Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I10
         (1194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    43   4e-04

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +3

Query: 306 GGKVXGSLDRAGXVKGQTPKVEKXQXKXQXXGR 404
           GGKV GSL RAG V+ QTPKV+K   K +  GR
Sbjct: 70  GGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGR 102



 Score = 33.1 bits (72), Expect = 0.40
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 416 RIQYNRRFVXVVQTFXXRRGPNSNS 490
           R+QY RR+V V      +RGPNSNS
Sbjct: 106 RVQYTRRYVNVASGPGKKRGPNSNS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,314
Number of Sequences: 27780
Number of extensions: 171657
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3276419812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)