Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I14
         (1246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 161 GNSLSESSPVYGTL*YSFRHFSAFFRLKLRMHNN 60
           G+  SE +P  G      +H   +FR  LR+H+N
Sbjct: 3   GSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDN 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +1

Query: 343 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHP 522
           PA+    +      +  + +D F++E  A++A   +  + T ++ P  +    +   A+P
Sbjct: 54  PAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANP 113

Query: 523 DLA 531
            LA
Sbjct: 114 LLA 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,973
Number of Sequences: 438
Number of extensions: 5558
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)