Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I03
(1180 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 401 e-110
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 398 e-109
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 301 2e-80
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 285 2e-75
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 283 8e-75
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 236 9e-61
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 223 5e-57
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 212 2e-53
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 211 3e-53
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 208 2e-52
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 208 2e-52
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 206 9e-52
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 201 3e-50
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 198 2e-49
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 198 3e-49
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 188 3e-46
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 185 2e-45
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 184 5e-45
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 182 2e-44
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 181 4e-44
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 181 4e-44
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 180 6e-44
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 180 9e-44
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 178 2e-43
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 177 5e-43
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 176 8e-43
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 175 1e-42
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 174 3e-42
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 172 1e-41
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 172 1e-41
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 170 7e-41
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 169 9e-41
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 169 1e-40
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 169 2e-40
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 167 5e-40
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 165 3e-39
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 165 3e-39
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 165 3e-39
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 163 8e-39
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 162 1e-38
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 161 3e-38
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 160 6e-38
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 158 3e-37
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 156 1e-36
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 155 2e-36
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 153 1e-35
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 151 3e-35
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 151 3e-35
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 149 1e-34
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 146 7e-34
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 145 2e-33
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 144 4e-33
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 143 7e-33
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 142 2e-32
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 140 5e-32
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 136 1e-30
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 135 2e-30
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 131 3e-29
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 124 6e-27
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 111 4e-23
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 109 1e-22
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 109 2e-22
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 106 1e-21
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 104 5e-21
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 103 1e-20
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 101 5e-20
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 101 5e-20
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 99 1e-19
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 100 1e-19
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 98 3e-19
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 98 3e-19
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 97 1e-18
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 97 1e-18
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 96 2e-18
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 95 3e-18
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 95 4e-18
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 95 4e-18
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 94 5e-18
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 94 5e-18
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 94 7e-18
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 94 7e-18
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 92 3e-17
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 91 4e-17
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 91 5e-17
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 91 7e-17
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 90 1e-16
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 90 1e-16
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 89 2e-16
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 89 3e-16
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 88 4e-16
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 88 4e-16
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 88 4e-16
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 87 8e-16
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 87 1e-15
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 86 1e-15
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 86 1e-15
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 86 1e-15
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 86 2e-15
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 85 3e-15
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 85 4e-15
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 85 4e-15
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 84 8e-15
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 84 8e-15
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 84 8e-15
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 83 1e-14
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 83 1e-14
UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22; A... 83 2e-14
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 83 2e-14
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 82 2e-14
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 82 2e-14
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 82 3e-14
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 82 3e-14
UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2... 82 3e-14
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 81 4e-14
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 81 4e-14
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 81 4e-14
UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1; ... 81 5e-14
UniRef50_O64301 Cluster: DNA polymerase accessory protein 44; n=... 81 5e-14
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 81 7e-14
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 81 7e-14
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 81 7e-14
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 80 1e-13
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 80 1e-13
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 80 1e-13
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 80 1e-13
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 80 1e-13
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 80 1e-13
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 79 2e-13
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 79 2e-13
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 79 2e-13
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 79 2e-13
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 79 2e-13
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 79 2e-13
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 79 2e-13
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 79 3e-13
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 79 3e-13
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 78 4e-13
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 78 4e-13
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 78 5e-13
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 78 5e-13
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 78 5e-13
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 78 5e-13
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 78 5e-13
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 77 7e-13
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 77 7e-13
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 77 7e-13
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 77 9e-13
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 77 9e-13
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 77 1e-12
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 77 1e-12
UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1; Exigu... 77 1e-12
UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and ... 77 1e-12
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 77 1e-12
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 77 1e-12
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 77 1e-12
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 76 2e-12
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 76 2e-12
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 76 2e-12
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 76 2e-12
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 76 2e-12
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 76 2e-12
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 76 2e-12
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 76 2e-12
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 75 3e-12
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 75 3e-12
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 75 3e-12
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 75 3e-12
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 75 4e-12
UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit; ... 75 4e-12
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 75 4e-12
UniRef50_Q057E1 Cluster: DNA polymerase III, g and t subunits; n... 75 4e-12
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 75 4e-12
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 75 4e-12
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 54 5e-12
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 75 5e-12
UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1; Limnob... 75 5e-12
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 75 5e-12
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 75 5e-12
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 75 5e-12
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 74 6e-12
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 74 6e-12
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 74 6e-12
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 74 6e-12
UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida al... 74 6e-12
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 74 8e-12
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 74 8e-12
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 74 8e-12
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 74 8e-12
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 73 1e-11
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau; ... 73 1e-11
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 73 1e-11
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 73 1e-11
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 73 1e-11
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 73 1e-11
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 73 1e-11
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 73 2e-11
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 73 2e-11
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 72 3e-11
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 72 3e-11
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 72 3e-11
UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and t... 72 3e-11
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 72 3e-11
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 72 3e-11
UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4; ... 72 3e-11
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 72 3e-11
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 71 4e-11
UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and ... 71 4e-11
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 71 4e-11
UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 71 6e-11
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 71 6e-11
UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and ... 71 6e-11
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 71 6e-11
UniRef50_A4C5P9 Cluster: Putative DnaX, DNA polymerase III, gamm... 71 6e-11
UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and ... 71 6e-11
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 71 8e-11
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 71 8e-11
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 71 8e-11
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 71 8e-11
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 70 1e-10
UniRef50_Q1ZGI5 Cluster: DNA polymerase III subunits gamma and t... 70 1e-10
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 70 1e-10
UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2; ... 70 1e-10
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 70 1e-10
UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;... 70 1e-10
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 70 1e-10
UniRef50_Q31I98 Cluster: DNA polymerase III subunit gamma and ta... 70 1e-10
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 70 1e-10
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 69 2e-10
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 69 2e-10
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 69 2e-10
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 69 2e-10
UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1... 69 2e-10
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 69 2e-10
UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subuni... 69 3e-10
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 69 3e-10
UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and ... 69 3e-10
UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis tha... 69 3e-10
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 68 4e-10
UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau ... 68 4e-10
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 68 5e-10
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 68 5e-10
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 68 5e-10
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 68 5e-10
UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III, gamm... 67 7e-10
UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and ... 67 7e-10
UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and ... 67 7e-10
UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n... 67 7e-10
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 67 7e-10
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 67 7e-10
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 67 1e-09
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 67 1e-09
UniRef50_A4BJR3 Cluster: DNA polymerase III subunits gamma and t... 67 1e-09
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 67 1e-09
UniRef50_Q8EFG0 Cluster: DNA polymerase III, gamma and tau subun... 66 1e-09
UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;... 66 1e-09
UniRef50_Q1N199 Cluster: DNA polymerase III subunits gamma and t... 66 1e-09
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 66 1e-09
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2; E... 66 1e-09
UniRef50_Q83DN8 Cluster: DNA polymerase III, gamma and tau subun... 66 2e-09
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 66 2e-09
UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator ... 66 2e-09
UniRef50_Q63UU8 Cluster: DNA polymerase III subunit gamma; n=19;... 66 2e-09
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 66 2e-09
UniRef50_A6FBQ8 Cluster: Hypothetical DNA polymerase III, subuni... 66 2e-09
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 66 2e-09
UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and t... 65 3e-09
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 65 3e-09
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 65 3e-09
UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2; ... 65 3e-09
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 65 3e-09
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 65 3e-09
UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit; ... 65 4e-09
UniRef50_Q39FP4 Cluster: DNA-directed DNA polymerase; n=13; Burk... 65 4e-09
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 65 4e-09
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 65 4e-09
UniRef50_Q8D230 Cluster: DnaX protein; n=1; Wigglesworthia gloss... 64 5e-09
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 64 5e-09
UniRef50_A3D5Q4 Cluster: DNA polymerase III, subunits gamma and ... 64 5e-09
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 64 7e-09
UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subuni... 64 7e-09
UniRef50_Q1QXJ7 Cluster: DNA polymerase III, subunits gamma and ... 64 7e-09
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 64 7e-09
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 64 9e-09
UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and ... 64 9e-09
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 64 9e-09
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 64 9e-09
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 63 1e-08
UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and ... 63 1e-08
UniRef50_A1RIP8 Cluster: DNA polymerase III, subunits gamma and ... 63 1e-08
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 63 2e-08
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 63 2e-08
UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, wh... 63 2e-08
UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related prote... 63 2e-08
UniRef50_UPI0000DB70D6 Cluster: PREDICTED: similar to Activator ... 62 2e-08
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 62 2e-08
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 62 2e-08
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 62 2e-08
UniRef50_Q2SIX1 Cluster: DNA polymerase III, gamma/tau subunit; ... 62 3e-08
UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and t... 62 3e-08
UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3... 62 3e-08
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 62 3e-08
UniRef50_Q12LL5 Cluster: DNA polymerase III, subunits gamma and ... 62 4e-08
UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1; Methy... 62 4e-08
UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and t... 62 4e-08
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 62 4e-08
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 62 4e-08
UniRef50_Q1NDV9 Cluster: DNA polymerase III delta prime subunit;... 55 4e-08
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 61 5e-08
UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep... 61 5e-08
UniRef50_UPI0000E0E6B7 Cluster: putative DnaX, DNA polymerase II... 61 6e-08
UniRef50_UPI000058605A Cluster: PREDICTED: similar to replicatio... 61 6e-08
UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio b... 61 6e-08
UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5; Actino... 61 6e-08
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 61 6e-08
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 61 6e-08
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 61 6e-08
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 61 6e-08
UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21; B... 60 8e-08
UniRef50_Q1QAW7 Cluster: DNA polymerase III, subunits gamma and ... 60 8e-08
UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta' sub... 60 8e-08
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 60 8e-08
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 60 1e-07
UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gam... 60 1e-07
UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2; Deltaproteobac... 60 1e-07
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 60 1e-07
UniRef50_Q3WEK6 Cluster: DNA-directed DNA polymerase; n=2; Frank... 60 1e-07
UniRef50_A0Q3M3 Cluster: DNA polymerase III, delta subunit, puta... 60 1e-07
UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1; ... 60 1e-07
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 60 1e-07
UniRef50_P35600 Cluster: Replication factor C subunit 1; n=3; Di... 60 1e-07
UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeb... 60 1e-07
UniRef50_Q6FAW7 Cluster: DNA polymerase III, tau and gamma subun... 60 1e-07
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 60 1e-07
UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and ... 60 1e-07
UniRef50_A1S561 Cluster: DNA-directed DNA polymerase; n=1; Shewa... 60 1e-07
UniRef50_UPI0000499AAD Cluster: activator 1 subunit; n=1; Entamo... 59 2e-07
UniRef50_A0Z9H0 Cluster: DNA polymerase III subunits gamma and t... 59 2e-07
UniRef50_A0YC05 Cluster: DNA polymerase III subunits gamma and t... 59 2e-07
UniRef50_Q8RGJ6 Cluster: ATPase associated with chromosome archi... 59 3e-07
UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis thali... 59 3e-07
UniRef50_A0CPS3 Cluster: Chromosome undetermined scaffold_23, wh... 59 3e-07
UniRef50_A3QF53 Cluster: DNA polymerase III, subunits gamma and ... 58 3e-07
UniRef50_A1CI50 Cluster: AAA family ATPase, putative; n=15; Pezi... 58 3e-07
UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and ... 58 4e-07
UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday juncti... 58 4e-07
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 58 6e-07
UniRef50_A6VYC4 Cluster: DNA polymerase III, subunits gamma and ... 58 6e-07
UniRef50_P47658 Cluster: DNA polymerase III subunit gamma/tau; n... 58 6e-07
UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n... 57 8e-07
UniRef50_Q9RKL5 Cluster: DNA polymerase III subunit gamma; n=2; ... 57 1e-06
UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 57 1e-06
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 56 1e-06
UniRef50_Q7QUE5 Cluster: GLP_59_18656_20185; n=1; Giardia lambli... 56 1e-06
UniRef50_UPI0000DB6BAC Cluster: PREDICTED: similar to cutlet CG3... 56 2e-06
UniRef50_Q9I3I1 Cluster: DNA polymerase subunits gamma and tau; ... 56 2e-06
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 56 2e-06
UniRef50_Q9CNR3 Cluster: DnaX; n=2; Pasteurellaceae|Rep: DnaX - ... 55 3e-06
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 55 3e-06
UniRef50_A2DH92 Cluster: Transcription factor, putative; n=1; Tr... 55 3e-06
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 55 4e-06
UniRef50_Q1PVI5 Cluster: Similar to DNA polymerase III clamp loa... 54 5e-06
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 54 5e-06
UniRef50_A5IXK5 Cluster: ATPase, AAA family; n=1; Mycoplasma aga... 54 5e-06
UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1... 54 5e-06
UniRef50_A1IEP1 Cluster: ATPase, AAA family; n=2; Bacteria|Rep: ... 54 5e-06
UniRef50_Q8KCT6 Cluster: DNA polymerase III, gamma and tau subun... 54 7e-06
UniRef50_Q1YTB0 Cluster: DNA polymerase III subunits gamma and t... 54 7e-06
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 54 7e-06
UniRef50_Q50739 Cluster: Uncharacterized AAA domain-containing p... 54 7e-06
UniRef50_P38630 Cluster: Replication factor C subunit 1; n=11; S... 54 7e-06
UniRef50_Q896F9 Cluster: ATPase associated with chromosome archi... 54 9e-06
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 54 9e-06
UniRef50_Q17LI6 Cluster: Replication factor C large subunit, put... 54 9e-06
UniRef50_Q8X080 Cluster: Related to replication factor C protein... 54 9e-06
UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1; ... 54 9e-06
UniRef50_O60182 Cluster: Replication factor C subunit 1; n=1; Sc... 54 9e-06
UniRef50_Q8ZSD6 Cluster: DNA polymerase III, delta prime subunit... 53 1e-05
UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3; Bacter... 53 1e-05
UniRef50_Q3AA20 Cluster: ATPase, AAA family; n=4; Clostridiales|... 53 2e-05
UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in... 53 2e-05
UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1; Chromo... 52 2e-05
UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Re... 52 2e-05
UniRef50_Q3LVV8 Cluster: DNA replication factor C; n=1; Bigelowi... 52 3e-05
UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1; ... 52 3e-05
UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit... 36 3e-05
UniRef50_Q0B0V3 Cluster: DNA polymerase III, delta prime subunit... 52 4e-05
UniRef50_Q18841 Cluster: Putative uncharacterized protein rfc-1;... 52 4e-05
UniRef50_P35251 Cluster: Replication factor C subunit 1; n=56; E... 52 4e-05
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 52 4e-05
UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit; ... 51 5e-05
UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1... 51 5e-05
UniRef50_Q8DB24 Cluster: DNA polymerase III, gamma/tau subunits;... 51 7e-05
UniRef50_Q1F0S1 Cluster: DNA polymerase III delta prime subunit;... 51 7e-05
UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;... 50 9e-05
UniRef50_UPI0000E49FBB Cluster: PREDICTED: similar to MGC81266 p... 50 9e-05
UniRef50_Q1JXH0 Cluster: DNA polymerase III, delta prime subunit... 50 9e-05
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 50 9e-05
UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4... 50 9e-05
UniRef50_Q9C587 Cluster: Replication factor C large subunit-like... 50 9e-05
UniRef50_A2FVE1 Cluster: ATPase, AAA family protein; n=2; Tricho... 50 9e-05
UniRef50_Q8CXU0 Cluster: Uncharacterized ATPase related to the h... 50 1e-04
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 50 1e-04
UniRef50_Q6QN33 Cluster: AAA type ATPase; n=6; Mollicutes|Rep: A... 50 1e-04
UniRef50_Q4P8X9 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 50 2e-04
UniRef50_Q5E417 Cluster: DNA polymerase III, delta' subunit; n=1... 50 2e-04
UniRef50_A6DGQ5 Cluster: DNA polymerase III subunits gamma and t... 50 2e-04
UniRef50_P0AAZ6 Cluster: Uncharacterized protein ycaJ; n=63; Gam... 50 2e-04
UniRef50_UPI0000499E26 Cluster: AAA family ATPase; n=1; Entamoeb... 49 2e-04
UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit... 49 2e-04
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 49 2e-04
UniRef50_Q0ZHG9 Cluster: DNA polymerase III subunits gamma and t... 49 2e-04
UniRef50_A3WC72 Cluster: DNA polymerase III delta prime subunit;... 49 2e-04
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 49 2e-04
UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_P49956 Cluster: Chromosome transmission fidelity protei... 49 2e-04
UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the h... 49 3e-04
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 49 3e-04
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 49 3e-04
UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1; Clost... 49 3e-04
UniRef50_A0LGK0 Cluster: AAA ATPase, central domain protein; n=1... 49 3e-04
UniRef50_A2QMM8 Cluster: Contig An07c0070, complete genome; n=2;... 49 3e-04
UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATP... 49 3e-04
UniRef50_Q5ZHX0 Cluster: Putative uncharacterized protein; n=5; ... 48 4e-04
UniRef50_A0NHS0 Cluster: ATPase, AAA family; n=3; Bacteria|Rep: ... 48 4e-04
UniRef50_A5UZV8 Cluster: AAA ATPase, central domain protein; n=1... 48 5e-04
UniRef50_A3WR59 Cluster: DNA polymerase III gamma and tau subuni... 48 5e-04
UniRef50_Q6CEB7 Cluster: Similar to tr|Q8X080 Neurospora crassa ... 48 5e-04
UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candi... 48 5e-04
UniRef50_Q4PAP0 Cluster: Putative uncharacterized protein; n=1; ... 48 5e-04
UniRef50_Q9USQ1 Cluster: Chromosome transmission fidelity protei... 48 5e-04
UniRef50_Q6KHC7 Cluster: ATPase; n=1; Mycoplasma mobile|Rep: ATP... 48 6e-04
UniRef50_Q28US4 Cluster: AAA ATPase protein; n=11; Proteobacteri... 48 6e-04
UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit... 48 6e-04
UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3; ... 48 6e-04
UniRef50_A0UHY5 Cluster: AAA ATPase; n=1; Burkholderia multivora... 48 6e-04
UniRef50_P78622 Cluster: Replication factor C like protein; n=5;... 48 6e-04
UniRef50_Q5D9J2 Cluster: SJCHGC06117 protein; n=1; Schistosoma j... 47 8e-04
UniRef50_Q6AB61 Cluster: ATPase; n=2; Propionibacterineae|Rep: A... 47 0.001
UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep: AGR... 47 0.001
UniRef50_A4XHH7 Cluster: DNA-directed DNA polymerase; n=1; Caldi... 47 0.001
UniRef50_A5K9Q8 Cluster: Replication factor c, putative; n=1; Pl... 47 0.001
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 46 0.001
UniRef50_A3YHR7 Cluster: DNA polymerase III subunit delta; n=1; ... 46 0.001
UniRef50_A1WB62 Cluster: AAA ATPase, central domain protein; n=2... 46 0.001
UniRef50_Q7R1M6 Cluster: GLP_28_54688_52016; n=1; Giardia lambli... 46 0.001
UniRef50_Q96S08 Cluster: Protein CTF18 homolog; n=22; cellular o... 46 0.001
UniRef50_Q1DWQ3 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_UPI00004999D6 Cluster: AAA family ATPase; n=1; Entamoeb... 46 0.002
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 46 0.002
UniRef50_A2QK40 Cluster: Similarity: belongs to the superfamily ... 46 0.002
UniRef50_Q7NIS3 Cluster: Glr2109 protein; n=13; Bacteria|Rep: Gl... 46 0.003
UniRef50_Q5FK52 Cluster: Chromosome segregation helicase; n=3; L... 46 0.003
UniRef50_A6LJD0 Cluster: AAA ATPase, central domain protein; n=2... 46 0.003
UniRef50_A5GP04 Cluster: DNA polymerase III delta prime subunit;... 46 0.003
UniRef50_A4J0K7 Cluster: DNA polymerase III, delta prime subunit... 45 0.003
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 45 0.003
UniRef50_Q10NN1 Cluster: ATPase, AAA family protein, expressed; ... 45 0.003
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 45 0.003
UniRef50_Q8I233 Cluster: Replication factor c protein, putative;... 45 0.004
UniRef50_P43748 Cluster: DNA polymerase III subunit delta'; n=17... 45 0.004
UniRef50_UPI00015B50FB Cluster: PREDICTED: similar to conserved ... 44 0.006
UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner hel... 44 0.006
UniRef50_Q6MCA3 Cluster: Putative DNA polymerase III, delta' sub... 44 0.006
UniRef50_Q46HP5 Cluster: DNA polymerase III, delta prime subunit... 44 0.006
UniRef50_Q2GJU1 Cluster: Conserved domain protein; n=2; Anaplasm... 44 0.006
UniRef50_Q7D554 Cluster: DNA polymerase III, delta' subunit; n=2... 44 0.006
UniRef50_A6FN73 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A5GNS9 Cluster: ATPase related to the helicase subunit ... 44 0.006
UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia ... 44 0.006
UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8; C... 44 0.008
UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit... 44 0.008
UniRef50_Q67JB2 Cluster: DNA polymerase III delta' subunit; n=1;... 44 0.008
UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prim... 44 0.008
UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit... 44 0.008
UniRef50_A5DUH6 Cluster: Activator 1 95 kDa subunit; n=1; Lodder... 44 0.008
UniRef50_UPI0000DAE388 Cluster: hypothetical protein Rgryl_01000... 44 0.010
UniRef50_Q6NU40 Cluster: MGC81266 protein; n=3; Eumetazoa|Rep: M... 44 0.010
UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25; Rhod... 44 0.010
UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1; Sphin... 44 0.010
UniRef50_A6FVT5 Cluster: Replication factor C small subunit; n=1... 44 0.010
UniRef50_Q7RGG9 Cluster: ATPase, AAA family, putative; n=5; Plas... 44 0.010
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 44 0.010
UniRef50_UPI0000D56DA8 Cluster: PREDICTED: similar to CG16838-PD... 43 0.013
UniRef50_A4E6Q7 Cluster: Putative uncharacterized protein; n=2; ... 43 0.013
UniRef50_A0Z287 Cluster: DNA polymerase III subunit delta; n=1; ... 43 0.013
UniRef50_A6R2J2 Cluster: Predicted protein; n=1; Ajellomyces cap... 43 0.013
UniRef50_A4T0L3 Cluster: AAA ATPase; n=1; Polynucleobacter sp. Q... 43 0.018
UniRef50_A0Q7R7 Cluster: AAA family-ATPase; n=11; Francisella tu... 43 0.018
UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit ... 43 0.018
UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA hel... 43 0.018
UniRef50_Q5FHH2 Cluster: DNA polymerase III subunit gamma; n=5; ... 42 0.023
UniRef50_A3Y409 Cluster: DNA polymerase III subunit delta; n=3; ... 42 0.023
UniRef50_UPI0000D57862 Cluster: PREDICTED: similar to ATPase WRN... 42 0.031
UniRef50_Q4T303 Cluster: Chromosome 18 SCAF10147, whole genome s... 42 0.031
UniRef50_Q8RDE3 Cluster: ATPase involved in DNA replication; n=3... 42 0.031
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 401 bits (987), Expect = e-110
Identities = 186/260 (71%), Positives = 225/260 (86%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP IVGNE TVSRL VFA+ GN PNIIIAGPPG GKTT+ILCLARALLGVS KDAV
Sbjct: 60 RPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSLKDAV 119
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTME+YS
Sbjct: 120 LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYS 179
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TTRFALA N S+KIIE IQSRCA+LRY+RL+DAQ+L +++EIC+KE + ++G+ A++
Sbjct: 180 KTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAII 239
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
FTA+GD+R A+NNLQST GFG ++ +NVFKVCDEPHP+++++ML++ + DI EAYKV+
Sbjct: 240 FTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKEMLKSCSVGDIDEAYKVL 299
Query: 940 AKLCKIGYAAEDIVSNIFRV 999
+ L +GY+ EDI++NIFRV
Sbjct: 300 SHLWNMGYSPEDIITNIFRV 319
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 398 bits (981), Expect = e-109
Identities = 186/260 (71%), Positives = 222/260 (85%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP + IVGNE TVSRL VFA+ GN PNIIIAGPPG GKTT+ILCLARALLG + KDA+
Sbjct: 43 RPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM 102
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDGAQQALRRTME+YS
Sbjct: 103 LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYS 162
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TTRFALA N S+KIIEPIQSRCAVLRY++L+DAQIL +++ + KE + YT++G+ A++
Sbjct: 163 KTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAII 222
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
FTAQGD+R ALNNLQST GFG I+ +NVFKVCDEPHP++V++M++ +I EAYK++
Sbjct: 223 FTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKIL 282
Query: 940 AKLCKIGYAAEDIVSNIFRV 999
A L +GY+ EDI+ NIFRV
Sbjct: 283 AHLWHLGYSPEDIIGNIFRV 302
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 301 bits (739), Expect = 2e-80
Identities = 160/294 (54%), Positives = 207/294 (70%), Gaps = 34/294 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL-------- 375
RPQT IVGN +SRL V AK GN PN+++ GPPG GKTT++LCLAR LL
Sbjct: 13 RPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQSTDTGS 72
Query: 376 -GVS--------FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP-----PGR------ 495
G S KDAVLELNAS+DRG+DVVR KIK+FAQ K TLP G
Sbjct: 73 AGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGEGVAKDD 132
Query: 496 -----HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLR 660
HKIV+LDEADSMT AQQALRRTMEL+SSTTRFA A NNS +IIEPIQSRCAV+R
Sbjct: 133 HVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRCAVVR 192
Query: 661 YSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPD 840
+ +LSDA IL +++ + +EN+SYT++G+ A+++ A+GDLR ALN LQ+T G+G ++ D
Sbjct: 193 FKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGYGLVNAD 252
Query: 841 NVFKVCDEPHPMVVRQMLEA-XTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
NVFKVCD+PHP++V ++ A TK++I EA++ + +L GYA D+++ F+V
Sbjct: 253 NVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFFKV 306
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 285 bits (699), Expect = 2e-75
Identities = 132/260 (50%), Positives = 193/260 (74%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+T D + GN V +L AK GN PNII+ GPPG+GKT+++LCLAR +LG S K++V
Sbjct: 12 RPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQILGDSIKESV 71
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS+DRGI+ VR +IK FAQ+KV L G+HKIVILDEADS+T+GAQQALR + YS
Sbjct: 72 LELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMIISDYS 131
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
++TRF L+ N+S K+I+ IQSRC +LR++RL + +I +++EI ++E+++YT++G+ A+
Sbjct: 132 TSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGLDALT 191
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
FTA+GD+R A+NNLQ+T GFG ++ +NVFKVCD P+ ++++L+ K + A ++
Sbjct: 192 FTAEGDMRQAINNLQATFTGFGLVNRENVFKVCDVPNVDDLKKILDHMLKGEFQPAQSLM 251
Query: 940 AKLCKIGYAAEDIVSNIFRV 999
+ GY A DI + +V
Sbjct: 252 KSIFDNGYMAYDITNTFNKV 271
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 283 bits (693), Expect = 8e-75
Identities = 135/269 (50%), Positives = 187/269 (69%), Gaps = 3/269 (1%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP+ D +VGN ++ L +GN PN+++AG PG GKTT+ILCLA +LG
Sbjct: 19 IEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQA 78
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 567
K AVLELNAS+DRGI+V+R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LRR M
Sbjct: 79 KKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIM 138
Query: 568 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
ELYS TTRFALA N SEKII+ +QSRCA++RY +LSD Q+L ++++IC+ EN+ YT++G+
Sbjct: 139 ELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGL 198
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEA 927
A+ F A GDLR A+N LQST G I+ +NV +CD P P + +L+ + +A
Sbjct: 199 DALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKA 258
Query: 928 YKVIAKLCKIGYAAEDI---VSNIFRVAN 1005
+ + + K G+ DI SN+ R N
Sbjct: 259 HDIAYSMIKEGHTPYDISLTSSNVLRRFN 287
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 236 bits (577), Expect = 9e-61
Identities = 104/164 (63%), Positives = 138/164 (84%)
Frame = +1
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
ILDEADSMTDGAQQALRRTME+YS TTRFALA N S+KIIEPIQSRC LRY++L+DAQ+
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEP 867
L++++ + KE + YT++G+ A++FTAQGD+R ALNNLQST GFG+I+ +NVFKVCDEP
Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEP 120
Query: 868 HPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
HP++V++M++ +I EAYK++A L +GY+ ED++ NIFRV
Sbjct: 121 HPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRV 164
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 223 bits (546), Expect = 5e-57
Identities = 114/260 (43%), Positives = 166/260 (63%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+ D I+GN + L F + P++++ G PG+GKTT+I CLA LL +KDAV
Sbjct: 14 RPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLKDRYKDAV 73
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGI+ +R+ IK F ++K+ LP KIVILDEADSMT A QALRRTME++S
Sbjct: 74 LELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRTMEIHS 133
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TTRF LA N EKIIEPIQSRCA L + L + +++ ++ EI + E + ++ V A+
Sbjct: 134 KTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDDAVKALE 193
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
++GD+R A+N LQ+ A G I+ + V++ D P + Q ++ K+D A I
Sbjct: 194 IVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCLKKDFDGALIEI 253
Query: 940 AKLCKIGYAAEDIVSNIFRV 999
K+ ++G+ DI+ I R+
Sbjct: 254 KKVQQLGFDGNDIIDMIVRM 273
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 212 bits (517), Expect = 2e-53
Identities = 111/266 (41%), Positives = 157/266 (59%), Gaps = 1/266 (0%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP+T D ++GN ++RL FA GN PNI+ AG PG+GKTT LCLA +LG
Sbjct: 7 IERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLGAHR 66
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 567
A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LRR M
Sbjct: 67 SVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRIM 126
Query: 568 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
+ + +TRF LA NN K+IEP+QSRC VLR + A+++ + EIC KE + E +
Sbjct: 127 DDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDTEAL 186
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGH-ISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHE 924
++ + D+RS LN+LQ A I+ V K V+ Q+++ T +
Sbjct: 187 KELISISGNDVRSCLNSLQLVADANNKVITVAGVQKALSTIDVKVIDQVMKLLTSGKFDD 246
Query: 925 AYKVIAKLCKIGYAAEDIVSNIFRVA 1002
+ +I GY +DI + +FR A
Sbjct: 247 GWMLIDNQLNEGYNYDDIYNAMFRYA 272
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 211 bits (515), Expect = 3e-53
Identities = 115/272 (42%), Positives = 170/272 (62%), Gaps = 6/272 (2%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS- 384
I RP + + G E T+ RL + T N P+++ +GPPGVGKT + + +AR + G
Sbjct: 16 IEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 558
+++ ELNAS++RGID+VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSALR 132
Query: 559 RTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
RTME +SS RF L+ N S KIIEPIQSRCAV R+ RLSD I ++ I +++LS T+
Sbjct: 133 RTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITD 192
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTA--QGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
G A+++ AQGD+R A+N+LQ+ A IS + +++ +P ++ ++E +
Sbjct: 193 GGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRG 252
Query: 913 DIHEAYKVIAKLC-KIGYAAEDIVSNIFRVAN 1005
+ A K + +L + G + EDIV I+RV +
Sbjct: 253 NFRVARKELNRLLYEEGLSGEDIVGQIYRVVS 284
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 208 bits (508), Expect = 2e-52
Identities = 111/266 (41%), Positives = 168/266 (63%), Gaps = 7/266 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP F +VGN+ ++S L+ + AK + P+++I GP G GKT + L ++ +
Sbjct: 11 RPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILCNTMIPENRGAR 70
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKV-TLP-PGRHKIVILDEADSMTDGAQQALRRTME 570
+L L++ ++RGID VR +K FA+ +V T P P KIV+LDEADSMT GA QALRR M+
Sbjct: 71 MLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQALRRIMD 130
Query: 571 LYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVS 750
+YSSTTRF + NNS KIIEPIQSRCA+LR+S++ DAQ+ ++ ++C+ + Y G+
Sbjct: 131 VYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVEYDPGGIG 190
Query: 751 AVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLE-AXTKQDIHEA 927
A+ A GD+RSA+N+L S GF ++ +NV++ C P P + +++ K EA
Sbjct: 191 ALACVADGDVRSAINSLASIVSGFRRLTSENVYRTCRSPQPAKIVDIVDLLRNKGGYVEA 250
Query: 928 YKVIAKLC---KIGYAAEDIVSNIFR 996
+ + LC GY+ DI+S+ F+
Sbjct: 251 CRKLRGLCGEGGEGYSPTDILSSFFK 276
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 208 bits (508), Expect = 2e-52
Identities = 116/262 (44%), Positives = 156/262 (59%), Gaps = 3/262 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+T D IV + RL F K N P+++ AGPPG GKTT L L L G ++ +
Sbjct: 15 RPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYTEYF 74
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEL 573
LELNAS++RGIDV+RNK+K FA+ T+ PG K+V+LDEAD+MT AQQALRRTMEL
Sbjct: 75 LELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMTADAQQALRRTMEL 131
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSA 753
Y+ TRF LA N KIIEPIQSR A+ R+ L ++ ++I I E Y ++ +
Sbjct: 132 YTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALET 191
Query: 754 VVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAY- 930
+ GD+R ++N LQ+ A +G IS + VFKV P VR+M+ + +A
Sbjct: 192 IYDITMGDMRKSINILQA-ASAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQARD 250
Query: 931 KVIAKLCKIGYAAEDIVSNIFR 996
K+ L G + EDIV I R
Sbjct: 251 KLRTLLITYGLSGEDIVKQIHR 272
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 206 bits (503), Expect = 9e-52
Identities = 108/261 (41%), Positives = 161/261 (61%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
+P IVGNE T+ +++ ++ + P+++ GPPG GKTT LAR LLG K+ +
Sbjct: 9 QPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN--KEGL 66
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGID VR IK FAQ++V KI+ILDEADSMT AQQA+RR ME++S
Sbjct: 67 LELNASDERGIDTVRTTIKSFAQRRVK--DCEFKIIILDEADSMTTTAQQAMRRVMEIHS 124
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
S RF L N KI EPIQSRCA+LR+ R+ + IL ++ EI E + T E + VV
Sbjct: 125 SECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALDLVV 184
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
+ GD+R +LN LQ+ G + D + K+ P P + ++L+ K+++ EA ++
Sbjct: 185 ELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEALEMF 244
Query: 940 AKLCKIGYAAEDIVSNIFRVA 1002
++ + + D++++ FR A
Sbjct: 245 DEIWEEKFDPLDLINSFFRAA 265
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 201 bits (490), Expect = 3e-50
Identities = 101/259 (38%), Positives = 155/259 (59%), Gaps = 1/259 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP + D +V ++ S + F + G P++++ GPPG GKT+T+L LAR L G +++ +
Sbjct: 61 RPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAYRKHI 120
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS+DRGIDVVR +IK FA KV G K+VILDEAD MT AQ ALRR +E ++
Sbjct: 121 LELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALRRVIEQHT 179
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
RF + N KI IQSRC R+S L + +I KV E+ KE ++ T++G A++
Sbjct: 180 KNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAIL 239
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
++GD+R ALN LQ+ + + V+ PHP + +++++ + AY +I
Sbjct: 240 KLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLI 299
Query: 940 AKL-CKIGYAAEDIVSNIF 993
L + G A +D+++ +
Sbjct: 300 TSLKIEKGLALQDLIAGAY 318
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 198 bits (483), Expect = 2e-49
Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 1/264 (0%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RPQT D ++G+E V RL + + +++ +GP G GKTT +AR L G +
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 567
++ LELNAS++RGIDVVR++IK FA + + ++I+ LDEAD++T AQ ALRRTM
Sbjct: 77 REHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 568 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
E +S+ RF L+ N S +II+PIQSRCAV R+S L+D + ++ I +E++ TE+G+
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEA 927
A+V+ A GD+R A+N LQ+ + + V+ + P +R M+++ D +
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTAS 254
Query: 928 YKVIAK-LCKIGYAAEDIVSNIFR 996
+ + L + G A DI+ + R
Sbjct: 255 RATLDRLLTEEGIAGGDIIDQLHR 278
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 198 bits (482), Expect = 3e-49
Identities = 103/260 (39%), Positives = 157/260 (60%), Gaps = 1/260 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RPQT D +VG E V RL + + + PNI+ G GVGKTT L LA++LLG ++
Sbjct: 10 RPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGEYWQQNF 69
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS+ RGID VRN+IK F + K P R I+ LDE D+MT AQQALRR ME+Y+
Sbjct: 70 LELNASDARGIDTVRNEIKSFCKLKAVGAPFR--IIFLDEVDNMTKDAQQALRREMEMYT 127
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
T+ F L+ N S KII+PIQSRCA+ R+S + A I+ ++ I ++E + + + +V
Sbjct: 128 KTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSALENIV 187
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
+ QGD+R ++N LQ++ ++ + V+ V P VR+++ D EA ++
Sbjct: 188 YFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFMEARDLL 247
Query: 940 AKLCKI-GYAAEDIVSNIFR 996
+ I G + +D+++ ++
Sbjct: 248 RDIMIIEGVSGDDLITQFYQ 267
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 188 bits (457), Expect = 3e-46
Identities = 102/261 (39%), Positives = 153/261 (58%), Gaps = 1/261 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP++ I G + + +L F + P+++ AG G GKT+T + LA L G S+K+
Sbjct: 10 RPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGESWKENF 69
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
+E+NASN+ GIDV+RNKIK A+ + + P G KI+ LDEAD +T AQ ALRRTME+YS
Sbjct: 70 IEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRTMEMYS 128
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TTRF A N S KII PIQSR V+R+ + D I K+ EI E + +E + A+V
Sbjct: 129 ETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMV 188
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
+ GD+R A+N LQ+ G ISP ++++ P V +++ EA +++
Sbjct: 189 EVSGGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPESVNKLISRAINGLFDEARQIV 247
Query: 940 AK-LCKIGYAAEDIVSNIFRV 999
K + + G + DIV ++ +
Sbjct: 248 DKMMIEDGLSGIDIVKSVHSI 268
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 185 bits (451), Expect = 2e-45
Identities = 99/259 (38%), Positives = 149/259 (57%), Gaps = 2/259 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL-GVSFKDA 396
RPQT + ++ ++ +S + F P++++ GPPG GKT+TIL A+ L F
Sbjct: 27 RPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSM 86
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
VLELNAS+DRGID++R I FA + G K+VILDEAD+MT AQ ALRR +E +
Sbjct: 87 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKF 145
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
+ TRF L N KII +QSRC R+ L+ ++ ++ + +E + +E+G+ A+
Sbjct: 146 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 205
Query: 757 VFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKV 936
V + GD+R ALN LQST FG ++ + V+ P + +L+ QD AY+
Sbjct: 206 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 265
Query: 937 IAKLCKI-GYAAEDIVSNI 990
I +L + G A DI++ I
Sbjct: 266 ITELKTLKGLALHDILTEI 284
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 184 bits (447), Expect = 5e-45
Identities = 99/264 (37%), Positives = 150/264 (56%), Gaps = 6/264 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP + I+ +E +S + F + G P++++ GPPG GKT+TIL + + L G V
Sbjct: 20 RPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKRSSFV 79
Query: 400 LELNASNDRGIDVVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALRRTME 570
LELNAS+DRGI+V+R++IK FA+ K T K++ILDEAD MT AQ A+RR ME
Sbjct: 80 LELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIME 139
Query: 571 LYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVS 750
Y+ RF L N KI IQSRC R++ L + K ++I EN++ TE G+
Sbjct: 140 NYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGID 199
Query: 751 AVVFTAQGDLRSALNNLQSTAQGFGHISPDN--VFKVCDEPHPMVVRQMLEAXTKQDIHE 924
+++ GD+R LN LQ + ++ D + D P P +++LE TK I E
Sbjct: 200 SLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKGSIKE 259
Query: 925 AYKVIAKL-CKIGYAAEDIVSNIF 993
+Y+ ++ L GY+ +DI+ ++
Sbjct: 260 SYEFVSNLQYDKGYSTKDIMMCLY 283
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 182 bits (442), Expect = 2e-44
Identities = 100/238 (42%), Positives = 151/238 (63%), Gaps = 7/238 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV-SFKDA 396
RP+ +V ++ L KTG+ P+++ GPPG GKT+TIL LAR LLG + ++
Sbjct: 9 RPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGEGNMRER 68
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVT-LPPG--RHKIVILDEADSMTDGAQQALRRTM 567
VLELNAS++RG+DVVR+KIK F++ ++ PG K+VILDEAD+MT AQ ALRRTM
Sbjct: 69 VLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSALRRTM 128
Query: 568 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY---TE 738
E +S TRF L N KII P+ SRCA R+S L+ + +++ IC +EN+ + +
Sbjct: 129 ETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFENCSR 188
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
+ A+V +++GD+RSA+N LQ+ +Q ++P+++ ++ E V + A T Q
Sbjct: 189 SVLDAIVKSSRGDMRSAVNLLQTVSQQ-PRVTPESIVEIAGEVPERVFDMLWSAVTSQ 245
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 181 bits (440), Expect = 4e-44
Identities = 100/275 (36%), Positives = 153/275 (55%), Gaps = 16/275 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP++F I+ ++ +S L FA+ G P+++ GPPG GKT+TI+ ++R L G V
Sbjct: 14 RPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSHRHSYV 73
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPG----------RHKIVILDEADSMTDGAQQ 549
+ELNAS++RGI+ VR +IK FA+ T G K++ILDEAD MT+ AQ
Sbjct: 74 MELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMTNAAQN 133
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
+LRR ME+YSS RF L N +II PIQSRC R+ L + + + +I E L+
Sbjct: 134 SLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAKAEGLT 193
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGH-----ISPDNVFKVCDEPHPMVVRQML 894
+E + + QGD+R LN LQ TA G I+ D V P+P + ++L
Sbjct: 194 VSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPTEISKLL 253
Query: 895 EAXTKQDIHEAYKVIAKLCKI-GYAAEDIVSNIFR 996
+ ++ + + L ++ GY+ ED+V+ ++R
Sbjct: 254 QRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYR 288
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 181 bits (440), Expect = 4e-44
Identities = 100/226 (44%), Positives = 142/226 (62%), Gaps = 3/226 (1%)
Frame = +1
Query: 313 IAG--PPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 486
IAG P V TT L L+R L G +++ LELNAS++RGI+V+R K+K FA+ K +
Sbjct: 576 IAGNMPTVVHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIG 634
Query: 487 PGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYS 666
KI+ LDEAD++T AQQALRRTME++SS RF L+ N S KIIEPIQSRCA+ R+
Sbjct: 635 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 694
Query: 667 RLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
L D I ++ I E L TEEG+ A+++ A+GD+R A+N LQ+ A I+ +NV
Sbjct: 695 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENV 754
Query: 847 FKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAK-LCKIGYAAEDIV 981
F V P +R+M+ K + +A + + + L K G + ED++
Sbjct: 755 FMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVL 800
Score = 54.8 bits (126), Expect = 4e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 348
RPQ D IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 22 RPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 180 bits (438), Expect = 6e-44
Identities = 96/266 (36%), Positives = 149/266 (56%), Gaps = 6/266 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+T D + G ++ + F G P+++ GPPG GKT+TI+ LAR + G ++ + V
Sbjct: 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS+DRGIDVVRN+IK FA + G K++ILDEAD+MT+ AQ ALRR +E Y+
Sbjct: 80 LELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNALRRVIERYT 138
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TRF + AN + K+ + SRC R+ L I ++ + E L + A++
Sbjct: 139 KNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI 198
Query: 760 FTAQGDLRSALNNLQSTAQGFGH-----ISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHE 924
+ GD+R LN LQS + IS D +++ C P P ++ +L++ + D
Sbjct: 199 ELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGT 258
Query: 925 AYKVIAKLCKI-GYAAEDIVSNIFRV 999
A+ + K+ G A D++ I ++
Sbjct: 259 AHYTLNKVRSAKGLALIDLIEGIVKI 284
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 180 bits (437), Expect = 9e-44
Identities = 97/261 (37%), Positives = 149/261 (57%), Gaps = 4/261 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+T D + G E + L +G PN++ GPPG GKTT+IL +A L FK+ V
Sbjct: 12 RPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGYFKERV 70
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEL 573
LELNASN RGI++VR +K +A Q VT G +K++ILDE+D++T AQ ALRR ME
Sbjct: 71 LELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALRRMMED 130
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSA 753
++ TRF L N +I+ PI SRC R+S L + ++ IC KE S T E + A
Sbjct: 131 FTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQA 190
Query: 754 VVFTAQGDLRSALNNLQSTAQGFGH-ISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAY 930
V ++GDLR + LQ +QG H ++P ++ V + +++ +++ Y
Sbjct: 191 VSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIHLCQNGSVNDLY 250
Query: 931 -KVIAKLCKIGYAAEDIVSNI 990
K ++ + + ++A+ I+S +
Sbjct: 251 LKAMSLVVEQNFSADSILSQL 271
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 178 bits (434), Expect = 2e-43
Identities = 99/267 (37%), Positives = 148/267 (55%), Gaps = 10/267 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VSFKDA 396
RP D +V +E V L F + P+++ GPPG GKTTT+L AR +
Sbjct: 36 RPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASM 95
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKIVILDEADSMTDGAQQA 552
VLELNAS++RGIDVVRN I FAQ K + G K+VILDEAD+MT AQ A
Sbjct: 96 VLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNA 155
Query: 553 LRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
LRR +E Y+ RF + N I+ IQSRC R++ L I+ ++ I E L
Sbjct: 156 LRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKM 215
Query: 733 TEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
T +G A++ ++GD+R+ +N LQSTA F +S + V++ +P P ++++++
Sbjct: 216 TPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLND 275
Query: 913 DIHEAYKVI-AKLCKIGYAAEDIVSNI 990
+ I KL + GYA +D+++++
Sbjct: 276 PSKKCMNTIQTKLFENGYALQDVITHL 302
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 177 bits (431), Expect = 5e-43
Identities = 87/264 (32%), Positives = 148/264 (56%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP D ++ ++ ++ +F + ++II G PGVGKT+T+ C+A+ LLG
Sbjct: 8 IEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGEDM 67
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 567
LE+NA+ DRG+ + I F K + KI++LDEAD MT Q + +
Sbjct: 68 SQGYLEINAAEDRGVRSISTIIPPFC--KKVFAANKSKIILLDEADIMTSKCQYDINNMI 125
Query: 568 ELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
+ + T+F N+S KIIE IQS C +LR+ +L+D QI + +IC E + Y E+G+
Sbjct: 126 KKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGL 185
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEA 927
+ + + GD+R ++N+LQ TA F I+ + V K+C P P +R+++ + ++ +A
Sbjct: 186 RTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNLEKA 245
Query: 928 YKVIAKLCKIGYAAEDIVSNIFRV 999
+++ + K+ Y DIV++ V
Sbjct: 246 DEIMNNIIKLDYCYFDIVTSFIYV 269
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 176 bits (429), Expect = 8e-43
Identities = 96/258 (37%), Positives = 141/258 (54%), Gaps = 1/258 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP T D I G+E + L F P+++ GPPG GKTTT L + + L G F V
Sbjct: 10 RPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLCGTKFSALV 69
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGIDVVR++IK FA + TL K +ILDE+D +T AQ ALRRT+E +S
Sbjct: 70 LELNASDERGIDVVRDQIKSFASTR-TLYTNCTKFIILDESDKLTKDAQNALRRTLEQFS 128
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE-ICNKENLSYTEEGVSAV 756
+ RF N I IQSRCA +R+ LS L K++E I KE + E+ ++
Sbjct: 129 ANCRFIFICNEVHLITPAIQSRCAKMRFGPLS-PDALTKIVENITMKEGMEIDEDAKKSI 187
Query: 757 VFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKV 936
+ ++GD RS +N LQ+ + I+ ++ + P P + ++ E++ V
Sbjct: 188 IEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSPYLESFTV 247
Query: 937 IAKLCKIGYAAEDIVSNI 990
+ L K G + DI+ +
Sbjct: 248 VDNLIKAGLSLNDIIIRV 265
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 175 bits (427), Expect = 1e-42
Identities = 88/105 (83%), Positives = 91/105 (86%), Gaps = 2/105 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP D IVGNE TVSRL VFA+ GN PNIIIAGPPG GKTT+ILCLARALLG S KDAV
Sbjct: 25 RPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGASMKDAV 84
Query: 400 LELNASND--RGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADS 528
LELNASND RGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADS
Sbjct: 85 LELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 129
Score = 39.5 bits (88), Expect = 0.17
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 913 DIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
++ EAYKV+ L +GY+ EDI+ NIFRV
Sbjct: 251 NVDEAYKVVEHLWALGYSPEDIIGNIFRV 279
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 174 bits (424), Expect = 3e-42
Identities = 107/269 (39%), Positives = 149/269 (55%), Gaps = 9/269 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ D + E V+ L + + PN++ GPPG GKT+TIL AR L G F+
Sbjct: 45 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 104
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVT------LPPGRHKIVILDEADSMTDGAQQALR 558
VLELNAS++RGI VVR K+K FAQ V+ P KIVILDEADSMT AQ ALR
Sbjct: 105 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 164
Query: 559 RTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
RTME S TTRF L N +IIEP+ SRC+ R+ LSD ++++I KEN+ ++
Sbjct: 165 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD 224
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTAQ--GFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
EG++ +V ++GDLR A+ LQS + G I+ + + + + A
Sbjct: 225 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSG 284
Query: 913 DIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
+ V+ L G+AA +V+ + V
Sbjct: 285 SFDKLEAVVKDLIDEGHAATQLVNQLHDV 313
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 172 bits (419), Expect = 1e-41
Identities = 96/262 (36%), Positives = 152/262 (58%), Gaps = 8/262 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF-KDA 396
RP + + E + L +GN P++I+ GPPG GKT++IL A+ L G +F K+
Sbjct: 49 RPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGPTFYKER 108
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH------KIVILDEADSMTDGAQQALR 558
+LELNAS+DRGI +VR+KIK FAQQ V+ P + KI+ILDEADSMT AQ ALR
Sbjct: 109 ILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTTEAQSALR 168
Query: 559 RTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
R +E SSTTRF + N KIIEP+ SRC R+ + + K+ EIC E++ Y +
Sbjct: 169 RIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKTEDIEYEK 228
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTAQGF-GHISPDNVFKVCDEPHPMVVRQMLEAXTKQD 915
E + ++ + GDLR ++N LQS + + I + + ++ + + + ++ + +D
Sbjct: 229 EALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCINKLYKLLIGKD 288
Query: 916 IHEAYKVIAKLCKIGYAAEDIV 981
+ + + + GY+ + ++
Sbjct: 289 FDKLKEGVKQFLYQGYSPDQLL 310
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 172 bits (419), Expect = 1e-41
Identities = 93/232 (40%), Positives = 138/232 (59%), Gaps = 6/232 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RPQ D I+ N + L F ++ P+++ GP G GKT+TI C AR + G +
Sbjct: 24 RPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGKYINYMI 83
Query: 400 LELNASNDRGIDVVRNKIKMFAQQK--VTLPPGRH---KIVILDEADSMTDGAQQALRRT 564
LELNASN+RGI+ VR KIK F K + LP G K+VILDE DSMT AQ LR+T
Sbjct: 84 LELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQT 143
Query: 565 MELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 744
+E S TTRF L N+ +KI +QSRCA R+S L++ + ++ +IC E + Y +E
Sbjct: 144 IEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEA 203
Query: 745 VSAVVFTAQGDLRSALNNLQSTAQGF-GHISPDNVFKVCDEPHPMVVRQMLE 897
+++++ ++GD+RSA+N LQ G I+ ++V+K+ P +V + +
Sbjct: 204 INSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFD 255
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 170 bits (413), Expect = 7e-41
Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 2/256 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP +V + L K + P+++ +G GVGKTTT LC++R +LG KD
Sbjct: 12 RPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISRQILGDYAKDY 71
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
LELNAS++RGI +VR K+K F++ + KI+ILDEAD MT AQ ALRR +E
Sbjct: 72 TLELNASDERGIGMVREKVKKFSRY-AGMADVPFKIIILDEADEMTSDAQTALRRIIEDT 130
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
+ RF L ANN KII+PIQSRCA +++ + + ++ ++ EI KE + ++G+ A+
Sbjct: 131 AKICRFILIANNISKIIDPIQSRCATFKFTAVPEEDVIKRLEEIAKKEKVKADKKGLKAI 190
Query: 757 VFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKV 936
++GDLR A+N +Q+TA G IS DNV V ++L+ + EA +
Sbjct: 191 YDYSEGDLRHAINLMQATA-SLGSISEDNVKASAGLTKTTDVDEVLKIALSGKVPEAREK 249
Query: 937 IAKLCKI-GYAAEDIV 981
+ +L K+ G + D +
Sbjct: 250 MIELIKVYGMSESDFL 265
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 169 bits (412), Expect = 9e-41
Identities = 97/259 (37%), Positives = 151/259 (58%), Gaps = 2/259 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ +V + + + A+ G P+++ +G GVGKTTT LC+AR +LG +D
Sbjct: 7 RPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGPHIQDN 66
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
+LELNAS++RGI +VR+K+K F+ KI+ILDEAD MT AQ ALRRT+E
Sbjct: 67 LLELNASDERGIGMVRDKVKRFSNF-AAFEEIPFKIIILDEADEMTADAQTALRRTIEDA 125
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
S RF + ANN KII+PIQSRCAV +++ + + + +A++ +I E S EEG+ V
Sbjct: 126 SKICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDEEGLKEV 185
Query: 757 VFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKV 936
++GDLR A+N LQ+ A G ++ ++V + V +L+ D+ A +
Sbjct: 186 YEQSEGDLRHAINILQAAASS-GAVTAESVRTSAGQARKGDVDGILKRALAGDLSGARER 244
Query: 937 IAKLCKI-GYAAEDIVSNI 990
+ +L K+ G + D + +
Sbjct: 245 MVELIKVYGMSESDFLKYV 263
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 169 bits (411), Expect = 1e-40
Identities = 95/203 (46%), Positives = 121/203 (59%), Gaps = 8/203 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ + E V L +T + P+++ GPPG GKTTT L +A L G +K
Sbjct: 16 RPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 75
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVT-------LPPGRHKIVILDEADSMTDGAQQAL 555
VLELNAS+DRGI+VVR KIK FA V P KI+ILDEADSMT+ AQ AL
Sbjct: 76 VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNAL 135
Query: 556 RRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
RRTME YS TRF N +IIEP+ SRCA R+ LS+ + +++ ICN+E LS
Sbjct: 136 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLD 195
Query: 736 EEGVSAVVFTAQGDLRSALNNLQ 804
E +S + +QGDLR A+ LQ
Sbjct: 196 GEALSTLSSISQGDLRRAITYLQ 218
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 169 bits (410), Expect = 2e-40
Identities = 103/254 (40%), Positives = 137/254 (53%), Gaps = 6/254 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+ D IV E V L +TG+ P++I GPPG GKT+ L L R+L G F+ V
Sbjct: 15 RPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGDDFRLRV 74
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTMEL 573
ELNAS++RGID VR+ IK FA + +P G+ KIVILDEADSMT AQ ALRR +E
Sbjct: 75 KELNASDERGIDAVRSSIKEFAS--LAVPNGKIPFKIVILDEADSMTSAAQNALRRIIET 132
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY-TEEGVS 750
YSS TRF + N KII+PI SRCA R+ L I+ ++ +I +NLS +E+
Sbjct: 133 YSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSEDTYE 192
Query: 751 AVVFTAQGDLRSALNNLQSTAQGFG---HISPDNVFKVCDEPHPMVVRQMLEAXTKQDIH 921
+V + GDLR A+ QS A I+ + + + P+P V + D
Sbjct: 193 TLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVENYFKTCLSADWD 252
Query: 922 EAYKVIAKLCKIGY 963
L GY
Sbjct: 253 TIENATIDLVYAGY 266
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 167 bits (406), Expect = 5e-40
Identities = 100/270 (37%), Positives = 151/270 (55%), Gaps = 13/270 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP I ++ VS L+ K GN P+++ GPPG GKT+ +L L+R L G + +K+
Sbjct: 14 RPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPNEYKNR 73
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH---------KIVILDEADSMTDGAQQ 549
+LELNAS++RGI VVR+KIK + +Q V KIVILDEA+ MT AQ
Sbjct: 74 ILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMMTADAQS 133
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
ALRR +E+ S TRF + N KIIEP+ SRCA R+ +S + ++ IC++E++S
Sbjct: 134 ALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICSQEDVS 193
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG---HISPDNVFKVCDEPHPMVVRQMLEA 900
Y + + +V +QGDLR +N LQS ++ FG IS ++ V P ++ +++ +
Sbjct: 194 YEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIERIINS 253
Query: 901 XTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ AKL G++ E I +
Sbjct: 254 CKILGVESILIETAKLINEGWSVELIFKGL 283
