Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I05
(1227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 83 4e-16
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 83 4e-16
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 83 4e-16
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 83 4e-16
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 83 4e-16
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 83 4e-16
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 83 4e-16
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 54 3e-07
01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333... 30 4.3
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 29 7.5
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 9.9
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 70 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 VXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 67
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 42 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 42.7 bits (96), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +3
Query: 96 LVXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
+V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 70 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 VXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 67
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 42 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 42.7 bits (96), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +3
Query: 96 LVXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
+V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 69 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
Score = 43.2 bits (97), Expect = 4e-04
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +3
Query: 90 QKLVXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
Q+ V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 26 QQPVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 66
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 70 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 VXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 67
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 83.0 bits (196), Expect = 4e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +1
Query: 214 RYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
RY RKQ GYGGQ+KP+F IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 42 RYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 42.7 bits (96), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +3
Query: 96 LVXVPKQRRPSCKXCQC--HKVHKVSQYKKSKERHAAQG 206
+V VPK ++ CK +C H +HKV+QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 53.6 bits (123), Expect = 3e-07
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 292 IVLRLECADCKVXSQVALKRCKHFELGGDKKRKG 393
IVL+L+C CK SQ +KRCKHF++GGDKK KG
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>01_01_0449 +
3335408-3335479,3336310-3336389,3336911-3336989,
3337342-3337423,3337820-3337976,3338660-3338717,
3338718-3338828,3339211-3339257,3339820-3339948,
3340750-3340834,3341264-3341344,3341881-3341886
Length = 328
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 86 HSKIGARPKTAQAVLQKXSMPQSPQGLTVQKVQGKARCPGXAAVMXVNSRVTVVSP 253
+ GAR AQ L+ + QS G VQ G+ C G A+M V++ V P
Sbjct: 45 YKSTGARYIAAQKYLEALDILQS--GALVQLKHGQVTCGGELAIMFVDTLVKAALP 98
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 106 SQNSAGRPAKXVNATKSTRSHSTKSPRKGTLPRXXSRYXRKQQG 237
+QN A RP + N K T + +TK RK T + ++ + +QG
Sbjct: 1017 NQNKA-RPKRNNNEEKQTANSATKGKRKATEDKGTNKKQKSKQG 1059
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 232 QGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRCK 357
QG GG S +F ++LE ADC + +V RCK
Sbjct: 214 QGIGGFSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCK 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,444
Number of Sequences: 37544
Number of extensions: 223067
Number of successful extensions: 595
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -