Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_I05
         (1227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    91   1e-18
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    91   1e-18

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 40/78 (51%), Positives = 51/78 (65%)
 Frame = +1

Query: 175 KSPRKGTLPRXXSRYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRC 354
           K  ++    +   RY RKQ G+GGQ+KPIF         IVLR+EC +CK   Q+ +KRC
Sbjct: 28  KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRC 87

Query: 355 KHFELGGDKKRKGQMIQF 408
           KHFELGG KK +GQ+IQF
Sbjct: 88  KHFELGGQKKSRGQVIQF 105



 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  LVXVPKQRRPSCKX-CQCHKVHKVSQYKKSKERHAAQG 206
           +V VPK RR  C   C+ H  HKV+QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 40/78 (51%), Positives = 51/78 (65%)
 Frame = +1

Query: 175 KSPRKGTLPRXXSRYXRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVXSQVALKRC 354
           K  ++    +   RY RKQ G+GGQ+KPIF         IVLR+EC +CK   Q+ +KRC
Sbjct: 28  KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRC 87

Query: 355 KHFELGGDKKRKGQMIQF 408
           KHFELGG KK +GQ+IQF
Sbjct: 88  KHFELGGQKKSRGQVIQF 105



 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  LVXVPKQRRPSCKX-CQCHKVHKVSQYKKSKERHAAQG 206
           +V VPK RR  C   C+ H  HKV+QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,261
Number of Sequences: 27780
Number of extensions: 182008
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)