Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I14
         (1246 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    47   3e-05
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    29   6.8  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    29   6.8  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   6.8  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   6.8  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = +1

Query: 163 PNKRRTLXAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMV-DTFQKQYEALKIP 339
           P     L   K  S  +   V   P + PKI++A  K+A+P    V D+ QKQYE++KIP
Sbjct: 24  PEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALPAHSAVLDSLQKQYESVKIP 83

Query: 340 YPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEINATKALLP----YDQMTMED 504
           Y       L E  QW    NA     +   A+     K++    A  P    +D+    +
Sbjct: 84  YGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVEEKWAKAPPVEHFDRQHFVE 143

Query: 505 FYDAH 519
           ++ AH
Sbjct: 144 YFPAH 148



 Score = 32.7 bits (71), Expect = 0.56
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 105 AKRISQSAVNWAALAERVPAEQKAHL 182
           AKR++ S+VNW+ LAER+  E  A L
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAEL 30


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 PPNKRRTLXAFKIKSDNYLRRVLANPPEPPKINWAV 267
           PP KR T   +   S N+ R +   PP PP  N+ +
Sbjct: 179 PPAKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNYQI 214


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 160 PPNKRRTLXAFKIKSDNYLRRVLANPPEPPKINWAV 267
           PP KR T   +   S N+ R +   PP PP  N+ +
Sbjct: 479 PPAKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNYQI 514


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 430 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 597
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 430 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 597
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,912
Number of Sequences: 27780
Number of extensions: 441018
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)