8 bits (116), Expect = 4e-07
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Frame = +1
Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
V F + L +LL+ + G+ P+ +Q + A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 529 AXLSR----------VDSN--------KXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 654
LS VD + K YP L L+PT EL Q E + K + +
Sbjct: 226 PILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWV 284
Query: 655 KLKYAVRGEELPRGSKITDH---ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMIN 825
+ G ++ + D +L TPG++ D + G + IK VLDEAD M++
Sbjct: 285 RPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDL-IDRGRISLANIKFLVLDEADRMLD 343
Query: 826 RQGHQXQCIRIHKCLXSTC----QMMFFSATYGTAVMQLLR 936
G + Q I + T Q + FSAT+ + L R
Sbjct: 344 -MGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLAR 383
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 42.3 bits (95), Expect = 1e-04
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Frame = +1
Query: 373 LXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAXLSRV-- 546
L +LK + + PS IQ A++ G+GKTAAF++ + +
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAET--GSGKTAAFIIPLIIAISK 313
Query: 547 -----DSNKXY-PQVLCLSPTYELA----IQTGEVAAKMAKFCPEIKLKYAVRGEELPRG 696
+SN P + L+PT ELA ++ + A + C + +A +
Sbjct: 314 LPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMS 373
Query: 697 SKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCIRIHKCLXS 876
HI++ TPG++ D ++ +F + + V+DEAD M++ G + +I L S
Sbjct: 374 QGA--HIVVATPGRLLDC-LERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLPS 429
Query: 877 T 879
+
Sbjct: 430 S 430
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.9 bits (94), Expect = 2e-04
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 15/209 (7%)
Frame = +1
Query: 355 TFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAX 534
+F ++++ L V A GF + +Q + ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 535 LSRV---DSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPE-------IKLKYAVRGE- 681
+V D+++ L ++PT ELA Q V ++ + P+ + + G+
Sbjct: 60 FDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKG 119
Query: 682 ----ELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQC 849
+L + ++IGTPG++ + +++ +LDEAD +I+ G Q
Sbjct: 120 TLTNDLASFREKNPSVVIGTPGRLNE---MLSHISSKHLEILILDEADTLID-MGFQRTL 175
Query: 850 IRIHKCLXSTCQMMFFSATYGTAVMQLLR 936
I L + FSAT V L+
Sbjct: 176 QSIISQLPKQRRTGLFSATMNDTVSSFLK 204
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 0.002
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Frame = +1
Query: 418 APSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVLAXLSRV-------DSNKXYPQVL 576
AP+ IQ + ++Q+G+GKT A++L + R+ + +
Sbjct: 161 APTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAV 220
Query: 577 CLSPTYELAIQTGEVAAKMAKF-CPEIKLKYAVRGEELPRGSKITD----HILIGTPGKM 741
++PT EL Q VA K+ + V G E + K +ILIGTPG++
Sbjct: 221 IMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 742 FDWGVKFGMFDMGKIKVFVLDEADVMIN 825
D D+ +++ VLDE D +++
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMD 308
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.9 bits (84), Expect = 0.003
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Frame = +1
Query: 484 AQSQSGTGKTAAFVLAXLSRVDSNKXYP-QVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 660
A + +G+GKT A++ L ++ + + + ++PT EL Q A K++ F +K+
Sbjct: 88 ACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLS-FGTSLKI 146
Query: 661 KYAVRGEEL--PRGSKITDH--ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR 828
+ E + K+ + + IGTP ++ ++ G+ K++ FV+DEAD +
Sbjct: 147 IELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQ-AIQTGL-SFEKVEFFVMDEADRLFEP 204
Query: 829 QGHQXQCIRIHKCLXSTCQMMFFSATYGTAVMQLLR 936
+ + C S FSAT + V +L +
Sbjct: 205 GFIEQTDHILSACTSSNICKSLFSATIPSRVEELAK 240
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.020
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Frame = +1
Query: 496 SGTGKTAAFVLAXLSRVDSNKXYPQVLC--LSPTYELAIQTGEV--------AAKMAKFC 645
+G+GKT ++V+ + + S++ P++ C + PT EL +Q + ++ +
Sbjct: 182 TGSGKTLSYVIPIVQCL-SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWT 240
Query: 646 PEIKLK---YAVRGEELPRGSKITDHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADV 816
+ L+ Y + G+E ++ +L+ TPG++ D F + ++ V+DEAD
Sbjct: 241 GQKSLRHETYQLNGDE----NECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADR 296
Query: 817 MINR 828
++++
Sbjct: 297 LLDQ 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,945
Number of Sequences: 5004
Number of extensions: 55098
Number of successful extensions: 174
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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