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 165 bits (400), Expect = 3e-39
Identities = 91/251 (36%), Positives = 143/251 (56%), Gaps = 10/251 (3%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP T D ++ +E V+ + F + PN+++ GPPG GKT+TI+ LA+ + +
Sbjct: 18 IEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIALAKQIYQNKY 77
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLPPGRH---KIVILDEADSMTDGAQQAL 555
VLELNAS++RGI+ VR IK FA+ Q T ++ K+VILDEAD+MT AQ AL
Sbjct: 78 NQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQFAL 137
Query: 556 RRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
RR +E Y+ TTRF N+ +II IQSRC ++ ++S +++ IC E++
Sbjct: 138 RRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICENESIPLN 197
Query: 736 EEGVSAVVFTAQGDLRSALNNLQSTAQGFGH-----ISPDNVFKVCDEPHPMVVRQMLEA 900
E+ + +V GD+R +N LQS + + I+ V++ HP +++Q++E
Sbjct: 198 EQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGMAHPDLIKQIMEY 257
Query: 901 XTKQ-DIHEAY 930
Q +I + Y
Sbjct: 258 LMNQSEIQKTY 268
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 165 bits (400), Expect = 3e-39
Identities = 93/214 (43%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ D + + V L TGN P+++ GPPG GKT+TIL LA+ L G + +K
Sbjct: 42 RPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPNLYKSR 101
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTDGAQQ 549
VLELNAS++RGI +VR KIK FA+ V+ P +KI+ILDEADSMT+ AQ
Sbjct: 102 VLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSMTNDAQS 161
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
ALRRTME Y++ TRFAL N +II+P+ SRC+ R+ L++ L ++ I +ENL
Sbjct: 162 ALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIAKEENLH 221
Query: 730 YTEEG-----VSAVVFTAQGDLRSALNNLQSTAQ 816
E+G ++ V+ + GD+R A+ LQS ++
Sbjct: 222 LDEKGAPDEVLNEVLRISNGDMRKAITYLQSASK 255
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 165 bits (400), Expect = 3e-39
Identities = 97/274 (35%), Positives = 150/274 (54%), Gaps = 17/274 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF-KDA 396
RP+ D + + V+ L K+ N P+++ GPPG GKT+TIL L + L G K
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTDGAQQ 549
+LELNAS++RGI +VR K+K FA+ V+ P +KI+ILDEADSMT AQ
Sbjct: 92 ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQS 151
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
ALRRTME YS TRF L N +II+P+ SRC+ R+ L + + ++ I +EN+
Sbjct: 152 ALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVK 211
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISP-DNVFKVCDE------PHPMVVRQ 888
+ + ++ + GDLR + LQS ++G ++ N+ E PH +++ +
Sbjct: 212 CDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILI-E 270
Query: 889 MLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
++E D E K + K G++A +V+ +
Sbjct: 271 IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 163 bits (396), Expect = 8e-39
Identities = 91/209 (43%), Positives = 122/209 (58%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP + +VGN VS L + G PN++ GPPG GKTT+I +A L S V
Sbjct: 10 RPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLPRTS----V 65
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGI VR IK FA K+VILDEAD M+ AQ ALRR +E +S
Sbjct: 66 LELNASDERGIATVRETIKEFASTYSKTM----KLVILDEADMMSRDAQNALRRIIEDFS 121
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
+ TRF L AN+ KII PI SRC R+ + D + ++ EIC +E++ YT EG+ AV
Sbjct: 122 ANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTPEGIKAVS 179
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+ GD+R A+N++Q + G + NV
Sbjct: 180 RISMGDMRKAVNDIQGISASLGQVDESNV 208
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 162 bits (394), Expect = 1e-38
Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 12/289 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV-SFKDA 396
RP+ D IV V L +T N P++I GPPG GKT+ I LA L G + +
Sbjct: 11 RPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKENISER 70
Query: 397 VLELNASNDRGIDVVRNKIKMF-----------AQQKVTLPPGRHKIVILDEADSMTDGA 543
VLELNAS+DRGI+VVR KIK + ++ K LP K+V+LDEAD MT+ A
Sbjct: 71 VLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW--KLVVLDEADMMTEDA 128
Query: 544 QQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKEN 723
Q ALRR +E+YS+ TRF L N KI +PI SRC+ R+ + K++ IC EN
Sbjct: 129 QSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNEN 188
Query: 724 LSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAX 903
+ ++ + ++ T +GDLR A++ LQ + I+ ++V V P +V ++++A
Sbjct: 189 IDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKIIDAC 248
Query: 904 TKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLASSXKW 1050
+D+ K + + + G+ V+ IF+ N ++ + S K+
Sbjct: 249 KMKDLKLVEKTVQDIIEDGFD----VAYIFKSFNNYFVTNTEYEDSLKY 293
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 161 bits (391), Expect = 3e-38
Identities = 94/277 (33%), Positives = 147/277 (53%), Gaps = 17/277 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA- 396
RP T + +V +E +S L +GN P++++ GPPG GKTTTI A L G A
Sbjct: 24 RPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDRVRAN 83
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTL---------------PPGRHKIVILDEADSM 531
VLE+NAS+DRGIDVVR + + FA P + K+VILDEAD M
Sbjct: 84 VLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVILDEADQM 143
Query: 532 TDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEIC 711
+ AQ ALRR +E Y+ RF + N+ KII +QSRC R++ + + ++ ++ +
Sbjct: 144 SHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRFVA 203
Query: 712 NKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQM 891
+E + YT +G++A + GDLR LN +Q++A ++ ++V++V P P V +
Sbjct: 204 EQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEVTEESVYRVTGNPTPADVTAI 263
Query: 892 LEAXTKQDIHEAY-KVIAKLCKIGYAAEDIVSNIFRV 999
+ D ++ KV + + G + D+ I V
Sbjct: 264 VSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPV 300
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 160 bits (389), Expect = 6e-38
Identities = 89/241 (36%), Positives = 133/241 (55%), Gaps = 1/241 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP D +V +E +S + F P++ GPPG GKTTT + ++ L G +V
Sbjct: 14 RPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYGNDTSMSV 73
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGID VR +IK FA + P + K++ILDE+D+MT AQ ALRR ME ++
Sbjct: 74 LELNASDERGIDTVRMRIKDFASSRSLFGP-KIKLIILDESDAMTGAAQAALRRIMEQFT 132
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
S RF L N EK+I ++SRC R+ L D + I + E L+ E G+ A++
Sbjct: 133 SNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMDEGGLKALL 192
Query: 760 FTAQGDLRSALNNLQSTA-QGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKV 936
GDLR ++N +Q+T+ I+ NV++ P P + + LE + + EA
Sbjct: 193 KLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDMARTLEQLINKPLDEALNT 252
Query: 937 I 939
+
Sbjct: 253 L 253
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 158 bits (383), Expect = 3e-37
Identities = 92/230 (40%), Positives = 133/230 (57%), Gaps = 12/230 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV-SFKDA 396
RP T D + G++ ++ + F P++++ GPPG GKT+TIL LAR + G + +
Sbjct: 50 RPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQM 109
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQK--VTLPP---------GRHKIVILDEADSMTDGA 543
VLELNAS+DRGIDVVR +IK FA K ++ P +K++ILDEAD+MT A
Sbjct: 110 VLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEADAMTATA 169
Query: 544 QQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKEN 723
Q ALRR ME Y++ TRF + AN + K+ + SRC R+S L + I + V + KE
Sbjct: 170 QMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEE 229
Query: 724 LSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHP 873
+ E V ++V ++GD+R ALN LQ+ + N K D+P P
Sbjct: 230 VKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPK--DQPRP 277
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 156 bits (378), Expect = 1e-36
Identities = 93/214 (43%), Positives = 122/214 (57%), Gaps = 15/214 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+T D + VS L + PN++ GPPG GKT+ IL LAR L G + + V
Sbjct: 32 RPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQLFGPLYSERV 91
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVT---------------LPPGRHKIVILDEADSMT 534
LELNAS++RGI V+R K+K FA V+ +PP +K++ILDEADSMT
Sbjct: 92 LELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPP--YKLIILDEADSMT 149
Query: 535 DGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICN 714
AQ ALRRTME TTRF L N +IIEPI SRCA R+ L + A++ I +
Sbjct: 150 APAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRYIAD 209
Query: 715 KENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ 816
ENLS T+E + ++ +GDLR + LQ Q
Sbjct: 210 AENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQ 243
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 155 bits (377), Expect = 2e-36
Identities = 79/198 (39%), Positives = 124/198 (62%), Gaps = 1/198 (0%)
Frame = +1
Query: 406 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSST 585
L+ S++RGIDV+R K+K FA+ + + R KI+ LDEAD++T +QQALRR ME+YS
Sbjct: 385 LHNSDERGIDVIRTKVKNFARTR-PMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDA 443
Query: 586 TRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFT 765
RF LAAN S II+PIQSRC V ++++L ++ I ++ +I E + TE+ + A+V+
Sbjct: 444 CRFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYV 503
Query: 766 AQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAK 945
++GD+R A+N LQ+ A I D VF++ P VR+M+ D A +++ +
Sbjct: 504 SEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHE 563
Query: 946 -LCKIGYAAEDIVSNIFR 996
L + G + ED+V + R
Sbjct: 564 LLTRYGMSGEDVVRQVHR 581
Score = 76.6 bits (180), Expect = 1e-12
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+ D IV E V RL + G+ PN++ AGPPG GKTT LCLAR L G ++D
Sbjct: 18 RPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFGEHWRDNF 77
Query: 400 LELNAS 417
LELNAS
Sbjct: 78 LELNAS 83
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 153 bits (370), Expect = 1e-35
Identities = 84/177 (47%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+ + +V V L K G+ PN++ GPPG GKT+TIL AR L G +K+ V
Sbjct: 39 RPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERV 98
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKV--------TLPPGRHKIVILDEADSMTDGAQQAL 555
LELNAS++RGI VVR KIK FAQ + PP KI++LDEADSMT AQ AL
Sbjct: 99 LELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPP--FKIIVLDEADSMTGAAQAAL 156
Query: 556 RRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL 726
RRTME S +TRF L N +IIEP+ SRC R+ L + +I+ ++ IC +E+L
Sbjct: 157 RRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 213
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 151 bits (366), Expect = 3e-35
Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 16/270 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILCLARALLGVSF-KD 393
RP+T + + V L K G N P+ + GPPG GKTT+IL +A L G + +
Sbjct: 32 RPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHELFGPDYIRS 91
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQ-------QKVTLPPGR------HKIVILDEADSMT 534
V ELNAS+DRGI VVR K+K+FAQ VT G+ K++ILDEAD++
Sbjct: 92 RVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLIILDEADALL 151
Query: 535 DGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICN 714
AQ ALRR ME +S TRF + N +II+PI SRCA R+ L + + ++ +
Sbjct: 152 PDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQ 211
Query: 715 KENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEPHPMVVRQM 891
E ++ + + A+ + GDLR A+ +LQS + G +S ++ V V++Q
Sbjct: 212 AEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQQY 271
Query: 892 LEAXTKQDIHEAYKVIAKLCKIGYAAEDIV 981
L A + E + +L G+AA ++
Sbjct: 272 LSALFSHRLEEVIQASRRLVAEGFAAAQVL 301
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 151 bits (366), Expect = 3e-35
Identities = 92/229 (40%), Positives = 130/229 (56%), Gaps = 27/229 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF-KDA 396
RP+T + + T+ L+ ++ N P+++ GPPG GKT+TIL LA+ L G K
Sbjct: 40 RPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSR 99
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH-------------------------K 501
VLELNAS++RGI +VR K+K FA+Q++++ P + K
Sbjct: 100 VLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFK 159
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDA 681
I++LDEADSMT AQ ALRRTME YS TRF L N +II+P+ SRC+ R+ L
Sbjct: 160 IIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQG 219
Query: 682 QILAKVIEICNKENLSYTEEGVS-AVVFTAQGDLRSALNNLQSTAQGFG 825
+ +V +I E++ + GVS +V A GDLR A+ LQS A+ G
Sbjct: 220 NAVRRVDDIAKLEDVK-LDAGVSEELVRVADGDLRKAITFLQSAARLVG 267
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 149 bits (362), Expect = 1e-34
Identities = 73/89 (82%), Positives = 78/89 (87%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RPQ F+ IVGNE TVSRL VFA GNAPNIIIAGPPGVGKTTTILCLAR LLG +F
Sbjct: 30 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARILLGENF 89
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQK 474
++AVLELNASN+RGIDVVRNKIKMFAQQK
Sbjct: 90 REAVLELNASNERGIDVVRNKIKMFAQQK 118
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 147 bits (355), Expect = 7e-34
Identities = 91/266 (34%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP T + +V +E ++ + + G P++I G PG GKTT I L L G + V
Sbjct: 9 RPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKALMNELFGDAVSTHV 68
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPG-----RHKIVILDEADSMTDGAQQALRRT 564
LELNAS+D G+DV+R +K F L + KIVI+DE D M+ AQ +LRR
Sbjct: 69 LELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKIVIMDECDHMSSVAQASLRRL 128
Query: 565 MELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 744
ME RF L N EK++ I SRC R+ + L + +I + E +
Sbjct: 129 METSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVPRESCLLMLEKIADAEGMQMAPGA 188
Query: 745 VSAVVFTAQGDLRSALNNLQS--TAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDI 918
++A+ GDLR A+N LQS + D+V+K+ +PHP + R++L
Sbjct: 189 LAAIHAVTDGDLRQAINVLQSLHLMTEKELATADDVYKLVAKPHPALGRELLR---PMPY 245
Query: 919 HEAYKVIAKLCKIGYAAEDIVSNIFR 996
E Y I G +AED+V +FR
Sbjct: 246 VEKYGQIQGCLAAGCSAEDVVQCVFR 271
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 145 bits (351), Expect = 2e-33
Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 14/246 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ ++ VS + +T N P++I GPPG GKT+ L +AR + G+ ++
Sbjct: 14 RPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGLEGMRER 73
Query: 397 VLELNASNDRGIDVVRNKIKMFAQ-----QKVTLPPGR----HKIVILDEADSMTDGAQQ 549
VLELNAS++RGIDVVR++IK + + +V R +K++ILDEAD +T AQ
Sbjct: 74 VLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITADAQA 133
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
ALRR +E YSS +RF L N KII PI SRC+V + + + ++ ICN+E ++
Sbjct: 134 ALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKYICNQEGIT 193
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQ----STAQGFGHISPDNVFKVCDEPHPMVVRQMLE 897
+ + ++ + + GD+R ++ LQ STA + I+ + ++ V +P VV + E
Sbjct: 194 FDPKFLTTI---SSGDMRKSITILQVILGSTACLYNEITENAIYSVSGKPPKRVVESIFE 250
Query: 898 AXTKQD 915
+ +
Sbjct: 251 VCRRPE 256
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 144 bits (349), Expect = 4e-33
Identities = 76/196 (38%), Positives = 112/196 (57%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP +V +E + + FA G P+++ GPPG GKT+T+L L R L + + V
Sbjct: 22 RPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTRELYESNHSNMV 81
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS+ RGI++VR++I+ FA K+VI+DE DS+T AQ ALRR ME Y+
Sbjct: 82 LELNASDSRGINIVRDEIQSFASTARPFSSA-FKLVIMDECDSLTKDAQFALRRIMEKYA 140
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TRF L N + KII IQSRC R++ + +L ++ + E + + + +
Sbjct: 141 QHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISGASLQTIQ 200
Query: 760 FTAQGDLRSALNNLQS 807
+GD+R +LN LQS
Sbjct: 201 RLGEGDMRRSLNVLQS 216
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 143 bits (347), Expect = 7e-33
Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 8/203 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VSFKDA 396
RP T +VG + T+S L F P+++ GPPG GKT+TIL LAR L G
Sbjct: 26 RPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGDADMSQM 85
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQ----KVTL---PPGRHKIVILDEADSMTDGAQQAL 555
VLELNAS+DR + V+ +IK FA KV L P K+VILDEAD+M AQ AL
Sbjct: 86 VLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLVILDEADTMDHTAQMAL 145
Query: 556 RRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
RR +E Y++ TRF + NN K++ + SRCA LR+ L + I ++++ EN+
Sbjct: 146 RRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQVATTENIQVR 205
Query: 736 EEGVSAVVFTAQGDLRSALNNLQ 804
E + + T+ GD+R AL LQ
Sbjct: 206 PEALEYLSTTSHGDMRQALAVLQ 228
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 142 bits (343), Expect = 2e-32
Identities = 82/207 (39%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV-SFKD 393
RP T + V N + +F + P++++ GPPG GKT+TIL LAR + GV + +
Sbjct: 78 RPNTLEDAVPNAPNIDWTNPLFVQ--RLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQ 135
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEL 573
VLELNAS+DRGIDV ++ G K++ILDEAD+MT AQ ALRR ME
Sbjct: 136 MVLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIILDEADAMTATAQMALRRIMEK 195
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSA 753
Y++ TRF + AN + K+ + SRC R+S L + I V ++ KE + E + +
Sbjct: 196 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEAIDS 255
Query: 754 VVFTAQGDLRSALNNLQSTAQGFGHIS 834
+V ++GD+R ALN LQ+ H S
Sbjct: 256 LVQLSKGDMRRALNVLQACHASTPHPS 282
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 140 bits (340), Expect = 5e-32
Identities = 82/253 (32%), Positives = 126/253 (49%), Gaps = 7/253 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VSFKDA 396
RP + GN+ + L F PN+I+ GPPG GKT++I+ +A++ G +
Sbjct: 9 RPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNISIM 68
Query: 397 VLELNASNDRGIDVVRNKIKMFAQ-QKVT-LPPGRHKIVILDEADSMTDGAQQALRRTME 570
LELNA + R I +R++I F + VT K+VILDEAD +T AQ+ALR +E
Sbjct: 69 TLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHLIE 128
Query: 571 LYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVS 750
S RF L N ++ ++SRC +S + + Q+ + E+ KE+L +EEG++
Sbjct: 129 TTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEEGLN 188
Query: 751 AVVFTAQGDLRSALNNLQSTAQGFGH---ISPDN-VFKVCDEPHPMVVRQMLEAXTKQDI 918
AVV GD R +N LQS + G + D V+ C P P ++ E Q
Sbjct: 189 AVVKVCAGDARQGINLLQSLSLGDATTLVVRDDQAVYATCGLPSPSQTSEIFEVLLNQSF 248
Query: 919 HEAYKVIAKLCKI 957
Y + ++
Sbjct: 249 SVGYTTLTSFVEL 261
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 136 bits (328), Expect = 1e-30
Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 7/207 (3%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP+ + I ++ + K G + + GPPG GKT+ IL + R + F
Sbjct: 10 IEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFKEHF 69
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQ---KVTLPPGR----HKIVILDEADSMTDGAQ 546
++ V+E NAS+DRGI+ VR KI A++ ++ L G +KI+ILDEADSMTD AQ
Sbjct: 70 QNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQ 129
Query: 547 QALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL 726
ALR +E YS+ TRF N KI + I+SRC+ + + +LSD ++ K+ +I KE++
Sbjct: 130 DALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESM 189
Query: 727 SYTEEGVSAVVFTAQGDLRSALNNLQS 807
+ + ++ + GD+R A+ LQ+
Sbjct: 190 ELPKNILHTIIDVSNGDMRKAIMLLQN 216
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 135 bits (326), Expect = 2e-30
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 5/203 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+T D I + V+ L + + P+++ GPPG GKT+ L R L + F D
Sbjct: 22 RPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDR 81
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQALRRT 564
VL+LNAS++RGI VVR KI+ F++ + KI+ILDE D+MT AQ A+RR
Sbjct: 82 VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRV 141
Query: 565 MELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 744
+E +S TTRF L N ++I P+ SRCA R+ L + ++ IC+ E +++
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 745 VSAVVFTAQGDLRSALNNLQSTA 813
+ V+ ++GDLR A+ LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 131 bits (317), Expect = 3e-29
Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 27/286 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA- 396
RP D I+ + V ++GN P++++ GP G GKTT I + G F A
Sbjct: 10 RPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGPRFWRAR 69
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK---------IVILDEADSMTDGAQQ 549
V E NAS DRGI +VR +IK A+ + + P K ++ILDEAD++T +Q
Sbjct: 70 VSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADALTRESQA 129
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEIC------ 711
ALRR +E +S TTRF + N +II PI SRCA +S L I+ ++ IC
Sbjct: 130 ALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLESICYAEMHQ 189
Query: 712 ----NKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGH----ISPDNVFKVCDEP 867
N++ S E + V +QGD+R+A+ LQ+T Q + +SP +V + +
Sbjct: 190 LRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMEEELSPKHVHLLAGKI 249
Query: 868 HPMVVRQMLEAXT--KQDIHEAYKVIAK-LCKIGYAAEDIVSNIFR 996
++ ++E T + + + K + +IGY A D++ ++R
Sbjct: 250 PDELIASLIEKMTDVSLPVESLIEYLHKSVVRIGYPALDVIRELWR 295
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 124 bits (298), Expect = 6e-27
Identities = 71/137 (51%), Positives = 86/137 (62%), Gaps = 7/137 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ D + E V+ L + + PN++ GPPG GKT+TIL AR L G ++
Sbjct: 40 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQR 99
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKV--TLPPGR----HKIVILDEADSMTDGAQQALR 558
VLELNAS++RGI VVR K+K FAQ V T P G+ KI+ILDEADSMT AQ ALR
Sbjct: 100 VLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALR 159
Query: 559 RTMELYSSTTRFALAAN 609
RTME S TTRF L N
Sbjct: 160 RTMEKESRTTRFCLICN 176
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 /
JR1)
Length = 336
Score = 111 bits (266), Expect = 4e-23
Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 21/286 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP+ D I+G + V L F+ +G+ P+++I+GP G GKT + CLA+ L G ++K
Sbjct: 8 RPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAKRLYGENWKANT 67
Query: 400 LELNASN-----------DRGIDVVRNK-------IKMFAQQKVTLPP--GRHKIVILDE 519
+A++ D ++ K K + ++ P K+++ ++
Sbjct: 68 TVFSATDLLGRGRSALETDERFSMIYRKDRSLIVNFKQIVKWYASMRPLDADFKLMVFED 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
A +T AQQALRRTME YS+T RF II I SRC L ++ + + +L ++
Sbjct: 128 AHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRCLPLFFAPVESSLVLTRL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMV 879
EI E + + + +V+ AQGDLR A+ LQ A+ ++ ++ V
Sbjct: 188 EEILAAEGAAVPADDIDLIVYAAQGDLRRAIMYLQIAARAEQEF---DLAEISRSETTNV 244
Query: 880 VRQMLEAXTKQDIHEAYKVIAKL-CKIGYAAEDIVSNIFRVANFRY 1014
A + A ++ L + G +A ++V + +VA Y
Sbjct: 245 ATSAFVALRDGNFDAARRIAESLMIEYGLSAREVVGELRQVARREY 290
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 109 bits (262), Expect = 1e-22
