Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I15
         (1157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   6.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 616 EVAEHWEKDPDIYFDASYNWYYAGNGNMQMISI 714
           ++ E W    +I++  S  +Y    GN   ISI
Sbjct: 191 KLVEKWVNSSEIFYTTSQQYYGHFAGNFSSISI 223


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 435 HNKSAKY*CNGSSY*YNE*KNRLESTLAVSVQKIDLVKSKKTKSL*MVKRGSTPL-PKRP 611
           ++ S K+  + S Y +   +NR  STL +  + +  +KS+   +  M +     L P  P
Sbjct: 220 NSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSPATP 279

Query: 612 SGSSRTLGERP 644
            GS  ++   P
Sbjct: 280 KGSKCSMITTP 290


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +1

Query: 166 RKTKEKTIAADSLDNNAPVHQIIEFLQSKHKKNKVFNYYSQLVKQRNTSWFSHYLYPGQT 345
           R   E  +++D++   +PV +   FL       ++FN    ++   + S    +L P   
Sbjct: 245 RTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVP--M 302

Query: 346 LTAF-GNDW 369
           L  F  N W
Sbjct: 303 LQGFPSNSW 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,289
Number of Sequences: 438
Number of extensions: 6219
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39283326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)