Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I07
         (1188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       75   1e-15
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.75 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   1.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 74.9 bits (176), Expect = 1e-15
 Identities = 33/90 (36%), Positives = 57/90 (63%)
 Frame = +2

Query: 386 RNDKTYRRSYTHAKPPYSYISLITMAIQNNPSRMLTLSEIYQFIMDLFPFYRQNQQRWQN 565
           RN + Y+ +    +PP++Y SLI  +I  +P + LTL+EIY +  + F ++R+N   W+N
Sbjct: 493 RNREFYKNA--DVRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKN 550

Query: 566 SIRHSLSFNDCFVKVPRTPDKPGKGSFWTL 655
           ++RH+LS + CF++V        KG+ WT+
Sbjct: 551 AVRHNLSLHKCFMRVENV-----KGAVWTV 575


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 AIQNNPSRMLTLSEIYQFIMDLFPFYRQNQQRW 559
           A Q +  R+L +SEI   I+D+ P  +   Q W
Sbjct: 564 ASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLW 596


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 574 SDRVLPALLVLSVEREQIHDELVDFGERQ 488
           +DR+L    + S+E+   H+ +V  GERQ
Sbjct: 356 ADRMLDMGFLPSIEKMVDHETMVPLGERQ 384


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 695 LRRQKRFKDEKKETLRQAQKAQQTHGHHGGSHDKRGEHGHDKSAPXG 835
           L R++RF   + E     Q   QT  H  G H   G HG   SAP G
Sbjct: 114 LSREQRFLRRRLE-----QLTNQTGLH--GLHGLHGLHGLSSSAPTG 153


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 704 DVARNNRFRTCSRCQDVASKRNLFRACPACAALS 603
           D  R++RF++  RCQ +++KR+  R     A L+
Sbjct: 67  DFPRSHRFKSLPRCQ-LSNKRDRSRELIKAAILA 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,290
Number of Sequences: 438
Number of extensions: 4695
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)