Identities = 60/115 (52%), Positives = 78/115 (67%), Gaps = 13/115 (11%)
Frame = +1
Query: 301 PNIIIAGPPGVGKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV 477
P+++ GPPG GKT+TIL LA++L G ++ +LELNAS++RGI +VR KIK FA+ ++
Sbjct: 5 PHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQL 64
Query: 478 TLPP------------GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAA 606
+ PP KI+ILDEADSMT AQ ALRRTME YS TRF L+A
Sbjct: 65 SHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLSA 119
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 109 bits (261), Expect = 2e-22
Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 26/286 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP TF+ IVG+E V+ L ++ N P++++ G GK + + LARAL G +++ +
Sbjct: 82 RPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLARALYGEQWENNL 141
Query: 400 LELNASN--DR---------------GID----VVRNKIKMFAQ-----QKVTLPPGRHK 501
+ASN DR G D + + I +F Q + +
Sbjct: 142 AIFDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQKTVISVFKQVINEYAGMAALDSDFR 201
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDA 681
++ +D A++++ AQ ALRR ME +S T RF L+ + ++I ++SR L + R SDA
Sbjct: 202 MIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRSRGLNLFFDRASDA 261
Query: 682 QILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCD 861
+ A + I E T++GV A+V+ A GDL A+ LQ + I+ + V++V
Sbjct: 262 TVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVLQIASMKRREITANTVYEVDL 321
Query: 862 EPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
E P + ++L A D A K I L + + DI + RV
Sbjct: 322 ERIPEGILELLHASLAGDFKTARKRIDDLL-MEESGADITHRLRRV 366
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 106 bits (255), Expect = 1e-21
Identities = 77/198 (38%), Positives = 110/198 (55%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP++ D G E + L + G+ PN+++ GPPG GKTT LA
Sbjct: 8 RPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFAHLLA---------SQK 57
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGI V+R KIK++A TL G+ K VILDE +++T AQ LRR +E S
Sbjct: 58 LELNASDERGISVIREKIKVYAS---TL--GKDKTVILDECENLTSDAQHCLRRVIE-DS 111
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
TRF N KII P++SR ++++ ++++IL I +KE L Y +E ++
Sbjct: 112 VNTRFIFITNYPSKIIGPLRSRLVSVKFTP-TESKILE---NIGSKEGLGYDKELYHRIL 167
Query: 760 FTAQGDLRSALNNLQSTA 813
DLR A+N LQ A
Sbjct: 168 KLCGNDLRRAINVLQGVA 185
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 104 bits (249), Expect = 5e-21
Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 1/195 (0%)
Frame = +1
Query: 280 FAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKM 459
F K + PN ++ G G GKT T+ + + +L+LNAS + I ++RNKIK+
Sbjct: 16 FFKINSFPNFLLYGSSGTGKTFTVENFLKTARNKNIISRILKLNASQNNSISIIRNKIKI 75
Query: 460 FAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQ 639
F + + + K+V++DEAD ++ +Q+ALRR +E +S ++RF L N +IIEP+Q
Sbjct: 76 FCRSSIQSK--KLKVVVIDEADLLSVISQEALRRIIEKFSLSSRFILICNYPTRIIEPLQ 133
Query: 640 SRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ-STAQ 816
SR + + L+ I+ + K+N+ Y + + + + GD R N L+ +
Sbjct: 134 SRFILFKIENLNFENIIKLIKFYILKKNICYKLDFIENDIHSTNGDKRKLKNCLKLDLNR 193
Query: 817 GFGHISPDNVFKVCD 861
F H + + F + D
Sbjct: 194 IFMHFNSNRNFIIND 208
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 103 bits (246), Expect = 1e-20
Identities = 83/265 (31%), Positives = 127/265 (47%), Gaps = 22/265 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL------LG 378
RP+ F IVG E L K + I AGP G GKTTT LA++L G
Sbjct: 9 RPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCEKNQFG 68
Query: 379 VSFKDA-------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
+ V+EL+A+++RGID +R KIK + V P G++K+ I+
Sbjct: 69 EPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIR-KIK----EGVNFTPVMGKYKVYII 123
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E F LA N EKI I SRC VL + +S+ I++
Sbjct: 124 DEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENIIS 183
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHP 873
K+ +C KE T E + + A+G LR AL+ L+ Q + + K+ DE
Sbjct: 184 KLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLE---QVIRYTGGEVTEKIVDEALG 240
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKL 948
++ + +E + ++ ++I K+
Sbjct: 241 LISEETIEKFIEATLNNDRELIEKI 265
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 101 bits (241), Expect = 5e-20
Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VSFKDA 396
RP + D ++ + ++ + F K P+++ GPPG GKT+TIL +A+ L F
Sbjct: 8 RPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKEFNSM 67
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 561
VLELNAS+DRGI +VR I FA + G K+VILDEAD+MT+ AQ ALRR
Sbjct: 68 VLELNASDDRGIGIVRGSILNFASTRTIFKSG-FKLVILDEADAMTNDAQNALRR 121
>UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: DNA polymerase III, gamma/tau subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 575
Score = 101 bits (241), Expect = 5e-20
Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 10/270 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEX---TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 390
RP++FD +VG + T+ +TG+A + +GP G GKT+ AR + G++ +
Sbjct: 13 RPRSFDDMVGQKIITQTLKNAIATQQTGHA--YLFSGPRGTGKTSAAKIFAREVNGIAPE 70
Query: 391 --DA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 552
D+ ++E++A+++ G+D +RN I+ A +KI I+DE ++ GA A
Sbjct: 71 TDDSQIPDIIEIDAASNNGVDEIRN-IRDGANYAPI--ESEYKIYIIDEVHMLSSGAFNA 127
Query: 553 LRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
L +T+E + +F LA +KI I SR + R+ + I A++ EI KE +S+
Sbjct: 128 LLKTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRIDNDTIQARMAEILQKEGISF 187
Query: 733 TEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTK 909
++ + + A+G +R AL+ L Q A G H++ +N +V + L+ +
Sbjct: 188 DDDALHIIANVAEGGMRDALSILDQVLAFGADHVTLENALQVTGSTTASQLVTYLQQVSN 247
Query: 910 QDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
D A + + + G A V+++ V
Sbjct: 248 YDTESALQTLHDILLEGKDAVRFVADLLGV 277
>UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4;
Thermococcaceae|Rep: Replication factor C large subunit
- Pyrococcus abyssi
Length = 479
Score = 99 bits (238), Expect = 1e-19
Identities = 59/206 (28%), Positives = 110/206 (53%), Gaps = 6/206 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILCLARALLGV 381
RP+ I+ E +S++ + + GN P +++AGPPG GKTTT+ LAR
Sbjct: 11 RPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALAR----- 65
Query: 382 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 561
+ V+ELNAS++R D + ++ A + + R KI+ LDEAD++ + +
Sbjct: 66 EYNFEVIELNASDERTYDKIARYVQ--AAYTMDILGKRRKIIFLDEADNIEPSGAPEIAK 123
Query: 562 TMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEE 741
++ + +AAN+ ++ + I+ R ++ Y RL+ ++ ++ I +E ++ +E
Sbjct: 124 LID--RARNPIIMAANHYWEVPKEIRDRAELVEYKRLTQRDVINALVRILKREGITVPKE 181
Query: 742 GVSAVVFTAQGDLRSALNNLQSTAQG 819
+ + A GDLR+A+N+LQ+ G
Sbjct: 182 VLVEIAKRASGDLRAAINDLQTVVAG 207
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 99.5 bits (237), Expect = 1e-19
Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 9/218 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNA--PNI---IIAGPPGVGKTTTILCLARALLGVS 384
RP+ D I+GN VS L +A P + I+ GPPGVGKT+ L LA +
Sbjct: 9 RPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASEM---- 64
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD----GAQQA 552
+ELNAS+ R +++++ I A Q T GR ++VILDEAD++ G A
Sbjct: 65 -DWDYIELNASDQRTAEIIKS-IAGPASQVSTFS-GRRRLVILDEADNLHGTYDRGGAAA 121
Query: 553 LRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
+ R ++ ++T L AN I +P++ C +++ + I + + EIC E +
Sbjct: 122 ILRVIK--NATQPVILIANEYYNIEKPLRDACRGVQFRSIRAQTIASLLREICRSEGIEC 179
Query: 733 TEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
E V + + GDLRSA+N+L++ A+G H+ ++V
Sbjct: 180 EPEAVMHIAAMSGGDLRSAINDLEAAARGLKHLRLEDV 217
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 98.3 bits (234), Expect = 3e-19
Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 30/287 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
R +T + ++GNE V L+ ++G P++I GP GKTT L LAR L G ++K+
Sbjct: 13 RAETLEGMLGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALARELYGETWKNNF 72
Query: 400 LELNASN--DRGID-VVRNK------------------IKMFAQQKVTLPPGRHKI---- 504
+ NAS+ D+G +VR+K I +F ++ V G I
Sbjct: 73 VYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIYKSVIDIF-KEVVNEYAGMASIDADY 131
Query: 505 --VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSD 678
+ +D A+S++ AQ ALRR ME YSST RF L+ K+I P++SR + ++ + D
Sbjct: 132 KIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLISPLRSRGLQVFFAYVPD 191
Query: 679 AQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA--QGFGHISPDNVFK 852
+ + + I E L ++ + AV++ A+G++ A+ LQ A I+ + V++
Sbjct: 192 SLLKTHLERIALAEKLKLSDGALDAVLYLAKGNVARAVQTLQLAALRSEGAEITEEIVYE 251
Query: 853 VCDEPHPMVVRQMLEAXTKQDIHEAYKVI-AKLCKIGYAAEDIVSNI 990
+ + ++LEA D ++I + + G + DI +
Sbjct: 252 ATMKGRDETIDELLEAALAGDFARGRQLIDGMIIEKGLSGTDIFEGL 298
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 98.3 bits (234), Expect = 3e-19
Identities = 81/292 (27%), Positives = 134/292 (45%), Gaps = 23/292 (7%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP TFD I+G E L A T N P+++++GPPG GK+ + R L G ++
Sbjct: 4 IEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAVEVTLRELYGDTW 63
Query: 388 KDAVLELNASN--DRG---IDVVRNKIKMFAQQKVTLPPGRH---------------KIV 507
+D V S+ +RG ++ + ++ + L +H K++
Sbjct: 64 QDNVTIFRTSDLMERGKYALESDERFLHLYRSDESFLSNFKHIISSYASIRPINAEFKVM 123
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
+ ++A +++ Q ALRRTME YS+T RF + +I PI+SRC L ++ LS I
Sbjct: 124 LFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPLFFTPLSRDII 183
Query: 688 LAKVIEICN--KENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCD 861
+ I N E +++ +V A GDLR A+ LQ + +PD + +
Sbjct: 184 RDCLNTIQNDIPEPDRVSDDETGLIVAAAGGDLRKAIMYLQVRVETKIPFNPDTLSRTDT 243
Query: 862 EPHPMVVRQMLEAXTKQDIHEAYKVIAKL-CKIGYAAEDIVSNIFRVANFRY 1014
+ + L A +DI A K + L G + +I+S + +V Y
Sbjct: 244 QEEACLA---LHAMKAKDIVAAQKRLQDLMITQGLSGREIISTLLQVTEREY 292
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 96.7 bits (230), Expect = 1e-18
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP++ D + + F + G PN+++ G GVGKTT + + G S+
Sbjct: 13 RPKSVDDCILPTSIKNSFKAFVEQGEIPNLLLTGSAGVGKTTIAKAVCEQI-GASY---- 67
Query: 400 LELNASND-RGIDVVRNKIKMFAQQKVTLPPGR-HKIVILDEADSMTDGAQQALRRTMEL 573
+ +N S++ R +D VRN+++ FA V+L G HK+VI+DEAD+ T Q +LR +E
Sbjct: 68 IVINGSDEGRFLDTVRNRVRQFATT-VSLTSGAPHKVVIIDEADNTTHDVQLSLRTAVEE 126
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRY------SRLSDAQILAKVIEICNKENLSYT 735
+ RF N KIIEP+ SRC V+ + ++ Q ++ I + + Y
Sbjct: 127 FHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQILQGQFFVRLKGILDDNKIVYD 186
Query: 736 EEGVSAVVFTAQGDLRSALNNLQSTA 813
++ ++ ++ D R +N Q A
Sbjct: 187 DKIIAKLIKRYYPDWRRLINEAQRHA 212
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 96.7 bits (230), Expect = 1e-18
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Frame = +1
Query: 607 NNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRS 786
N KII PIQSRCAV R+S L I K+ EI KE L+ TE G+ A+++ ++GD+R
Sbjct: 1669 NYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRK 1728
Query: 787 ALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKL-CKIGY 963
A+N LQ+ A I + V+KV P V++M+E EA ++ KL + G
Sbjct: 1729 AINVLQTAAALSDVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEWGM 1788
Query: 964 AAEDIVSNIFRVAN 1005
+ EDI++ +FR N
Sbjct: 1789 SGEDILNQMFREIN 1802
Score = 67.3 bits (157), Expect = 7e-10
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Frame = +1
Query: 406 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSST 585
L+ S++RGIDV+R K+K FA+ K + KI+ LDE+D++T AQ ALRRTME YS
Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTK-PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDV 1118
Query: 586 TRFALAA-NNSEKIIEPIQSRCAVLRYSRLSDAQILAKVI 702
RF L+ KI P + + + ++ + + L V+
Sbjct: 1119 CRFILSCLTGDAKITLPDEREIKIEDFIKMFEERKLKHVL 1158
Score = 46.4 bits (105), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 348
RP+T D IVG + V RL + + + P+++ +GPPGVGK T
Sbjct: 14 RPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
Score = 34.7 bits (76), Expect = 4.7
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 322 PPGVGKTTTILCLARALLGVSFKDAVLELNAS 417
P + TT LCLAR L G +++D LELNAS
Sbjct: 596 PTILHNTTAALCLARDLFGENWRDNFLELNAS 627
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 95.9 bits (228), Expect = 2e-18
Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Frame = +1
Query: 304 NIIIAGPPGVGKTTTILCLARAL----------LGVSFKDAVLELNASNDRG----IDVV 441
N+++ GP G GKT + AR + L ++ + + SND ID
Sbjct: 35 NLLVHGPKGSGKTAAVRAFAREVHENPDADFTELNMADVFGMTKKEVSNDPRFASFIDSK 94
Query: 442 RNK-------IKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRF 594
R + I ++ + P G +K ++LD A+ M + QQALRR ME Y T+F
Sbjct: 95 RRRESSKADLINHVLKESASYSPVSGSYKTILLDNAEGMREDFQQALRRVMEQYYEATQF 154
Query: 595 ALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQG 774
+A +I PI+SRC + + + + + +I E + + ++G+ V A+G
Sbjct: 155 VIATRQPSAVIPPIRSRCFPVVMREPTHEETASVLEDIVTAEGVDHDDDGIEYVAGYAEG 214
Query: 775 DLRSALNNLQSTAQGFGHISPDNVFKVCDE-PHPMVVRQMLEAXTKQDIHEAYKVIAK-L 948
DLR+A+ Q+TA+ G ++ D F+ + V QM++A +A + L
Sbjct: 215 DLRTAVLAAQTTAEAEGEVTMDAAFETLNAIEADDQVEQMVDAAEDGRFTDARSTLDDLL 274
Query: 949 CKIGYAAEDIVSNIFRVANFRY 1014
GY A DI+ ++ VA RY
Sbjct: 275 VDEGYGASDILDDVLEVARSRY 296
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 95.1 bits (226), Expect = 3e-18
Identities = 78/262 (29%), Positives = 121/262 (46%), Gaps = 22/262 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP+ F +VG K + I AGP G GKTT LA++L
Sbjct: 9 RPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCENPQEI 68
Query: 373 ---------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ + +F D VLEL+A+++RGID +R KI+ G++K+ I+D
Sbjct: 69 EPCNMCNACISIDKGNFMD-VLELDAASNRGIDEIR-KIRETVNYHTA--QGKYKVYIID 124
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
EA +T A AL +T+E S F LA N EKI + I SRC V+ + +S+ I+ +
Sbjct: 125 EAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDIIKR 184
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEPHP 873
+ +C E + + E + + A G LR AL L+ G I ++V +
Sbjct: 185 LEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRETLGLIPD 244
Query: 874 MVVRQMLEAXTKQDIHEAYKVI 939
++ ++LE DI K+I
Sbjct: 245 TIIEKLLENLENNDIKSTLKLI 266
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 94.7 bits (225), Expect = 4e-18
Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQ+ + + G + L + P ++++GP G GKT+T +A +L GV+
Sbjct: 18 RPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARIIAMSLNCEKGVTT 77
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
V+EL+A++ G+D +R K+ A R ++ I+DE
Sbjct: 78 TPCGECKNCQAIQNGNSLDVVELDAASHNGVDDIR---KLVADASYAPFSARTRVFIIDE 134
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
A +++ AQ A +T+E ++ T+F LA K++E ++SRC LR+ +S +++ ++
Sbjct: 135 AHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQSEVAKRL 194
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQST---AQGFGHISPDNVFKVCDEPH 870
EI E S + + A+ +++G +R ++ L +G + D V++V +
Sbjct: 195 EEIAKNEGFSIDDSCLQAIARSSKGGMRDSIQLLFEVFCHKEGDEPLKVDKVYEVTKALN 254
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDI 978
P V +L A K D +Y ++ KI +A DI
Sbjct: 255 PTQVEFLLSAVAKGD---SYNLVRCCQKIEESALDI 287
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 94.7 bits (225), Expect = 4e-18
Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIII-AGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ+ V E PN+++ + PG GKTT +ARA+L
Sbjct: 17 RPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTT----VARAVLA-DMGYE 71
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
VL +NAS+ RGI +V+N + F V+ G K VILDEAD++T AQ+ALR +E Y
Sbjct: 72 VLFVNASSSRGIGLVQNDLPAFCST-VSFS-GNPKAVILDEADNLTPDAQKALRGLIEQY 129
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRY-----SRLSDA-QILAKVIEICNKENLSYTE 738
S RF L N ++KI+ PI+SR + +LS Q++ + ++IC +E +S T
Sbjct: 130 SKNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKEEQLSCVKQMIVRSMQICKQEGVSVTN 189
Query: 739 EGV-SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQD 915
V +V D R + +LQ+ A+ G I + ++ + +ML+A +D
Sbjct: 190 AAVLKELVKRNYPDNRKTIVSLQNYARN-GVIDEGILSEITANDD---ISEMLDALKSKD 245
Query: 916 IHEAYKVIAK 945
+I K
Sbjct: 246 FKTVRSLIPK 255
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 94.3 bits (224), Expect = 5e-18
Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 23/271 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP+ F ++G E V L K + + AGP GVGKTT LA+AL
Sbjct: 11 RPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCKNPSKG 70
Query: 373 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
GV F D ++E++A+++RGID VR +K K G++K+ I+
Sbjct: 71 EPCGECENCREIDRGV-FPD-LIEMDAASNRGIDDVR-ALKEAVNYKPI--KGKYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DEA +T A AL +T+E T F L +KI+ I SRC + +S++ +++
Sbjct: 126 DEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVRKEKVIE 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
+ +IC KE + E + + ++G +R A + L Q++ G G ++ + V
Sbjct: 186 YLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGRVTKEVVENFLGILS 245
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGY 963
VR L+ ++ EA K + +L + GY
Sbjct: 246 QESVRSFLKLLLNSEVDEAIKFLRELSEKGY 276
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 94.3 bits (224), Expect = 5e-18
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL----- 372
I RP D + L + + + P+++ GPPG GK T +L R L
Sbjct: 6 IDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFNAEL 65
Query: 373 --LGVSFK-----DAVLELNA-SNDRGIDVV--------RNKIKMFAQQKVT---LPPGR 495
L F+ D +E+ S+D I++ R+ I F + +
Sbjct: 66 THLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVVGGFS 125
Query: 496 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLS 675
K+V+++EA ++ AQQALRRTME Y+ + R L A++ +IIEP++SRC V+R R+
Sbjct: 126 IKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTPRIP 185
Query: 676 DAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
A I V E+ +KEN ++E ++ +V + G+LR A+N L+
Sbjct: 186 SADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLE 228
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 93.9 bits (223), Expect = 7e-18
Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 31/271 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTT-------TILC----LA 363
RP TFD +VG + VS L G + + GP G GKTT +LC A
Sbjct: 9 RPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALLCRNAEAA 68
Query: 364 RA----------------LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP-- 489
RA L+ V EL+A++ G+D VR +I V P
Sbjct: 69 RAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGVDNVREEII----NSVNFAPVR 124
Query: 490 GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSR 669
G++KI I+DE +T A AL +T+E + F L + +KI+E I SRC + R
Sbjct: 125 GKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRCQRFDFHR 184
Query: 670 LSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNV 846
+ + I ++ +C +E Y +E ++ V A+G +R AL+ L Q + G G + D+
Sbjct: 185 IGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQLSVFGNGSVHADDA 244
Query: 847 FKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
+ E ++ + A +D+ E Y +I
Sbjct: 245 RSLLGEVSDQILGEFSRAIADRDVAELYGLI 275
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 93.9 bits (223), Expect = 7e-18
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Frame = +1
Query: 322 PPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 501
P + TT L LAR L G +++ LELNAS++RGI+V+R K+K FA+ K + K
Sbjct: 555 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIGGASFK 613
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALA-ANNSEKIIEP 633
I+ LDEAD++T AQQALRRTME++SS RF L+ K+ P
Sbjct: 614 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCVTGDTKVYTP 658
Score = 93.1 bits (221), Expect = 1e-17
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Frame = +1
Query: 607 NNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRS 786
N S KIIEPIQSRCA+ R+ L+D I ++ I E L TEEG+ A+++ A+GD+R
Sbjct: 1257 NYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRR 1316
Query: 787 ALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAK-LCKIGY 963
A+N LQ+ A I+ +NVF V P +R+M+ K + +A + + + L K G
Sbjct: 1317 AINILQAAAALDRKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGL 1376
Query: 964 AAEDIVSNIFR 996
+ ED++ + R
Sbjct: 1377 SGEDVLVQMHR 1387
Score = 53.2 bits (122), Expect = 1e-05
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 348
RPQ + IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 22 RPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 91.9 bits (218), Expect = 3e-17
Identities = 80/263 (30%), Positives = 120/263 (45%), Gaps = 23/263 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFA--KTGNAPNIIIAGPPGVGKTTTILCLARAL-----LG 378
RP+TF +V N+ V + + A K A I AGP G GKTT LA++L G
Sbjct: 9 RPKTFSEVV-NQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCENRKG 67
Query: 379 V---------------SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
V +F D V+EL+A+++RGID +R + + G++K+ I+
Sbjct: 68 VEPCNSCRACREIDEGTFMD-VIELDAASNRGIDEIRRIRDAVGYRPME---GKYKVYII 123
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E S F LA N EK+ I SRC V + + D I
Sbjct: 124 DEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIEK 183
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPH 870
++ E+ E + E +S + A G LR AL L+ + G I + V +
Sbjct: 184 RLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGLIP 243
Query: 871 PMVVRQMLEAXTKQDIHEAYKVI 939
VVR + A D+ + V+
Sbjct: 244 IQVVRDYVNAIFSGDVKRVFTVL 266
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 91.5 bits (217), Expect = 4e-17
Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 30/256 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ F I+G + + L V + A + AGP G GKT+T A+A L S +
Sbjct: 11 RPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAKA-LNCSHSEV 69
Query: 397 ---------------VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEADS 528
++E++A+++ G+D +RN +K Q LP ++KI I+DE
Sbjct: 70 RSQICESCPNQNSGDIIEMDAASNTGVDEIRN-LKENVDQ---LPFESKYKIYIIDEVHM 125
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ A AL +T+E S F LA + +K+ I SR + R+S+ QI+A++ I
Sbjct: 126 LSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISEKQIVAQLENI 185
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSAL-----------NNL--QSTAQGFGHISPDNVF 849
NKEN+S+ +E + + + G LR AL NN+ +S + FG S D +
Sbjct: 186 LNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRKNFGIASNDEII 245
Query: 850 KVCDEPHPMVVRQMLE 897
+V ++ + + +L+
Sbjct: 246 QVLNDLYSKNISDVLK 261
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 91.1 bits (216), Expect = 5e-17
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ F +VG E L G + +++GP G GKTT LA+A+ ++ +D
Sbjct: 11 RPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNCLNPQDG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
++E++A+++RGID +R+ + KV P ++K+ I+
