Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I16
         (1219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       60   4e-11
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   7.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 60.1 bits (139), Expect = 4e-11
 Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
 Frame = +1

Query: 349 VKTFXALHLXPNLLKGVXAXGFXAPSKIQXXXXXXXXXXXXQXXXAQSQSGTGKTAAFVL 528
           +++F A  L   +L  +   G+  P+ +Q            +   A +Q+G+GKTAAF +
Sbjct: 195 IESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNG--RDLMACAQTGSGKTAAFAV 252

Query: 529 AXLSR---------VDSNKXYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGE 681
             ++          V S    PQV+ +SPT EL IQ  +   K +     +K   A  G 
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKTVVAYGGT 311

Query: 682 EL--PRGSKITD-HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQXQCI 852
            +   RG      HIL+ TPG++ D+ V+ G      ++  VLDEAD M++  G      
Sbjct: 312 SVMHQRGKLSAGCHILVATPGRLLDF-VEKGRVKFSSVQFLVLDEADRMLD-MGFLPSIE 369

Query: 853 RI--HKCL--XSTCQMMFFSATYGTAVMQLLR 936
           ++  H+ +      Q + FSAT+   V  L R
Sbjct: 370 KMVDHETMVPLGERQTLMFSATFPDEVQHLAR 401


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 812 SASSNTKTLILPISNMPNLTPQSNIFPGVP 723
           SASSN        ++ PN   ++ IFP  P
Sbjct: 276 SASSNEHEAESEHTSTPNFLSEAKIFPPTP 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,564
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41693346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)