Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I15
         (1157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   1.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    28   2.8  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   3.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   5.0  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   5.0  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   8.7  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 265  KVFNYYSQLVKQRNTSWFSHYLYPGQTLTAFGND 366
            +VF YY +   QR TS     +Y  QT TAFG D
Sbjct: 1131 QVFMYYEKDRVQRRTSPRQQIMYRIQTETAFGPD 1164


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 166 RKTKEKTIAADSLDNNAPVHQIIEFLQSKHK-KNKV 270
           R  + + IAA S+DN+ P+  +I  L + H  KNKV
Sbjct: 147 RMYRSEDIAASSIDNSTPLACMIATLNNGHTFKNKV 182


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 507 IPIYFFTHYISNWIRYISISHFCCDHF 427
           I  Y F H++  W+   S + F  DHF
Sbjct: 128 IVFYIFNHFLHKWLHESSQTGFLHDHF 154


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +1

Query: 154 QDIIRKTKEKTIAADSLDNNAP-VHQII-EFLQS-KHKKNKVFNYYSQ 288
           + ++ +T EKT ++D+L+ N P V +++   LQS K+K++ V +  +Q
Sbjct: 132 RSVLEQTLEKTPSSDALETNLPNVRELVMHLLQSLKYKQSLVKSRLNQ 179


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 192 RYSLLFGFPYNILFIFFHYFIKSSFIV---NEYFISK 91
           RYS+ F    N +F+    +IKS+ +    N+ F+ K
Sbjct: 40  RYSIPFSLAVNFIFLLMRIYIKSTHVPVQRNQLFVDK 76


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 FYKIMEENKQDIIRKTKEKTIA-ADSLDNN 213
           FYK +E+N QD++     +T A A  +D N
Sbjct: 136 FYKFLEQNDQDLLEFNAAETDAMAKEIDEN 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,020,790
Number of Sequences: 5004
Number of extensions: 82520
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)