Sbjct: 71 EPCNECEACRRITSGEALDLIEIDAASNRGIDEIRD-----LRDKVNFAPVELKYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T+ A AL +T+E + F LA +K+ I SRC Y RLS +I+A
Sbjct: 126 DEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSADEIVA 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
++ E+C K+ L + E ++A+ A G +R AL+ L
Sbjct: 186 RLREVCGKQGLKASPEALAAIARHADGGMRDALSLL 221
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 90.6 bits (215), Expect = 7e-17
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 30/234 (12%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP ++ ++ ++ + F +G P+++ GPPG GKT+TI +++ + V
Sbjct: 19 RPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKDRKYQMV 78
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTL---PPGRHKIV-----------ILDEADSMTD 537
LELNAS+DRGI+VVR+ IK F++ T G + + LD S+ +
Sbjct: 79 LELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLDCNKSLCE 138
Query: 538 GAQQALRRTMELYSSTTRFAL---------------AANNSEKIIEPIQSRCAVLRYSRL 672
+ + ++ +ST + AL N KI +QSRC R+S L
Sbjct: 139 NIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPL 198
Query: 673 SDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS-TAQGFGHI 831
I ++ EI E + T EG +++ +++GD+R LN LQS + +G+I
Sbjct: 199 PIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNI 252
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 89.8 bits (213), Expect = 1e-16
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
I RP +F+ ++G V +L+ +A GN P++++ G G GK++ + +R S
Sbjct: 4 IEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSALEVFSRRFYTESA 63
Query: 388 KD--AVLELN----------ASNDRGIDVV-RNK-----IKMFAQQKVTLPP--GRHKIV 507
+ VL ++ A NDR + +NK K + +L P +++
Sbjct: 64 AENTTVLPVSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSAPFRLI 123
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I D A +T AQ ALRR ME YS T RF ++ II+PI+SRC L + + +A +
Sbjct: 124 IFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPIDEATM 183
Query: 688 LAKVIEICNKENL--SYTEEGVSAVVFTAQGDLRSAL 792
+ + +E S +EE + ++ + GDLR AL
Sbjct: 184 RDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKAL 220
>UniRef50_O29072 Cluster: Replication factor C large subunit; n=1;
Archaeoglobus fulgidus|Rep: Replication factor C large
subunit - Archaeoglobus fulgidus
Length = 479
Score = 89.8 bits (213), Expect = 1e-16
Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 390
RP+T + +V ++ ++R+ +AK+ G+ P +++AGPPGVGKT+ L LA +
Sbjct: 8 RPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALANTMGW---- 62
Query: 391 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH--------KIVILDEADSMTD--- 537
+AV ELNAS+ R V+ + A + G K++ILDE D++
Sbjct: 63 EAV-ELNASDQRSWRVIERIVGEGAFNETISDEGEFLSSRIGKLKLIILDEVDNIHKKED 121
Query: 538 -GAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE-IC 711
G + AL R ++ + L AN+ K+ +++ C ++ + RL+ Q+ A+V+E I
Sbjct: 122 VGGEAALIRLIKRKPAQP-LILIANDPYKLSPELRNLCEMINFKRLTKQQV-ARVLERIA 179
Query: 712 NKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVF 849
KE + + + + A GDLR+A+N+ Q+ A+G + P++VF
Sbjct: 180 LKEGIKVDKSVLLKIAENAGGDLRAAINDFQALAEGKEELKPEDVF 225
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 89.0 bits (211), Expect = 2e-16
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK--- 390
RP + + ++ ++L + G+ P++++ GP G GK T I+C+ R L GV +
Sbjct: 9 RPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLR 68
Query: 391 ---------------------DAVLELNASNDRGID--VVRNKIKMFAQ--QKVTLPPGR 495
+ LE+N S+ D V++ +K AQ Q T
Sbjct: 69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD 128
Query: 496 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLS 675
K+V+L E D +T AQ ALRRTME Y ST R L N++ K+I PI+SRC +R S
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 676 DAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSAL 792
I + +C KE L+ + + + +LR AL
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 88.6 bits (210), Expect = 3e-16
Identities = 58/217 (26%), Positives = 118/217 (54%), Gaps = 9/217 (4%)
Frame = +1
Query: 223 PQTFDXIVGNEXTVSRLAVFAK--TGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFK 390
P+ ++GN +++ V+A + P +++ GPPG+GKTT +A L+G +
Sbjct: 9 PKKLGDVLGNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTT----IAH-LVGKEYF 63
Query: 391 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT----DGAQQALR 558
+E+NAS+ R D++++ I AQ + G +K++I+DE D ++ G +A+
Sbjct: 64 SETIEVNASDKRSYDIIKSSIGEAAQTRSLFHSG-YKLLIMDEVDGISGRDDSGGARAVN 122
Query: 559 RTMELYSSTTRFALAANNS-EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
T++ +S L AN++ K + I+ +C ++++++ I A++ IC +E++ Y
Sbjct: 123 ETIK--NSKQPIILMANDAYSKRLTSIKPKCQGIKFTKVHTNSINAQLKRICAREDIEYD 180
Query: 736 EEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
E + + + GDLRSA+ +L++ I+ D++
Sbjct: 181 SEALYTLSKESNGDLRSAITSLEAIVDNDKKITKDSL 217
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 88.2 bits (209), Expect = 4e-16
Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 20/290 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP+TF IVG E V L T + + +GP G GKTTT LA+A+
Sbjct: 10 RPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPVEG 69
Query: 373 ---------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+G++ + V E++A+++RGID +R ++ K+ G++K+ I+DE
Sbjct: 70 EPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIR---ELRESIKLVPAQGKYKVYIIDE 126
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T+ A AL +T+E F LA K+ I SRC + R+S I +
Sbjct: 127 VHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIWEHL 186
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMV 879
I KE L Y E + + ++G LR AL+ + I+ ++ KV
Sbjct: 187 KNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVSWRK 246
Query: 880 VRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVK 1029
+ +++ A + + + IA++ + G + V I + RY+ +K
Sbjct: 247 ILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYV--RYLNLIK 294
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 88.2 bits (209), Expect = 4e-16
Identities = 71/225 (31%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG--- 378
I RP++FD ++G E L + P++I+ G G GK T +LCL L G
Sbjct: 4 IEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGSIP 62
Query: 379 -----------------VSF--KDAVLELNASNDRGID--VVRNKIKMFAQQKVTLPP-- 489
VS+ D +E++ S D V+++ IK Q K L
Sbjct: 63 EMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSMLA 122
Query: 490 -GRH---KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVL 657
R K+V++ A+ +T AQ ALRRT+E+YS R L N ++IEPI+SRC L
Sbjct: 123 RSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFL 182
Query: 658 RYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSAL 792
R SD + + + I KEN + +E + + + GD+R AL
Sbjct: 183 RIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRAL 227
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 88.2 bits (209), Expect = 4e-16
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 7/207 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNA--PN---IIIAGPPGVGKTTTILCLARALLGVS 384
RP+T +VGN V L +A+ + P +I+ GP G+GKT++ A AL G
Sbjct: 17 RPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSS----AHALAG-D 71
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRR 561
+ V+ELNAS+ R V+ KI A T G+ +++ILDEAD++ A + +R
Sbjct: 72 MEWEVIELNASDQRTAGVIE-KIAGSAASMNTFFGGK-RLIILDEADNLHGTADRGGMRA 129
Query: 562 TMELYSSTTR-FALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
+ ST + L AN+ + +++ C +++ + ++ + ++C E +S ++
Sbjct: 130 ISGIIKSTLQPIILIANDIYGLTPTVRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQ 189
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTAQG 819
E V + A GD RSA+N+LQ+ A G
Sbjct: 190 EAVLQIAENAGGDFRSAINDLQAAANG 216
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and tau;
n=2; Synechococcus|Rep: DNA polymerase III, subunits
gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 87.0 bits (206), Expect = 8e-16
Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 20/292 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F +VG V LA + G AP + GP G GKT++ LA++L
Sbjct: 15 RPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGPTP 74
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ VLE++A+++ G+D +R I+ V R+K+ ++DE
Sbjct: 75 DPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVN---SRYKVYVIDE 131
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+++ A AL +T+E F LA + ++++ I SRC + R+ ++A +
Sbjct: 132 CHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAHL 191
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMV 879
+I +E + T E + V +QG LR A L + G I+P+ V+ +
Sbjct: 192 GKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLLEGSITPEAVWDLVGGIPEQQ 251
Query: 880 VRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLA 1035
+ +++A QD+ +L + G ++ N+ VA +R + VK A
Sbjct: 252 LLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNL--VALYRDLLLVKTA 301
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 86.6 bits (205), Expect = 1e-15
Identities = 74/269 (27%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTI----LCLARALLG-- 378
RP++FD +VG + V L G+ + I++ G GVGKTT LCL + G
Sbjct: 8 RPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCL-NCVNGPT 66
Query: 379 ----------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIVIL 513
VS K++ V+E++A+++ G+D +R + + LP R+K+ I+
Sbjct: 67 PDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIR----VLLENSSYLPTSSRYKVYII 122
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E + RF +A K+ + SRC L +L+ Q+ A
Sbjct: 123 DEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFA 182
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA---QGFGHISPDNVFKVCDE 864
++EI KE++ + +G+ + A G +R+AL L+ +A + H+S C +
Sbjct: 183 HLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIYTKNKIHVSEVRALLGCVD 242
Query: 865 PHPMVVRQMLEAXTKQDIHEAYKVIAKLC 951
H + +++ D A +V +LC
Sbjct: 243 KH--LTENLVKCILLADASSALEVFRELC 269
>UniRef50_UPI00015BB275 Cluster: replication factor C large subunit;
n=1; Ignicoccus hospitalis KIN4/I|Rep: replication
factor C large subunit - Ignicoccus hospitalis KIN4/I
Length = 476
Score = 86.2 bits (204), Expect = 1e-15
Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 9/220 (4%)
Frame = +1
Query: 208 IXXXRPQTFDXIVGNEXTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTILCLARA 369
I RP+ + ++ E L + K +G P ++ GPPGVGKT+ + +
Sbjct: 7 IIKYRPKRVEDVIDQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAICN- 65
Query: 370 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-GAQ 546
F +E+NAS+ R + ++ + A K LPP + ++++LDE D ++ G +
Sbjct: 66 ----EFNLEKIEMNASDFRRKGDIE-RVAIAAATKKPLPPWKGRLILLDEVDGLSPRGDE 120
Query: 547 QALRRTMELYSSTTR-FALAANNSEKI-IEPIQSRCAVLRYSRLSDAQILAKVIEICNKE 720
A+ +EL T + AN+ + PI+ ++ + R+ + +++IC KE
Sbjct: 121 GAVAAILELIKKTKNPIVMTANDPWGTHLRPIREESLLVEFKRIPKTKAREFLLKICEKE 180
Query: 721 NLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPD 840
+ +E V ++ +GDLR+++N+LQS A+ +G ++ D
Sbjct: 181 GVYCEKEAVDYIIEKNKGDLRASINDLQSIAEAYGKVTLD 220
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 86.2 bits (204), Expect = 1e-15
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEX-TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL------- 375
RPQ F+ +VG + T + L A ++ GP GVGKTT LA+ +
Sbjct: 23 RPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKINEDGNQRD 82
Query: 376 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQ 549
G F + EL+A+++ +D +RN I +V +PP G++K+ I+DE ++ A
Sbjct: 83 GEDFAFNIFELDAASNNSVDDIRNLI-----DQVRIPPQVGKYKVYIIDEVHMLSQAAFN 137
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
A +T+E F LA KII I SRC + + R++ + + I ++ +
Sbjct: 138 AFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDFRRITVGDAASYLKYIAEQQGIE 197
Query: 730 YTEEGVSAVVFTAQGDLRSALN 795
EE + + A G +R AL+
Sbjct: 198 ADEEALHMIAQKADGAMRDALS 219
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 86.2 bits (204), Expect = 1e-15
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQTF +VG + + LA + A ++ GP GVGKTT LA+ + +D
Sbjct: 12 RPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKETQDP 71
Query: 397 -------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQ 549
+ EL+A+++ +D +RN I +V +PP G +K+ I+DE ++ A
Sbjct: 72 NEDFAFNIFELDAASNNSVDDIRNLI-----DQVRIPPQVGNYKVYIIDEVHMLSASAFN 126
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
A +T+E F LA KII I SRC + + R++ + I +E ++
Sbjct: 127 AFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRITVTDAKNYLAHIAEQEGVN 186
Query: 730 YTEEGVSAVVFTAQGDLRSALN 795
++ + + A G +R AL+
Sbjct: 187 AEDDALHIIAQKADGAMRDALS 208
>UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III,
gamma/tau subunits; n=2; Oenococcus oeni|Rep:
DNA-dependent DNA polymerase III, gamma/tau subunits -
Oenococcus oeni ATCC BAA-1163
Length = 608
Score = 85.8 bits (203), Expect = 2e-15
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 10/222 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGV----- 381
RP+TF +VG L K+ + + AGP G GKT+ AR + G+
Sbjct: 24 RPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREIEGIPDDTD 83
Query: 382 --SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 555
SF D ++E++A+++ G+D +RN + + KI I+DE ++ GA AL
Sbjct: 84 RESFSD-IIEIDAASNNGVDEIRNLRDAANYAPIEY---QFKIYIIDEVHMLSTGAFNAL 139
Query: 556 RRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
+T+E + +F LA +KI I SR + R+ QI+ ++ + + + ++Y
Sbjct: 140 LKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQIVKRLEFVLDDQKIAYD 199
Query: 736 EEGVSAVVFTAQGDLRSALNNL-QSTA-QGFGHISPDNVFKV 855
+ V + G LR AL+ L Q+ A G + D+VFK+
Sbjct: 200 PAALKIVANASDGGLRDALSILDQAVAITKTGRVELDDVFKI 241
>UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5;
Sulfolobaceae|Rep: Replication factor C large subunit -
Sulfolobus tokodaii
Length = 440
Score = 85.4 bits (202), Expect = 3e-15
Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTG--NAPN---IIIAGPPGVGKTTTILCLARALLGVS 384
RP+T + + E L + ++ PN +++ GPPGVGKTT LAR
Sbjct: 10 RPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALAR-----D 64
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ-ALRR 561
+K + E+NAS+ R ++ +R + A T+ + K+++LDE D + A A+
Sbjct: 65 YKLELFEMNASDSRNLNDIRTMAER-ASITGTIFGIKGKLILLDEVDGLNARADAGAIDA 123
Query: 562 TMELYSSTTR-FALAANNS-EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYT 735
+EL + T L AN+ + + P+++ ++ RL+ + + +IC E ++
Sbjct: 124 ILELINKTKYPIILTANDPWDPSLRPLRNAVKMIELKRLTKYPLKRILKKICEAEKITCE 183
Query: 736 EEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPD 840
+E + ++ ++GD R A+N LQ A+G+G ++ D
Sbjct: 184 DEALDFIIEQSEGDARYAINMLQGVAEGYGRVTLD 218
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 84.6 bits (200), Expect = 4e-15
Identities = 53/206 (25%), Positives = 109/206 (52%), Gaps = 10/206 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNA--PN---IIIAGPPGVGKTTTILCLARALLGVS 384
RPQT ++GN+ +++ + P+ +++AG PGVGKTT + + L
Sbjct: 251 RPQTKSDLIGNKNQIAKFYTWINKWEKVIPDRRAVLLAGAPGVGKTTVSKIVGKTL---G 307
Query: 385 FKDAVLELNASNDRGIDVVRNKIK-MFAQQKVTLPPGRHK--IVILDEADSMTDGAQQAL 555
F +E NAS+ R + IK +F ++++ ++K ++I+DE D M+ G + +
Sbjct: 308 FNP--IEFNASDTRNKSSIELAIKRIFLNGQISIDGSKNKKPLIIMDEVDGMSSGDRGGI 365
Query: 556 RRTMELYSSTTRFALAANNS--EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
++ T + + N +K ++P+ + C + +S++S +++ ++ IC+KE +
Sbjct: 366 TELVKYIKETEQPIVCICNDIMDKKMQPLINVCETINFSKISVSELTERLKYICDKEGVH 425
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQS 807
++E ++ + A GD+R +N LQS
Sbjct: 426 VSDENLNQIASKAHGDVRYGINMLQS 451
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 84.6 bits (200), Expect = 4e-15
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 21/216 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTT-------ILCLAR--- 366
RP+ D IVG + V L A A+ A I+++GP G GKTTT +LCL R
Sbjct: 11 RPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRTSA 70
Query: 367 ----------ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
++L S D +LE++A+++ G++ VR I+ A K L ++K I+D
Sbjct: 71 LPCLKCDSCISILSGSHPD-ILEIDAASNTGVEDVRMLIEG-ALYKPLL--SKYKSYIVD 126
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E ++ A AL + +E +F LA +KI I SRC R SRLS I +
Sbjct: 127 EVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAER 186
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
+ ++ KE + T++ + + A G LR AL+ L+
Sbjct: 187 LTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 83.8 bits (198), Expect = 8e-15
Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGV----- 381
RPQTF IVG V L +T + + AGP GVGKT+T L++AL V
Sbjct: 11 RPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNCVNGPTD 70
Query: 382 ----------SFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVIL 513
S + VLE++ +++RGID +RN +Q V P R ++I I+
Sbjct: 71 TPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRN-----IRQNVGFAPSRARYRIYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E S +F A + ++ E +QSRC + +S I
Sbjct: 126 DEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISVNDIEK 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLR---SALNNLQSTAQGFGHISPDNVFKVCDE 864
++EIC E + + A+G LR S L+ L S +++ +V V
Sbjct: 186 HLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFCD--DNVTSADVNYVLGY 243
Query: 865 PHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ M E +D A +++ + G + + +
Sbjct: 244 IDDDKIYSMFECFVNKDTSGALRIVDDILNEGKTPAEFIDQL 285
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; n=4;
Halobacteriaceae|Rep: Replication factor C small subunit
II - uncultured haloarchaeon
Length = 375
Score = 83.8 bits (198), Expect = 8e-15
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 5/193 (2%)
Frame = +1
Query: 442 RNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNS 615
R+ I Q+ + P G +K V+LD A+++ + QQALRR ME Y T+F +A
Sbjct: 118 RDMISHVMQELASYQPASGTYKTVLLDNAETIREDFQQALRRVMERYHKNTQFIIATRQP 177
Query: 616 EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+I PI+SRC + + +I + V +I E + E V+ + A GDLR A+
Sbjct: 178 TTLIPPIRSRCFPVPIRAPTADEIESVVTDIAAVEGVETDEMAVTLIASKADGDLRYAIL 237
Query: 796 NLQSTA-QGFGHISPDNVFK-VCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKLC-KIGYA 966
Q A +G G I+ D + + D + +++L+ QDI +A I L G+
Sbjct: 238 AAQHAAIEGDGAITTDAAQEAIADVGYEDTFQEILDTAAAQDISDARDQITTLLDDEGFN 297
Query: 967 AEDIVSNIFRVAN 1005
++++ + VAN
Sbjct: 298 GQELLRELLSVAN 310
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 83.8 bits (198), Expect = 8e-15
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 4/213 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAK--TGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKD 393
RP+ + +VGN + +++ +A T +P +I+ G PG+GKT++ LA +
Sbjct: 8 RPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALAHDM-----NW 62
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEL 573
V+ELNAS+ R V+ K+ + +L K++ILDEAD++ A + R +
Sbjct: 63 EVVELNASDQRTKAVIE-KVAGGSASTGSLTGAARKLIILDEADNLQGNADRGGARAIAE 121
Query: 574 YSSTTR--FALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
R L AN+ + I++ C +++ L ++ ++ EIC++E L+ + + +
Sbjct: 122 VIRQARQPLILIANDLYGLDGTIRNLCTKVQFKALPAKSLVPRLREICSREQLTCSAQAL 181
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+ + + GD+RSA+ L ++A G + D+V
Sbjct: 182 TDIAEQSGGDIRSAVTMLYASAIGKDTVGEDDV 214
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 83.4 bits (197), Expect = 1e-14
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 25/236 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RP TFD +VG + L K+ A + GP GVGKTT LA+ +
Sbjct: 12 RPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCLTPTED 71
Query: 373 ---LG-----VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 510
G VSF++ V EL+A++ +D +RN + +V PP G+ K+ I
Sbjct: 72 FEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLV-----DQVRYPPQSGKRKVYI 126
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE +++ A A +T+E F LA KII I SRC + + R+ +
Sbjct: 127 IDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRIEVKDMS 186
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN--NLQSTAQGFGHISPDNVFK 852
+ I KE + ++ + + A G LR AL+ +L +T HI+ +V K
Sbjct: 187 GHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSADRHITYQSVVK 242
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 83.0 bits (196), Expect = 1e-14
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F + G + V L+ KTG A + GP GVGKTTT +A+AL
Sbjct: 11 RPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNCEKGPTA 70
Query: 373 --LG-----VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
G V + V+E++A+++ G+D VR+ ++ + R+K+ ++DE
Sbjct: 71 EPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPAR---DRYKVFVVDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ GA AL +T+E +F LA + K+ E I SRC + RL+ QI ++
Sbjct: 128 VHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLTLQQIADQL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPD 840
++ E + ++ V A+G +R AL+ L G +PD
Sbjct: 188 AKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGD-APD 233
>UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22;
Alphaproteobacteria|Rep: DNA polymerase III tau subunit -
Bradyrhizobium japonicum
Length = 613
Score = 82.6 bits (195), Expect = 2e-14
Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 27/290 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP +FD ++G E V ++ +TG P I+ G GVGKTTT LARAL
Sbjct: 29 RPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNYEMPDGS 88
Query: 373 ----------LGVSFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 501
LGV + VLE++A++ G+D VR ++ + R+K
Sbjct: 89 VKGPTIHMPNLGVHCQAIMESRHMDVLEMDAASHTGVDDVR---QINDSVRYAPASARYK 145
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDA 681
+ I+DE ++ A A +T+E +F A K+ + SRC R+
Sbjct: 146 VYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDLRRVEAD 205
Query: 682 QILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVC 858
++ + I KE++ E + + A+G +R +L+ L Q+ A G + D V ++
Sbjct: 206 VLMKHLASIAAKESVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGTVKADAVRQML 265
Query: 859 DEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANF 1008
V + ++ + DI A+K +G ++S++ NF
Sbjct: 266 GLADRTRVIDLFDSLARGDIAAAFKEFRDQYDVGADPIVVLSDLAEFVNF 315
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 82.6 bits (195), Expect = 2e-14
Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+TF +VG E L +TG + + GP G GKT+T LARA+ ++ ++
Sbjct: 12 RPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILARAINCLAPREG 71
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
VLE++A+++RGID +RN I +K+ L P GR+K+ I+
Sbjct: 72 EPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLI-----EKIPLGPVEGRYKVYII 126
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E + F LA K++ I SRC + L+ I
Sbjct: 127 DEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLTVQAIAG 186
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQG 819
++ E+ + +S + A G LR AL+ L Q A G
Sbjct: 187 RLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASG 229
>UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Desulfovibrio|Rep: DNA polymerase III,
subunits gamma and tau - Desulfovibrio vulgaris subsp.
