Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I06
         (1241 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   173   2e-43
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   173   2e-43
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    71   2e-12
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    30   3.9  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/111 (72%), Positives = 89/111 (80%)
 Frame = +1

Query: 109 KXHIHLSSXRLRAXKIRRKSPXRVPVIVXKAPKARLGXLDKKKYLVPSDLTVGQFYFLIR 288
           K   +    R    KIRRK P R+PVIV KAPK++L  LDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 289 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 441
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/111 (72%), Positives = 89/111 (80%)
 Frame = +1

Query: 109 KXHIHLSSXRLRAXKIRRKSPXRVPVIVXKAPKARLGXLDKKKYLVPSDLTVGQFYFLIR 288
           K   +    R    KIRRK P R+PVIV KAPK++L  LDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 289 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 441
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +1

Query: 151 KIRRKSPXRVPVIVXKAPKAR-LGXLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFF 327
           +IR + P +VPVI+ +    R L  +D+ K+LVP  +TV +   ++R+R+ L P+ A F 
Sbjct: 32  EIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFL 91

Query: 328 FVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 441
            VN   +   S +M +LY +  D D F+Y+ ++ +  +G
Sbjct: 92  LVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +3

Query: 471 SFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIILYLSSYE*YKTFQASKGLLCFHIFVL 650
           SFT+ +  + F++ L  KL +++++FF I    I+   ++   K+F  S  LL    FVL
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFYIVRKAIIEHKTFT--KSFIGSCTLLII-AFVL 172

Query: 651 VE 656
           +E
Sbjct: 173 LE 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,134,110
Number of Sequences: 27780
Number of extensions: 359902
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)