BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I15
(1157 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 33 0.57
11_06_0099 + 20070925-20073867 29 7.0
>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 32.7 bits (71), Expect = 0.57
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 283 SQLVKQRNTSWFSHYLYPGQTLTAFGNDWDGGLPSKFFETFAHR 414
+Q+ Q + S ++H Y G T T++G++ +G +P F + H+
Sbjct: 878 NQMESQLHNSQYAHNQYKGSTSTSYGSNLNGKIPLTFEDLSRHQ 921
>11_06_0099 + 20070925-20073867
Length = 980
Score = 29.1 bits (62), Expect = 7.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 665 LASK*ISGSFSQCSATSTRSFGQWSTSSFNHS*TFCFLAFNEINFL 528
L++ + G F QCS S SF + S +SF+ + + E++FL
Sbjct: 610 LSNNLLHGEFPQCSGMSMMSFFRLSNNSFSGNFPSFLQGWTELSFL 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,462,730
Number of Sequences: 37544
Number of extensions: 439843
Number of successful extensions: 1034
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3526513192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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