Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I10
         (1194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    43   7e-05
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    43   7e-05

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG VK QTPKVEK +   Q  GR
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGR 33


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG VK QTPKVEK +   Q  GR
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,486
Number of Sequences: 5004
Number of extensions: 29438
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)