Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I10
         (1194 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S...    45   0.003
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei...    43   0.014
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary...    43   0.014
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr...    42   0.032
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli...    42   0.032
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=...    42   0.042
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R...    42   0.042
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n...    41   0.073
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary...    40   0.13 

>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
           S30-ubiquitin-like - Suberites domuncula (Sponge)
          Length = 134

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 306 GGKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GGKV GSL RAG V+GQTPKVE  + K +  GR
Sbjct: 72  GGKVHGSLARAGKVRGQTPKVEAQEKKKKKTGR 104



 Score = 41.5 bits (93), Expect = 0.042
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSNS 490
           R+QYNRRFV VV  F  RRGPNSN+
Sbjct: 108 RMQYNRRFVNVVAQFGRRRGPNSNA 132


>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
           30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
           subunit protein 30 - Caenorhabditis elegans
          Length = 130

 Score = 43.2 bits (97), Expect = 0.014
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +3

Query: 306 GGKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GGKV GSL RAG V+ QTPKV+K   K +  GR
Sbjct: 70  GGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGR 102


>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
           Eukaryota|Rep: 40S ribosomal protein S30 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 61

 Score = 43.2 bits (97), Expect = 0.014
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG VK QTPKVEK +   Q  GR
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGR 33


>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
           Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 78

 Score = 41.9 bits (94), Expect = 0.032
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG VK  TPKVEK + K +  GR
Sbjct: 2   GKVHGSLARAGKVKSATPKVEKQEKKKEPKGR 33


>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
           Magnoliophyta|Rep: 40S ribosomal protein S30 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 62

 Score = 41.9 bits (94), Expect = 0.032
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG V+GQTPKV K   K +  GR
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGR 33



 Score = 33.9 bits (74), Expect = 8.4
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSN 487
           R+Q+NRRFV  V  F  +RGPNS+
Sbjct: 37  RLQHNRRFVTAVVGFGKKRGPNSS 60


>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
           Leishmania|Rep: 40S ribosomal protein S30, putative -
           Leishmania major
          Length = 66

 Score = 41.5 bits (93), Expect = 0.042
 Identities = 23/50 (46%), Positives = 26/50 (52%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGRXXXXEFSTTEDLSXLCRP 458
           GK+ GSL RAG VK QTPKV K +   Q  GR       T   LS   +P
Sbjct: 2   GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLSKTVKP 51


>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
           40S ribosomal protein S30 - Homo sapiens (Human)
          Length = 59

 Score = 41.5 bits (93), Expect = 0.042
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSNS 490
           R+QYNRRFV VV TF  ++GPN+NS
Sbjct: 35  RMQYNRRFVNVVPTFGKKKGPNANS 59



 Score = 40.3 bits (90), Expect = 0.096
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +3

Query: 312 KVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           KV GSL RAG V+GQTPKV K + K +  GR
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGR 31


>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
           Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
           Taurus
          Length = 128

 Score = 40.7 bits (91), Expect = 0.073
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 306 GGKVXGSLDRAGXVKGQTPKVEK 374
           GGKV GSLD AG V+GQTPKV+K
Sbjct: 70  GGKVHGSLDCAGKVRGQTPKVDK 92


>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
           Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
           latipes (Medaka fish) (Japanese ricefish)
          Length = 59

 Score = 39.9 bits (89), Expect = 0.13
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +3

Query: 312 KVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           KV GSL RAG V+GQTP V+K + K +  GR
Sbjct: 1   KVHGSLARAGKVRGQTPNVDKHEEKEEEDGR 31



 Score = 39.5 bits (88), Expect = 0.17
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSNS 490
           RIQYNRRFV VV TF  ++G N+NS
Sbjct: 35  RIQYNRRFVNVVPTFGKKKGANANS 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,394,717
Number of Sequences: 1657284
Number of extensions: 6609849
Number of successful extensions: 8436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8434
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 119945242685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)