Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I06
(1241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 127 2e-29
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 124 1e-28
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 94 2e-19
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 60 4e-09
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 60 5e-09
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.9
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 1.9
07_03_0039 - 12718972-12720699 29 5.7
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 127 bits (306), Expect = 2e-29
Identities = 58/114 (50%), Positives = 80/114 (70%)
Frame = +1
Query: 100 SNXKXHIHLSSXRLRAXKIRRKSPXRVPVIVXKAPKARLGXLDKKKYLVPSDLTVGQFYF 279
S+ K L + A +IR K R+PVIV KA ++ + +DKKKYLVP+DLTVGQF +
Sbjct: 4 SSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVY 63
Query: 280 LIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 441
++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 64 VVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 124 bits (299), Expect = 1e-28
Identities = 55/107 (51%), Positives = 77/107 (71%)
Frame = +1
Query: 124 LSSXRLRAXKIRRKSPXRVPVIVXKAPKARLGXLDKKKYLVPSDLTVGQFYFLIRKRIHL 303
L + + +IR K R+PVIV KA K + +DKKKYLVP+DLTVGQF +++RKRI L
Sbjct: 176 LERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKL 235
Query: 304 RPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 444
PE A+F FV N +PPT++ M ++Y+E+ DED FLY+ +S EN +G+
Sbjct: 236 SPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 94.3 bits (224), Expect = 2e-19
Identities = 39/69 (56%), Positives = 54/69 (78%)
Frame = +1
Query: 235 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYI 414
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DED FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 415 AFSDENVYG 441
+S EN +G
Sbjct: 1944 TYSGENTFG 1952
Score = 36.3 bits (80), Expect = 0.050
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 145 AXKIRRKSPXRVPVIVXKAPKARLGXLDKKK 237
A +IR K P R+PVIV KA ++ + +DKKK
Sbjct: 1812 ANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 60.1 bits (139), Expect = 4e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 441
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 221 KRKLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 59.7 bits (138), Expect = 5e-09
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 441
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = -3
Query: 1119 PXXGXXPXPPPXXPGXXXXXXXXXXPPKXXPLXPGXXXXXXXXKNXPXPPPXP 961
P P PPP P PP P P + P PPP P
Sbjct: 539 PTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPP 591
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -3
Query: 1101 PXPPPXXPGXXXXXXXXXXPPKXXPLXPGXXXXXXXXKNXPXPPPXP 961
P PPP P PP P P P PPP P
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = -3
Query: 1101 PXPPPXXPGXXXXXXXXXXPPKXXPLXPGXXXXXXXXKNXPXPPPXP 961
P PPP P PP P P + P PPP P
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = -3
Query: 1131 KXXXPXXGXXPXPPPXXPGXXXXXXXXXXPPKXXPLXPGXXXXXXXXKNXPXPPPXP 961
K P P P P PG PK P PG K P P P P
Sbjct: 166 KPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGP 222
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 357
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,041,004
Number of Sequences: 37544
Number of extensions: 417853
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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