vulgaris (strain DP4)
Length = 622
Score = 82.2 bits (194), Expect = 2e-14
Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 21/268 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQTF + G E + L+ A+ AP + +G GVGKTT A+AL +
Sbjct: 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCATAPTG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
V+E++ +++RGID + + + GR+K+ I+DE
Sbjct: 71 EPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPME---GRYKVFIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
A +T A AL +T+E + F LA K I SRC ++RLS+A + A +
Sbjct: 128 AHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
++ +E + Y V + A G +R +++ L Q A G ++ D V
Sbjct: 188 TKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQE 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ +++EA QD V+ +L G
Sbjct: 248 LFLRLMEALAAQDCLGVANVVRELLDRG 275
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 82.2 bits (194), Expect = 2e-14
Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 4/213 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKD 393
RP I+GN V ++ +AKT + ++ G PG+GKT+ L LAR +
Sbjct: 8 RPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALARDM-----DW 62
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME- 570
VLELNAS+ R ++ + GR K++I+DE D++ A + R +
Sbjct: 63 EVLELNASDARTKTIIERVAGNSSTTTSLFGAGR-KLIIIDEVDNLEGNADRGGARAIAD 121
Query: 571 -LYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
L + L AN++ + + I+ C + + + + + ++ EIC E+++ E+ +
Sbjct: 122 ILKEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACGEDAL 181
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
SA+ ++ GD+R+A+N L ++ G IS ++
Sbjct: 182 SAIAESSAGDMRTAVNMLFGSSTGKTSISVGDI 214
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 81.8 bits (193), Expect = 3e-14
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 22/270 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL-------- 372
RPQ+F +VG L+ K G P+ ++ GP G GKT++ LA+AL
Sbjct: 27 RPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRCPNAQNF 86
Query: 373 ------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
G S D V+E++ +++ G+D +R A + G++KI I+D
Sbjct: 87 VPCNDCYSCNEIAGGSSID-VIEIDGASNNGVDAIRELRDTVAFMPSS---GKYKIYIID 142
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E ++ A AL +T+E + F +A KI + I SRC + R+S I +
Sbjct: 143 EVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRSITER 202
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHP 873
+ IC++E ++ +E + V G +R + + L Q G ++ +V ++
Sbjct: 203 LKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEILGLTDR 262
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIGY 963
++ + L A ++ KVI K+ G+
Sbjct: 263 ALLFETLNALIDRNSQAVLKVIEKIAAAGF 292
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 81.8 bits (193), Expect = 3e-14
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTG--NAPN---IIIAGPPGVGKTTTILCLARALLGVS 384
RP +VGNE + + + P+ ++ GPPG GKT+ + A+
Sbjct: 16 RPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATAK-----E 70
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD----GAQQA 552
F ++ELNAS+ R + ++ ++ + L KI++LDE D ++ G QA
Sbjct: 71 FSWELIELNASDVRTREALQQRLLGALNTRSVLGYSG-KIILLDEVDGISTKEDAGGLQA 129
Query: 553 LRRTMELYSSTTRFALAANNS-EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
+ +E S L AN+ + + P++ C ++ + ++ I+ + IC+KE +
Sbjct: 130 IVELIE--KSNWPIVLTANDPWDPKLRPLRDLCELIEFKKIGKRDIMKVLENICSKEGVE 187
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 834
+ E +SA+ A+GDLR+A+N+LQS A G IS
Sbjct: 188 CSREVLSAIADNAKGDLRAAINDLQSLAMGKKTIS 222
>UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2;
Desulfurococcales|Rep: Replication factor C large
subunit - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 484
Score = 81.8 bits (193), Expect = 3e-14
Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Frame = +1
Query: 319 GPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH 498
GP GVGKT+ + A G+ ++E+NAS+ R + K+ A Q +L +
Sbjct: 51 GPAGVGKTSLVEAAANEY-GLE----LIEMNASDFRRKSDIERIAKIAATQ-FSLFGRKR 104
Query: 499 KIVILDEADSMTDGAQQA-LRRTMELYSSTTR-FALAANNS-EKIIEPIQSRCAVLRYSR 669
KI++LDE D ++ A + L +EL + T + AN+ ++ ++P++ ++ + R
Sbjct: 105 KIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLRDASLMVPFYR 164
Query: 670 LSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
LS+ ++ + IC EN+ +E + + A+GDLRSA+N+LQ+ A+G+G + D V
Sbjct: 165 LSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQAIAEGYGVVRVDLV 223
>UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 596
Score = 81.4 bits (192), Expect = 4e-14
Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 22/283 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP++FD +VG L TG + + G G GKTT LARA+
Sbjct: 10 RPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAVNCEHPVDG 69
Query: 373 ---------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIVIL 513
LG+ S D VLEL+A+++ G+D VR + V P R ++ I+
Sbjct: 70 NPCNQCPSCLGIENGSILD-VLELDAASNNGVDQVR----ALRDEAVYTPAAVRKRVYIV 124
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL + +E F LA K+ I+SRC + R+ I
Sbjct: 125 DEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILPGDIAR 184
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHP 873
++ + +E + T EG + + A G LR AL+ L G I V
Sbjct: 185 RLSYVAEQEGIGLTSEGAALLARLADGGLRDALSLLDQCVNPSGTIGEAEVLSALGLAGN 244
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVA 1002
+ ++E K++ A + +A+L G +++ + +A
Sbjct: 245 LETAALMEQIAKRETAGALETLARLYGAGKDVGSLLNELSSLA 287
>UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: DNA polymerase III, subunits gamma and tau -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 535
Score = 81.4 bits (192), Expect = 4e-14
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 19/262 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F+ +V E L K + I GP G GKTTT +ARA+ ++ KD
Sbjct: 10 RPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAVNCLNPKDG 69
Query: 397 ----VLELNAS--NDRGIDVVR---------NKIKMFAQQKVTLPPG--RHKIVILDEAD 525
E+ S N++ +DV+ N ++ + +V PP + ++ I+DE
Sbjct: 70 NPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQI-RDEVRYPPSMCKRRVYIIDEVH 128
Query: 526 SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 705
++ GA AL +T+E + F LA + +K+ I SRC + R+S I ++ +
Sbjct: 129 MLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFDFKRISVKDIYERLKK 188
Query: 706 ICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPHPMVV 882
+ E +S ++ + + A+G LR AL L+ HIS V + +V
Sbjct: 189 VVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDEHISYKFVANLLGVTSTEIV 248
Query: 883 RQMLEAXTKQDIHEAYKVIAKL 948
++ L A + D ++ +V+ +L
Sbjct: 249 KEYLNAIVENDSNKGLRVVNRL 270
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 81.4 bits (192), Expect = 4e-14
Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 21/223 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RP+ FD I+G V K + I +GP G GKTTT LA+ L
Sbjct: 10 RPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCKDPQGY 69
Query: 373 ---------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ + SF D V+E++A+++RGID +RN I+ + + G++K+ I+D
Sbjct: 70 NPCNKCENCVSINNNSFLD-VIEMDAASNRGIDEIRN-IRDSSNYRPVY--GKYKVYIID 125
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A AL +T+E S F LA N EK+ + I SR ++ + L +I+
Sbjct: 126 EFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNEIVEG 185
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG 825
+ I + E + Y + + + A+G +R A++ L+ + FG
Sbjct: 186 LKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQ-VEKFG 227
>UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1;
Encephalitozoon cuniculi|Rep: DNA REPLICATION FACTOR C
SUBUNIT - Encephalitozoon cuniculi
Length = 568
Score = 81.0 bits (191), Expect = 5e-14
Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 5/203 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP D IVGN+ V +L + + ++++G PG+GKTTT + ++L G++
Sbjct: 118 RPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGIGKTTTAHVVCKSL-GLN---- 172
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTME 570
V+E NAS+ R + NK+K F + L PG + K++I+DE D M+ + + +
Sbjct: 173 VIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKSKVLIMDEVDGMSSD-RGGIPELIS 231
Query: 571 LYSSTTR--FALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 744
+ T + + + I + S C LR+ + QIL++V +I + E +
Sbjct: 232 IVKETVVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQILSRVKQILDMEGKKIPDGL 291
Query: 745 VSAVVFTAQGDLRSALNNLQSTA 813
++ ++ GD+R ++ +QS A
Sbjct: 292 LNEIISRGAGDIRYTISMVQSIA 314
>UniRef50_O64301 Cluster: DNA polymerase accessory protein 44; n=8;
Viruses|Rep: DNA polymerase accessory protein 44 -
Bacteriophage RB69
Length = 320
Score = 81.0 bits (191), Expect = 5e-14
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 11/211 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGP-PGVGKTTTILCLARALLGVSFKDA 396
RP + D + G P+II+ P PG GKTT +A+AL
Sbjct: 16 RPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTT----VAKALCN-DINAE 70
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD-SMTDGAQQALRRTMEL 573
++ +N S D ID VR + FA+ V++ G+ K++++DE D S +Q+ LR ME
Sbjct: 71 MMFVNGS-DCKIDFVRGPLTAFARS-VSME-GKPKVIVIDEFDRSGLAESQRHLRTFMEE 127
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSD-------AQILAKVIEICNKENLSY 732
+SS + ANN + IIEP++SRC V+ + R ++ +++ +++EIC EN+
Sbjct: 128 FSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDKISMMKKMIHRMVEICKNENIEI 187
Query: 733 TE-EGVSAVVFTAQGDLRSALNNL-QSTAQG 819
+ + V+A+V D R + L Q +++G
Sbjct: 188 ADMKVVAALVKKNFPDFRRTIGQLDQYSSKG 218
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 80.6 bits (190), Expect = 7e-14
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F +VG V+ L K G A + G G GKTTT +A+AL
Sbjct: 11 RPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCIHGPTP 70
Query: 373 ---------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
L ++ A V+E++A+++ G+D +R I+ V R K+ ILDE
Sbjct: 71 DPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQ---SRQKVYILDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A L +T+E + F LA + +K++ + SRC + R+ ++ +
Sbjct: 128 VHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDMVKHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKV 855
EI KE++ E V V AQG LR A + L A G I + ++++
Sbjct: 188 EEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLEGTIGAERIWQL 239
>UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Campylobacter|Rep: DNA polymerase III gamma and tau
subunits - Campylobacter coli RM2228
Length = 518
Score = 80.6 bits (190), Expect = 7e-14
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILCLARALL---GVS 384
RP+TFD ++G + TVS +A N A + +G G GKT++ +RAL+ G S
Sbjct: 10 RPKTFDELIGQK-TVSTSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCDNGPS 68
Query: 385 FKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
++E++A+++RG++ ++ I+ Q K T R KI I+D
Sbjct: 69 DTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALIE---QTKYTPSMARFKIFIID 125
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A AL +T+E S +F LA + K+ + SR R+ ++ +IL
Sbjct: 126 EVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQNEILNH 185
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
+ EI NKEN+ + EE + V + G LR L L
Sbjct: 186 LKEILNKENVKFEEEALKFVARSGNGSLRDTLTLL 220
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and tau;
n=2; Clostridiaceae|Rep: DNA polymerase III, subunits
gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 80.6 bits (190), Expect = 7e-14
Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 23/294 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F+ ++G + ++ L + N A + G G GKT+T ARA+ +S +DA
Sbjct: 11 RPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNCLSAEDA 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
V+E++A+++ G+D VR ++ V PP G++KI I+
Sbjct: 71 NPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVRE-----IRENVKYPPSKGKYKIYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA AL +T+E S F LA KI I SRC + + I+
Sbjct: 126 DEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRINDIMK 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ IC + EE + + + G LR AL+ L Q + ++ NV + +
Sbjct: 186 RLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNILGMVN 245
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKL 1032
+ +++ +D +I + G A ++ +I +++FR I K+
Sbjct: 246 YEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDI--ISHFRSILLAKM 297
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 80.2 bits (189), Expect = 1e-13
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+ D + E V+ L + + PN++ GPPG GKT+TIL AR L G F+
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQR 176
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKV 477
VLELNAS++RGI VVR K+K FAQ V
Sbjct: 177 VLELNASDERGIQVVREKVKTFAQLTV 203
>UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n=7;
Lactobacillus|Rep: DNA polymerase III subunit gamma/tau
- Lactobacillus johnsonii
Length = 602
Score = 80.2 bits (189), Expect = 1e-13
Identities = 64/280 (22%), Positives = 125/280 (44%), Gaps = 23/280 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+TFD +VG L K G + + AGP G GKT+ A+AL + +D
Sbjct: 11 RPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTNLQDG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
++E++A+++ G+D +R+ + KV P G++K+ I+
Sbjct: 71 EPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRD-----IRDKVKYAPTQGKYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA AL +T+E F LA +K+ I SR + R+ ++A
Sbjct: 126 DEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLIA 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ I +E + + E+ + + A G +R +L+ L Q + + ++ ++
Sbjct: 186 RMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYAA 245
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ Q+L A +++ L + G + ++I+ +
Sbjct: 246 QEKIEQVLLNLLNGKTSAALEIVHALLQDGASTKNILDEL 285
>UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2;
cellular organisms|Rep: DNA polymerase III subunit gamma
- Propionibacterium acnes
Length = 957
Score = 80.2 bits (189), Expect = 1e-13
Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 27/286 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL------- 372
RP+TFD ++G + + L A N N + +GP G GKTTT LARAL
Sbjct: 115 RPETFDEVIGEDHVIEPLKR-AILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQGPT 173
Query: 373 ---LGV--SFKDA---------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 504
G S +D V+E++A++ G+D R+ +++ P R+KI
Sbjct: 174 PTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARD-----LRERAFFAPVHSRYKI 228
Query: 505 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQ 684
I+DEA +T AL + +E +F A EK+I I+SR + +
Sbjct: 229 YIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPKV 288
Query: 685 ILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGF--GHISPDNVFKVC 858
++ + E+C KE + + VV G +R +L+ L G GH+S + +
Sbjct: 289 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGHVSYEQAAALL 348
Query: 859 DEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFR 996
++ ++++A D H+ + I K+ ++G ++ R
Sbjct: 349 GYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLR 394
>UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep: Replication
factor C large subunit - Uncultured methanogenic
archaeon RC-I
Length = 553
Score = 80.2 bits (189), Expect = 1e-13
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT-GNAPN-IIIAGPPGVGKTTTILCLARALLGVSFKD 393
RP + IVGN+ V L +A+T G +I+ G PGVGKT+ L LA + G +
Sbjct: 15 RPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDM-GWDY-- 71
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTD----GAQQALR 558
+ELNAS+ R D + N+I A T G ++VILDEAD++ G + A+
Sbjct: 72 --IELNASDVRTKDAI-NRIAGPAAMAGTFEGTGGRRLVILDEADNLHGNYDRGGEAAII 128
Query: 559 RTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
+ +++ L AN+ + +P++ +++ + + + ++C E L
Sbjct: 129 NVIR--NASQPVILIANDMYAMSKPLRESALQIQFRAILSTSVAKVLRKVCANEGLKCDP 186
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
E + + DLRSA+N+LQ+ AQG G ++ +V
Sbjct: 187 EALMKIA-ERTNDLRSAINDLQAAAQGSGQVTVADV 221
>UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit;
n=3; Deinococcus|Rep: DNA polymerase III, tau/gamma
subunit - Deinococcus radiodurans
Length = 615
Score = 79.8 bits (188), Expect = 1e-13
Identities = 77/278 (27%), Positives = 122/278 (43%), Gaps = 21/278 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTT--ILCLARALLGVSFK 390
RP ++ +VG E L + G + + +GP GVGKTTT ++ + G + K
Sbjct: 9 RPIRWEDVVGQEHVKDVLRTALEQGRIGHAYLFSGPRGVGKTTTARLIAMTANCTGPAPK 68
Query: 391 DA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILD 516
V+E++A+++ +D VR+ ++KV L G KI ILD
Sbjct: 69 PCGECESCLAVRAGSHPDVMEIDAASNNSVDDVRD-----LREKVGLAAMRGGKKIYILD 123
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
EA M+ A AL +T+E F LA EKII I SRC R+ RL+ +I K
Sbjct: 124 EAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRFRRLTSEEIAGK 183
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPM 876
+ + E S + ++ + A G +R + L+ ++ V + P
Sbjct: 184 LAGLVTLEGASADPDALNLIGRLADGAMRDGESLLERMLAAGTAVTRPAVEEALGLPPGE 243
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
VR + A D EA A+L + G+AA +V +
Sbjct: 244 RVRGVASALLVGDAGEAISGAAQLYRDGFAARTVVEGL 281
>UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8;
Chlamydiaceae|Rep: DNA Pol III Gamma and Tau - Chlamydia
trachomatis
Length = 466
Score = 79.8 bits (188), Expect = 1e-13
Identities = 77/284 (27%), Positives = 122/284 (42%), Gaps = 27/284 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP F I+G + VS L + A + I +G G GKTT A+AL
Sbjct: 12 RPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNPTQD 71
Query: 373 --------------LGVSFKDAVLELNASNDRGIDVVR--NKIKMFAQQKVTLPPGRHKI 504
LG S V+E++ ++ RGI+ +R N+ +F K R+KI
Sbjct: 72 QEPCNQCAICKEISLGTSMD--VIEIDGASHRGIEDIRQINETVLFVPSK-----SRYKI 124
Query: 505 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQ 684
I+DE +T A +L +T+E +F LA KI I SRC + R+S+
Sbjct: 125 YIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEET 184
Query: 685 ILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGF--GHISPDNVFKVC 858
I+ K+ I +E + E + + AQG LR A +L G + PD+ K
Sbjct: 185 IIDKLATIAKQEGTETSREALLPIAKAAQGSLRDA-ESLYDYVVGLFPESLDPDSTAKAL 243
Query: 859 DEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ Q+ EA T Q+ +A ++ ++G A + ++
Sbjct: 244 GILSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDV 287
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 79.4 bits (187), Expect = 2e-13
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 22/237 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEX-TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP D +VG E +++ AP + GP G GKT++ A++L +S +
Sbjct: 13 RPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSCEQP 72
Query: 397 ---------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
++E++A+++ G+D +R I + T R K+ ++
Sbjct: 73 TANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIID---GARFTPTQARWKVYVI 129
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA N E++I IQSRC + R+S I
Sbjct: 130 DECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISSNTIFH 189
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDE 864
+ EI NKE++ + ++ + + + G +R A + L + ++ NV + E
Sbjct: 190 NLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQNLLGE 246
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 79.0 bits (186), Expect = 2e-13
Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RP+ F +VG E + L +T AP + GP G GKT++ LA++L
Sbjct: 11 RPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP 70
Query: 373 ----LGV---------SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
GV + V+E++A+++ G+D +R I+ V R+K+ ++
Sbjct: 71 TAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQC---RYKVYVI 127
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA + ++++ I SRC + R+ ++
Sbjct: 128 DECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAMVK 187
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVF 849
+ I +KEN++ + E V+ V +QG LR A + L A ++P+ V+
Sbjct: 188 HLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVW 239
>UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau
subunits; n=2; Gammaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Methylococcus capsulatus
Length = 547
Score = 79.0 bits (186), Expect = 2e-13
Identities = 73/278 (26%), Positives = 118/278 (42%), Gaps = 18/278 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP F +VG E V L + G + + G GVGKTT LA+AL + A
Sbjct: 11 RPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLARILAKALNCEDRQGA 70
Query: 397 ------VLELNASNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
++ R ID++ R K++ V P GR+K+ ++DE
Sbjct: 71 NPCGRCLICREVDEGRFIDLIEVDAASRTKVEDTRDLLDNVQYAPNQGRYKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + +KI + SRC RL+ QI A++ +I
Sbjct: 131 LSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRCLQFNLKRLTPEQIRAQMAQI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVR 885
E++ + A+ AQG +R L+ L Q+ A G ++ V + V
Sbjct: 191 LASESIDFEPAATKALARAAQGSMRDGLSLLDQAIAHCGGRLTNTGVSAMLGTVSREPVY 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
LEA + E V A L + +D+V + +
Sbjct: 251 GALEALAESRADELLAVSATLAEFSPDYQDVVQQLLAI 288
>UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Caminibacter mediatlanticus TB-2|Rep: DNA
polymerase III subunits gamma and tau - Caminibacter
mediatlanticus TB-2
Length = 487
Score = 79.0 bits (186), Expect = 2e-13
Identities = 68/278 (24%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALL---GVSF 387
RP+ F+ I+G + + L + N + +G G GKTTT ++AL G+S
Sbjct: 8 RPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQCEKGISS 67
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
++E++A+++R I+ +R I+ + K ++ R KI I+DE
Sbjct: 68 SPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIE-HTKYKPSI--SRFKIFIIDE 124
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T+ A AL +T+E +F +A + K+ I SR R++++ + +I + +
Sbjct: 125 VHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIESFL 184
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
++ KEN+ + +E + +V +A+G +R +L L Q+ A +I+ D V ++ +P
Sbjct: 185 QKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLLDQAIAYSNYNITLDKVVEMLGVINPE 244
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
++ ++ + D E ++I ++ Y E I+ I
Sbjct: 245 IISKIFKLIFDGDKKEIIEIIKQI--KDYDIESIIDEI 280
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 79.0 bits (186), Expect = 2e-13
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Frame = +1
Query: 499 KIVILDEADSMTDGAQQALRRT----------MELYSSTTRFALAANNSEKIIEPIQSRC 648
K+V+LDEAD+MT AQ ALRR +E ++ +TRFAL N+ KII +QSRC
Sbjct: 218 KMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQSRC 277
Query: 649 AVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 807
R++ L + ++ I E L + G++A+V + GD+R ALN LQS
Sbjct: 278 TRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQS 330
Score = 78.2 bits (184), Expect = 4e-13
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RPQ+ + + V + P++++ GPPG GK L + +G
Sbjct: 45 RPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKHRQYWPLQGSCMG------- 97
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH--KIVILDEADSMTDGAQQALRRT--- 564
N+RGIDVVR +I+ FA + + K+V+LDEAD+MT AQ ALRR
Sbjct: 98 -----HNERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRATSS 152
Query: 565 -------MELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRL 672
+E ++ +TRFAL N+ KII +QSRC R++ L
Sbjct: 153 NLPHLTVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPL 195
>UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4;
Pyrobaculum|Rep: Replication factor C large subunit -
Pyrobaculum aerophilum
Length = 422
Score = 79.0 bits (186), Expect = 2e-13
Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Frame = +1
Query: 286 KTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFA 465
+ A I++AGPPGVGKTT + LAR + + ++ELNAS+ R D +R I
Sbjct: 52 EVAEAKAILLAGPPGVGKTTLVHALAREI-----RYELIELNASDVRTADRLRQVIGRGL 106
Query: 466 QQKVTLPPGRHKIVILDEADSM-TDGAQQALRRTMELYSSTT-RFALAANNS-EKIIEPI 636
++ +L K+V+ DE D + + L +E+ + + ANN + P+
Sbjct: 107 RES-SLFGFEGKMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRPL 165
Query: 637 QSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ 816
+ V+ RLS+ +++ + IC E EE + ++ ++ GDLR+A+N+LQ
Sbjct: 166 RDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQMYLS 225
Query: 817 GFGHISPDNVFKVCDEPHPMV 879
G I + K E +P +
Sbjct: 226 GGRRILTLDDIKRVGERNPQL 246
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 79.0 bits (186), Expect = 2e-13
Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 6/215 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT--GNAPNIIIAGPPGVGKTTTILCLARALLGVSFKD 393
RP T + GN+ L +A+T + +I+ G PG+GKT+ LA +
Sbjct: 8 RPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALAN-----DMEW 62
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRR-- 561
+ELNAS+ R DV+ N++ A + TL G ++VI+DEAD++ A + R
Sbjct: 63 PTIELNASDSRTKDVI-NRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNADRGGARAI 121
Query: 562 TMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEE 741
T + ++ L AN ++ +++ C + + +S I+ + ++C +E + Y +
Sbjct: 122 TALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESD 181
Query: 742 GVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+ + G LR A+ +LQ+ A+ ++ D+V
Sbjct: 182 ALQELAEQNSGGLRGAVKDLQAIAETTERLTADDV 216
>UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma
subunits; n=1; Pedobacter sp. BAL39|Rep: DNA polymerase
III, tau and gamma subunits - Pedobacter sp. BAL39
Length = 624
Score = 78.6 bits (185), Expect = 3e-13
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RP TF+ +VG + L + A + GP GVGKTT LA+ +
Sbjct: 12 RPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILAKTINCTNLTAE 71
Query: 373 ---LG-----VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 510
G +SF+ EL+A+++ +D +R+ I +V +PP G++KI I
Sbjct: 72 QEACGTCESCISFQTGHSFNFHELDAASNNSVDDIRSLI-----DQVRIPPQAGKYKIYI 126
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ A A +T+E S F LA KI+ I SRC + ++R+ I
Sbjct: 127 IDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVDDIS 186
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+ + I +EN+S +G+ + A G LR AL+
Sbjct: 187 SHLNRIAIRENISVEADGLHIIAQKADGGLRDALS 221
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 78.6 bits (185), Expect = 3e-13
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 23/270 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+TF I+G E L + G + I G G GKTT LA+AL + A
Sbjct: 11 RPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNCTGREGA 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
V+E++A+++RGID +R+ ++K+ P GR+++ I+
Sbjct: 71 EPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRD-----LREKIRFAPAAGRYRVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E LA ++ I SRC + R+ A I+
Sbjct: 126 DEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPADIIK 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ E+ L EE + + A+G LR AL+ L Q+ A G ++ V ++
Sbjct: 186 RLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILGTVR 245
