Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I08
(1250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 32 0.19
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.44
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 30 0.77
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 29 1.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 2.3
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 3.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 3.1
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 4.1
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 27 5.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 5.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 7.2
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 7.2
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 26 9.5
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 9.5
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 9.5
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 486 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSI 659
C++ +M + ++++++ R + ++D+P E ++ DK E KSLE++S S+
Sbjct: 3 CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 658 IEFDNCSKLXTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 521
+EF CS L +S ILS + E KL G+STSA + K A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.77
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 162 NEGEDDEQKIPQSATSPVTSXKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRL 341
NE + PQ T+ +S ISS + + G +LN + S+ ++
Sbjct: 261 NEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVS--SFNSDSHS 318
Query: 342 QRDFMRSNYTNRPKNIPKETPDVKN 416
+D++ +YTN P + KE+ D N
Sbjct: 319 PKDYISQSYTNEP-GLKKESADSFN 342
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 28.7 bits (61), Expect = 1.8
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 129 EEANETQQLMQNEGEDDEQKIPQSATSPVTSXKISSEAASLTSKNHEKVLTSTGNSLNES 308
+ +E+ ++ NE + +IP+ T T+ E + + +L+ + ++ NES
Sbjct: 1285 QNLDESACVLTNESSLSQTEIPEEKTENETTAVNGFENSK--KRQFSSLLSGSIDTNNES 1342
Query: 309 TKVSYVN-ERRLQRDFMRSNYTNRPKNIPKETPDVKNME-KALLELL 443
KVS V ++ +D ++S T I K D+K+ E + L +LL
Sbjct: 1343 NKVSSVEFDKSGPQDIIQS-MTEATFEIEKNIQDLKSEEVQKLSDLL 1388
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 2.3
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Frame = +3
Query: 78 WKFRIFKIKNI*MSL---HLEEANETQQLMQNEGEDDEQKIPQSATSPVTSXK----ISS 236
WK R + N + LEE + + ++ E ++ E K+ ++A T + ++
Sbjct: 1335 WKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNE 1394
Query: 237 EAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQR-DFMRSNYTNRPKNIPKETPDVK 413
E +L + + +T + + K + + L R ++ TN+ K + + + +
Sbjct: 1395 EVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENE 1454
Query: 414 NMEKALLELLDDFHTGKLSAFGSG--CSMEQMINIRDQQE 527
M+K + L D H + SA + EQ ++ ++E
Sbjct: 1455 AMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSEKE 1494
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 414 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFE 593
N+E+ + + S+ +GC E + ++ + +++A+ H ++ + E+ F
Sbjct: 56 NIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115
Query: 594 NSAS--RDKMEQLVKSLEQL 647
A+ +DK + +V +E++
Sbjct: 116 RYAASLKDKKKMIVSGIEKV 135
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 EEANETQQLMQNEGEDDEQKIPQSATSPV------TSXKISSEAASLTSKNHEKVLTSTG 290
E+ N ++ + EG +++ +S+T+ TS ++ +A TS H+K TS+
Sbjct: 76 EKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSANSSAERTSSQHQKPETSSQ 135
Query: 291 NSLNESTKVSYVNERRLQRD 350
+ + V VNE+ ++
Sbjct: 136 IGKDNAAPVENVNEKSTSQE 155
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 285 TGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKNIPKET 401
TGN N S V ++ +RDF +N NRPK + ++T
Sbjct: 630 TGNIYSNNSPGVKALSSDNFKRDFGDTNAINRPKFVGQQT 669
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 282 STGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKN 386
+TGNS NE K S + + D+M SNYT N
Sbjct: 79 ATGNSTYNELVKTSMLYQSGEDSDYMPSNYTTSEGN 114
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 5.4
Identities = 22/110 (20%), Positives = 41/110 (37%)
Frame = +3
Query: 129 EEANETQQLMQNEGEDDEQKIPQSATSPVTSXKISSEAASLTSKNHEKVLTSTGNSLNES 308
E+ NE ++ ++ ++ K + +S T + T G++ +S
Sbjct: 99 EKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKS 158
Query: 309 TKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHT 458
+ +R + +T R KN PK +P + E A E HT
Sbjct: 159 SHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHT 208
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +3
Query: 123 HLEEANETQQLMQNEGEDDEQKIPQSATSPVTSXKISSEAASLTSKNHEKVLTSTGNS-- 296
H +E ++L G D+ +K S P T+ I+ + + S + + L T N+
Sbjct: 588 HFHSVSEIKKLPM--GTDELEK---SMVRPSTAMYINRQNENAVSIDKSRDLQGTVNTKE 642
Query: 297 LNESTKVSYVNERRLQRDFMRSNYTNRPKNI 389
+ + +SY N+R L D Y ++ N+
Sbjct: 643 IRSRSALSYQNDRPLATDLPSVIYNHKHPNV 673
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +3
Query: 126 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSXKISSEAASLTSKNHEKVLTSTGNSLNE 305
++E N+ +D++K + S + AA SK + V S +
Sbjct: 146 VKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEET 205
Query: 306 STKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVK 413
STK S ++D + + T + TPD+K
Sbjct: 206 STKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIK 241
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 9.5
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%)
Frame = +3
Query: 84 FRIFKIKNI*MSLHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSXKISSEAASLTSKN 263
F I + K S + AN +L+ EG + +P S+ T+ E +
Sbjct: 23 FTIIRDKTKPRSEFIFYANRIIRLIVEEGLNH---LPVSSAKVTTAQNAEYEGVMFDGRI 79
Query: 264 HEKVLTSTGNSLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELL 443
+ G S+ + + + R + R T++P + P+ ++ K + LL
Sbjct: 80 CGVSIMRAGESMEQGLRECCRSVRIGKILIQRDEETHKPVLHYIKLPE--DISKRYVLLL 137
Query: 444 DDFHTGKLSAFGSG-CSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFEN 596
D L+ GS C+ME +IN+ +QE + L+ + K D F N
Sbjct: 138 DPM----LATGGSAICAMEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPN 185
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 798 YHLENVPIQLPIILYCLALQN 860
+ LE V +Q P+ + CLA++N
Sbjct: 39 FSLEKVQLQFPVSIRCLAVEN 59
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 348 LFEDVFHLRTTPSWIRLDCYQYW-*VLFHDFLMLNLRLRL 232
++ VFH+R TP +LD + VLF + L L LRL
Sbjct: 153 VWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRL 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,271,644
Number of Sequences: 5004
Number of extensions: 86558
Number of successful extensions: 286
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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