Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I10
         (1194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           42   0.001

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +3

Query: 309 GKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GKV GSL RAG V+GQTPKV K   K +  GR
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGR 33



 Score = 35.5 bits (78), Expect = 0.083
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSN 487
           R+QYNRRFV  V  F  +RGPNS+
Sbjct: 37  RMQYNRRFVTAVVGFGKKRGPNSS 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,159
Number of Sequences: 37544
Number of extensions: 174679
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)