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ +M + A +++++L G
Sbjct: 246 TDALDRMAGCLAAGEAGRALRLVSELAGEG 275
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 78.2 bits (184), Expect = 4e-13
Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 22/212 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RP+ FD +VG + V+ L AP + GP G GKT++ LAR+L
Sbjct: 13 RPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARSLNCQQSEKP 72
Query: 373 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
+G ++E++A+++ G+D +R I+ + + R K+ ++
Sbjct: 73 TIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIE---RSQFAPVQARWKVYVI 129
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E S T F LA + +++++ I SRC + R+ + +
Sbjct: 130 DECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRIPITSLTS 189
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSA 789
+ I +KE + +E ++ + ++G LR A
Sbjct: 190 HLTTIASKEKIEIDQESINLIAQRSEGGLRDA 221
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 78.2 bits (184), Expect = 4e-13
Identities = 71/279 (25%), Positives = 121/279 (43%), Gaps = 22/279 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL--LGVSFK 390
RPQTF +VG E + L+ A AP + GP G GKT++ LA++L L V
Sbjct: 18 RPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVEVP 77
Query: 391 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
A V+E++A+++ G+D +R I+ V R+K+ ++
Sbjct: 78 TAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERSQFAPVQC---RYKVYVI 134
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA + ++++ I SRC Y R+ ++
Sbjct: 135 DECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFDYRRIPLEAMVN 194
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHP 873
+ I KEN+ E + V A G LR A + L + G I+ + V+ +
Sbjct: 195 HLTIIAQKENIEIETEALILVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAVPE 254
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ +L+A + + KL G ++ N+
Sbjct: 255 KDLLSLLQAINSNNPEIVIESCRKLMDRGREPLVVLQNL 293
>UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Bacteroidales|Rep: DNA polymerase III subunit gamma/tau
- Bacteroides thetaiotaomicron
Length = 619
Score = 77.8 bits (183), Expect = 5e-13
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTT-------TILCLARALL 375
RP TF+ +VG + L A A + GP GVGKTT TI C+
Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPTTD 71
Query: 376 G---------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 510
G V+F + + EL+A+++ +D +R + ++V +PP G++K+ I
Sbjct: 72 GEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLV-----EQVRIPPQIGKYKVYI 126
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ A A +T+E F LA KI+ I SRC + ++R+S +
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTV 186
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+ + KEN++ E ++ + A G +R AL+
Sbjct: 187 NHLSYVAAKENITAEPEALNVIAMKADGGMRDALS 221
>UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau
subunits; n=4; Deltaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Geobacter sulfurreducens
Length = 579
Score = 77.8 bits (183), Expect = 5e-13
Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 23/271 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQTF + G E L +G A + G GVGKT++ LA+AL G+S
Sbjct: 11 RPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQGMSP 70
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVIL 513
+ VLE++ +++ G+D +R ++ V P R +KI I+
Sbjct: 71 EPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRE-----LRENVKYLPSRLRYKIFII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E +F A K+ I SRC + R+ A+++A
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVA 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGH-ISPDNVFKVCDEPH 870
++ I ++E +S ++E ++ V G +R +L+ L G ++ D+V +
Sbjct: 186 RLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGVVD 245
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGY 963
++ + A +D V+A++ + GY
Sbjct: 246 RRLLLEASAAVLGRDTRSVLGVVARVDEFGY 276
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 77.8 bits (183), Expect = 5e-13
Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 22/279 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALL---GVS 384
RP TFD ++G + +VS+ A GN + + +G G GKT+T A+ALL G +
Sbjct: 10 RPATFDDLIGQD-SVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAKALLCEQGTT 68
Query: 385 FKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
++E++A+++RGID +++ I+ K R+KI I+D
Sbjct: 69 SHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIE---HTKYKPSSARYKIFIID 125
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A AL +T+E +F LA + K+ I SR R+ ++ +L+
Sbjct: 126 EVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIPQNLVLSH 185
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHP 873
+ I N E + Y +E + + + G LR +L L Q+ + V + P
Sbjct: 186 LEHIMNLEKIEYEKEALEIIARSGAGSLRDSLTLLDQAIVYSKNFVDVGTVTGMLGIIEP 245
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
++ +L K+D + + I KL Y AE I+ +
Sbjct: 246 SLLEALLGNIVKKDTTKILEFI-KLAS-DYEAEMILDEL 282
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 77.8 bits (183), Expect = 5e-13
Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 3/204 (1%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 486
I+++GPPG GKTT + LA + + E+NAS+ R +R I Q +L
Sbjct: 46 ILLSGPPGTGKTTMVHALA-----YDYGLELYEMNASDVRTASRIRETIGKALTQG-SLF 99
Query: 487 PGRHKIVILDEADSMTDGAQQA-LRRTMELYSST-TRFALAANNS-EKIIEPIQSRCAVL 657
R K+V+ DE D + A Q + +++ A+ AN+ + + P++ C V+
Sbjct: 100 GFRGKLVLFDEVDGINVRADQGGIYEIVDIVKEAKVPIAMTANDPWDPKLRPLRDICVVV 159
Query: 658 RYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISP 837
+ L + I+ + ICN E + E+ + + ++ GD+RSA+N+LQ+ A+ G ++
Sbjct: 160 QVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTVAE-TGPVTR 218
Query: 838 DNVFKVCDEPHPMVVRQMLEAXTK 909
+ V + H + +M++ K
Sbjct: 219 ERVSLLSSRAHQYDMFRMVDMVLK 242
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 77.8 bits (183), Expect = 5e-13
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFA---KTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSF 387
RP+T D +VGN + + + K GN +++ GPPG+GKTT +AR F
Sbjct: 8 RPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAR-----EF 62
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRT 564
+ + ELNAS+ R DV+++ I + K +L +K++ILDE D + + +R
Sbjct: 63 SEYI-ELNASDKRSQDVIKSTIGESSSSK-SLFGDDYKLLILDEVDGIHGTNDRGGVRAI 120
Query: 565 MELYSSTTR-FALAANNS-EKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTE 738
++ L AN+ K I ++++C VL+ S++ I + +I E +
Sbjct: 121 GDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSINKLLKQIAINEGIKANP 180
Query: 739 EGVSAVVFTAQGDLRSALNNLQSTA 813
+ + + GD+RSA+N Q+ A
Sbjct: 181 AALKELAKKSNGDMRSAINTFQALA 205
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 77.4 bits (182), Expect = 7e-13
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ+F +VG E L +K + I +GP G GKT+ A+A+ ++ +D
Sbjct: 11 RPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNPQDG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
V+E++A+++ G+D +RN + KV P ++K+ I+
Sbjct: 71 EPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRN-----IRDKVKYAPSESKYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T GA AL +T+E + F LA KI I SR + + QI
Sbjct: 126 DEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGTEQITD 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ + ++ L Y E + + ++G +R AL+ + Q+ A G H++ + V
Sbjct: 186 RLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALDVTGSVD 245
Query: 871 PMVVRQMLEAXTKQDIHEAY 930
+ ++ + ++ A+
Sbjct: 246 EAALNELFKDVIDGNVKNAF 265
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 77.4 bits (182), Expect = 7e-13
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F +VG E L++ N + +G G GKT++ ARAL+ A
Sbjct: 9 RPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKA 68
Query: 397 V-------------------LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
V +E++ +++RGID VRN I+ Q + GR+KI I+DE
Sbjct: 69 VPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIE---QTRYKPSFGRYKIFIIDE 125
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
T A AL +T+E S +F LA ++ K+ I SR R+ ++ + +++ +
Sbjct: 126 VHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVISHL 185
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
I KE +SY + + + QG LR + L+
Sbjct: 186 KTILEKEQVSYETSALEKLAHSGQGSLRDTITLLE 220
>UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Lawsonia intracellularis PHE/MN1-00|Rep: DNA
polymerase III, gamma/tau subunits - Lawsonia
intracellularis (strain PHE/MN1-00)
Length = 574
Score = 77.4 bits (182), Expect = 7e-13
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ+F +VG E L+ A++ P +++G GVGKTT A+AL A
Sbjct: 11 RPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAKALNCQQAPTA 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
V+E++ +++RG+D R + A + GR+K+ I+DE
Sbjct: 71 EPCNTCEQCKRITKGIHVDVVEIDGASNRGVDDARRLRESIAYAPME---GRYKVFIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
A +T + AL +T+E + F A K I SRC L+ +++ +
Sbjct: 128 AHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLTKEELIYNL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFK-VCDEPHPM 876
I + +EN+ Y + + + A G +R +++ L T I +NV + V
Sbjct: 188 IHVLKQENICYEDNAIQLIARRASGSIRDSMSLLGQTLMFSNGILTENVVRNVLGLAEQE 247
Query: 877 VVRQMLEAXTKQDIHEAYKV 936
++L A Q+ E K+
Sbjct: 248 FYEKLLRAFKDQNYEEVVKL 267
>UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; canis group|Rep: DNA polymerase III, subunits
gamma and tau - Ehrlichia chaffeensis (strain Arkansas)
Length = 505
Score = 77.0 bits (181), Expect = 9e-13
Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAP-NIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP F ++G E V L P +I++ G GVGKTT ++ L +S +
Sbjct: 21 RPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCISGPTS 80
Query: 397 -----------VLELNASNDRGIDVVRNK----IKMFAQQKVTLP-PGRHKIVILDEADS 528
+ N + ID N +K+ + +P + K+ I+DE
Sbjct: 81 DPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFKVYIIDEVHM 140
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
+++ A AL + +E + +F LA +KI I SRC + R+S +++ + +
Sbjct: 141 LSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDHLKVV 200
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFK 852
KEN+S+ EE + + + A G +R+AL+ L+ A I +N+ K
Sbjct: 201 AKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITK 248
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 77.0 bits (181), Expect = 9e-13
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 28/224 (12%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG------- 378
RP+T + ++ RL + T P++++ GP G GK T ++ + R L G
Sbjct: 8 RPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSEKLK 67
Query: 379 ---------------VSFKDAV--LELNASNDRGID--VVRNKIKMFAQQ-KVTLPPGR- 495
++ ++ LE+ S+ D +++ +K AQ +V L +
Sbjct: 68 IDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKI 127
Query: 496 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLS 675
K+V+++ AD +T AQ ALRRTME YS+ R L AN++ KIIEPI+SR ++R + +
Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPT 187
Query: 676 DAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 807
+I+ + +I + L + ++ + +LR A+ L++
Sbjct: 188 PEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit;
n=8; Alphaproteobacteria|Rep: Possible DNA polymerase III
tau subunit - Rhodopseudomonas palustris
Length = 623
Score = 76.6 bits (180), Expect = 1e-12
Identities = 74/290 (25%), Positives = 121/290 (41%), Gaps = 27/290 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALL------- 375
RP +FD ++G E V ++ TG P I+ G GVGKTTT LARAL
Sbjct: 35 RPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNYELPDGS 94
Query: 376 -----------GVSFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 501
GV K VLE++A++ G+D VR ++ + R+K
Sbjct: 95 VKGPTIHMPVHGVHCKAIMESRHMDVLEMDAASHTGVDDVR---QINDSVRYAPASARYK 151
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDA 681
+ I+DE ++ A A +T+E +F A K+ + SRC R+
Sbjct: 152 VYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDLRRVEAD 211
Query: 682 QILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVC 858
++ + I KE + E + V A+G +R +L+ Q+ A G + D V ++
Sbjct: 212 VLMNHLSNIAQKEGVEVEPEALGIVARAAEGSVRDSLSLFDQAIAHAAGVVRADAVRQML 271
Query: 859 DEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANF 1008
V ++ +A + DI A+ G ++S++ NF
Sbjct: 272 GLADRTRVIELFDALARGDIAAAFAEFRDQYDTGADPVVVLSDLAEFVNF 321
>UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6;
Rhizobiales|Rep: DNA polymerase III subunit tau -
Bartonella henselae (Rochalimaea henselae)
Length = 646
Score = 76.6 bits (180), Expect = 1e-12
Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ F ++G E V L +TG A ++ G GVGKTTT LARAL KD
Sbjct: 18 RPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARAL-NYKTKDI 76
Query: 397 ------------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKI 504
V+E++A++ GID +R I+ + V+ R+K+
Sbjct: 77 DQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS---ARYKV 133
Query: 505 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQ 684
I+DE ++ A L +T+E +F A K+ I SRC R+ A
Sbjct: 134 YIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRRIESAV 193
Query: 685 ILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHIS 834
+ A + +I EN+ ++ +S + A+G R AL+ Q+ A G IS
Sbjct: 194 LSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGKIS 244
>UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1;
Exiguobacterium sibiricum 255-15|Rep: DNA-directed DNA
polymerase - Exiguobacterium sibiricum 255-15
Length = 561
Score = 76.6 bits (180), Expect = 1e-12
Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 25/282 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEX---TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 372
RPQ FD +VG T+ + + +A + +GP G GKT+ +A+A+
Sbjct: 11 RPQRFDEVVGQAHITRTIQNALMEERMSHA--YLFSGPRGTGKTSLAKIIAKAINCEQAP 68
Query: 373 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIV 507
+ V E++A+++ G+D +R + KV PP +K+
Sbjct: 69 VNEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIRE-----IRDKVKYPPSEAAYKVY 123
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DE ++ GA AL +T+E + F LA KI I SRC R Q+
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEVDQL 183
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDE 864
+ ++ I + + + YTE + + A G +R AL+ L Q+ A G ++ D V +V
Sbjct: 184 MERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFSNGDLTDDAVLEVTGA 243
Query: 865 PHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ + A + + + + K+ + G + V ++
Sbjct: 244 VEDEALLAVANALQAHQVDQLLQTLEKMQRAGKDLKRFVEDL 285
>UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and tau;
n=3; Gammaproteobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024)
Length = 690
Score = 76.6 bits (180), Expect = 1e-12
Identities = 72/283 (25%), Positives = 128/283 (45%), Gaps = 22/283 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+TF ++G E + L G + + G GVGKT+ LA+ L GVS
Sbjct: 11 RPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAKCLNCETGVSS 70
Query: 388 K---DAVLELNASNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
+ + + S R +D++ R K++ + V P GR+KI ++DE
Sbjct: 71 EPCGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYKIYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
+++ + AL +T+E +F LA + +K+ I SRC +S +I+ + I
Sbjct: 131 LSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSPERIVGHLSHI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVVR 885
KE + + E + + +A G +R AL+ QS + G G +S D V + +V+
Sbjct: 191 LEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASMLGTIDHKLVQ 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCK----IGYAAEDIVSNIFRVA 1002
++ A D + +AK + A D+++ + R+A
Sbjct: 251 NLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLLHRIA 293
>UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides ovatus ATCC 8483
Length = 621
Score = 76.6 bits (180), Expect = 1e-12
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTT-------TILCLARALL 375
RP TF+ +VG + L A A + GP GVGKTT TI C+
Sbjct: 12 RPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPTAD 71
Query: 376 G---------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 510
G V+F + + EL+A+++ +D +R + ++V +PP G++K+ I
Sbjct: 72 GEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLV-----EQVRIPPQIGKYKVYI 126
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ A A +T+E F LA KI+ I SRC + ++R+S +
Sbjct: 127 IDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTV 186
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+ + +KE ++ E ++ + A G +R AL+
Sbjct: 187 NHLSYVASKEGITAEPEALNVIAMKADGGMRDALS 221
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 76.6 bits (180), Expect = 1e-12
Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 22/262 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQT +VG E L +G A + GP G GKT+T LA+A+
Sbjct: 14 RPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGK 73
Query: 373 --------LGVSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ +S + ++E++A+++ G+D +R ++K Q +L +K+ I+D
Sbjct: 74 GEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIR-ELKEKVQYSPSL--ANYKVYIID 130
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +++ A AL +T+E F LA K++ I SRC + R+S + K
Sbjct: 131 EVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRK 190
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEPHP 873
+ +I E ++ E + + +A G R N LQ A +G IS V
Sbjct: 191 LGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGD 250
Query: 874 MVVRQMLEAXTKQDIHEAYKVI 939
++ + E K+DI K +
Sbjct: 251 ERIKALAENILKKDIKNGLKTL 272
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 76.6 bits (180), Expect = 1e-12
Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 35/233 (15%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFA-KTGNAPNIIIAGPPGVGKTTTILCLARALLG------ 378
RP++ + + NE + L + + + P++++ GP G GK T + L ++ G
Sbjct: 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68
Query: 379 -------VSFKDAVLELNA----------SNDRGID---VVRNKIKMFAQ-QKVTLPPG- 492
V+ + LELN +D G + V++ +K AQ ++V
Sbjct: 69 KIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSK 128
Query: 493 -----RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVL 657
R+K VI++EA+S+T AQ ALRRTME YS R + ++ II PI+SRC ++
Sbjct: 129 DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLI 188
Query: 658 RYSRLSDAQILAKVIEICNKENLSY-TEEGVSAVVFTAQGDLRSALNNLQSTA 813
R SD++I + ++ E + T++ + + + G+LR +L L+S A
Sbjct: 189 RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241
>UniRef50_UPI0000DAE674 Cluster: hypothetical protein
Rgryl_01000912; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000912 - Rickettsiella
grylli
Length = 523
Score = 76.2 bits (179), Expect = 2e-12
Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 18/265 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RPQ+FD ++G E T L +T + + G GVGKTT LA+ L
Sbjct: 11 RPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAKCLNCQTQITP 70
Query: 373 --LGVSFKDAVLELNASNDR-GIDVV-RNKIK----MFAQQKVTLPPGRHKIVILDEADS 528
+ N D +D R K++ + A T GR+KI ++DE
Sbjct: 71 EPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRYKIYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E F LA +++++ I SRC ++ QI ++ I
Sbjct: 131 LSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCLQFHLKTITTVQISNQLANI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVR 885
KE + + E ++ + AQG LR AL+ L Q+ A +++ ++ + +
Sbjct: 191 LKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQAIAYTNQNLTKQDINTLLGHVAHSEII 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCKIG 960
Q+L+A +D + + ++ + ++G
Sbjct: 251 QLLDALILEDTAKLWSLVEQFSELG 275
>UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Bacillus thuringiensis serovar israelensis ATCC
35646|Rep: DNA polymerase III subunit gamma/tau -
Bacillus thuringiensis serovar israelensis ATCC 35646
Length = 431
Score = 76.2 bits (179), Expect = 2e-12
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Frame = +1
Query: 403 ELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSS 582
E+NAS D G+ + + ++ + + P G KI ILDE ++ AQ +L + +E
Sbjct: 108 EINASKDSGLTAINSLLE---EAQYPNPDGSWKIYILDECHRISIPAQNSLLKLVEEPPE 164
Query: 583 TTRFALAANNSEKIIEPIQSRCAV-LRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
F + +K+++ + +RC + L + S+ Q+ +++IC KE +SY +G+S +V
Sbjct: 165 NVLFMFCTTDPDKMLDTLLNRCNIKLDVKKPSEEQLTQILLDICVKEGISYDRKGLSLIV 224
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
++ +R AL +L++ V K+ D+ + A K D H+ +I
Sbjct: 225 DRSELVIRQALMDLENVIVQTESAEHRFVSKIFDKHPNSLYFDFYRALLKHDTHQFVSII 284
Query: 940 AKLCKIGYAAEDIVSNI 990
K+ K ++ V N+
Sbjct: 285 HKV-KTKMTVQEFVKNL 300
>UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep:
Protein EbsC - Campylobacter curvus 525.92
Length = 553
Score = 76.2 bits (179), Expect = 2e-12
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 21/285 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALL---GVSF 387
RP+ FD ++G E L G + + +G G GKT++ ++AL+ G +
Sbjct: 9 RPKNFDELIGQEAVSKSLTHALDEGRISHAYLFSGLRGSGKTSSARIFSKALVCEKGPTS 68
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ ++E++A++ R ID +R I+ Q K R+KI I+DE
Sbjct: 69 RPCETCPQCIMANESRHMDIIEMDAASHRKIDDIRELIE---QTKYKPAMARYKIFIIDE 125
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T A AL +T+E S +F LA + K+ + SR R+ ++ I+ +
Sbjct: 126 VHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIGKNSIIKHL 185
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
I +KE +SY E + + + +G LR L L Q+ G +I+ +V + P
Sbjct: 186 EFILSKEGISYEREALEILARSGRGSLRDTLTLLDQAIIYGANNITQSSVASMLGLLDPS 245
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFR 1011
+ Q+L D +++A+L +I Y E I+ + +AN +
Sbjct: 246 RIEQILSLVMLSDKEGLRELVAEL-EI-YEPEMIIDEL--IANLK 286
>UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; candidate division TM7 genomosp. GTL1|Rep: DNA
polymerase III, subunits gamma and tau - candidate
division TM7 genomosp. GTL1
Length = 454
Score = 76.2 bits (179), Expect = 2e-12
Identities = 62/271 (22%), Positives = 125/271 (46%), Gaps = 12/271 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAV---FAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 390
R +T D +VG + L + G+A + GP G GKT+ LA A+ + ++
Sbjct: 10 RSRTLDEVVGQKHITDVLLKALQHKRIGHA--FLFTGPRGTGKTSIARILAHAINDLPYE 67
Query: 391 DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQ 549
+ ++E++A+++R ID +R+ ++KV + P K+ I+DE +T +
Sbjct: 68 NDSLHLDIVEIDAASNRRIDDIRD-----LREKVHIAPTSAPFKVYIIDEVHMLTGESFN 122
Query: 550 ALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS 729
AL +T+E + F LA + K+ I SR + + +A++ + I +EN+
Sbjct: 123 ALLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPEAEVAKHLSHIAEQENIK 182
Query: 730 YTEEGVSAVVFTAQGDLRSALNNLQ--STAQGFGHISPDNVFKVCDEPHPMVVRQMLEAX 903
E+ + + +G R +++ L + G H++ + V +++E
Sbjct: 183 IDEDALELIAEHGEGSFRDSISLLDQLGSVAGDEHVTAKMIESTLGLAPRARVEKLIELT 242
Query: 904 TKQDIHEAYKVIAKLCKIGYAAEDIVSNIFR 996
DI A K++ L K+G + +V+ + +
Sbjct: 243 EAHDIGGATKLLDNLEKVGTSPTVLVNQLLK 273
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 75.8 bits (178), Expect = 2e-12
Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 22/279 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV-SFKD 393
RPQ F +VG + L K AP + GP G GKT++ LA++L + S K
Sbjct: 11 RPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSLNCLRSSKP 70
Query: 394 A--------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
V+E++A++ G+D +R I+ V R+K+ ++
Sbjct: 71 TPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQC---RYKVYVI 127
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA + ++++ I SRC + R+ +++A
Sbjct: 128 DECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPLGEMVA 187
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHP 873
+ I +KE + E ++ V +QG LR A + L + I+ + V+++
Sbjct: 188 HLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLTGAVPE 247
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+RQ+L A ++D + +L + G I+ N+
Sbjct: 248 QDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNL 286
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 75.8 bits (178), Expect = 2e-12
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RPQTF+ ++G + ++ K PN + G G+GKTTT +A++L
Sbjct: 13 RPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNCSNGIDN 72
Query: 373 ------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ S VLE++A++ G+D VR+ I+ T ++KI I+D
Sbjct: 73 LCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTT---AKYKIFIID 129
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E ++ A AL +T+E +F A +KI + SRC SR+ ++
Sbjct: 130 EVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSLELFDF 189
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
+ +I KEN + +++ + +V ++G +R AL+ L
Sbjct: 190 IRKIKEKENGNASDDALKLIVKISEGSVRDALSLL 224
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 75.8 bits (178), Expect = 2e-12
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP +F + G V L + K + A + +GP GVGKTT +A+ + ++ K+
Sbjct: 16 RPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGVNCLNLKEN 75
Query: 397 --------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
++E++A+++R ID +R+ + Q V G K+ I+D
Sbjct: 76 GEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPVE---GLKKVYIID 132
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
EA +T A AL +T+E + F LA EKI+ I SRC + L ++ A
Sbjct: 133 EAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDFKPLDLKEMKAG 192
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
+ I +ENLS T++ S + + G +R +++ L+
Sbjct: 193 LEHILKEENLSMTDDVYSVIYENSSGSMRDSISILE 228
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 75.8 bits (178), Expect = 2e-12
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ F+ ++G E TV L + G P+ + G G+GKTT LA L GV+
Sbjct: 15 RPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMCLNCGTGVTA 74
Query: 388 KD--------AVLELNASNDRGIDVV-RNKIKMFAQ--QKVTLPPG--RHKIVILDEADS 528
A++ + +D R K++ + V P R+KI ILDE
Sbjct: 75 NPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRYKIYILDEVHM 134
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E + +F A KI+ I SRC RL + + +
Sbjct: 135 LSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDRDGLARYLAHV 194
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNV 846
+ E ++Y +EG++A+ A G +R AL+ L Q+ A G G + +V
Sbjct: 195 LDVEQIAYDQEGLAAISHAADGSVRDALSLLDQAIAHGGGRVDYTHV 241
>UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: DnaX
protein - Listeria innocua
Length = 579
Score = 75.4 bits (177), Expect = 3e-12
Identities = 68/272 (25%), Positives = 123/272 (45%), Gaps = 25/272 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEX---TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 390
RPQ+F +VG E T+ V KT +A + +GP G GKT+ A+A+
Sbjct: 11 RPQSFQDVVGQEHVTKTLKNAIVQNKTSHA--YLFSGPRGTGKTSAAKIFAKAINCEHGH 68
Query: 391 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 507
D VLE++A+++ G++ +R+ ++KV P ++K+
Sbjct: 69 DGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRD-----IREKVKYAPTVAKYKVY 123
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DE ++ GA AL +T+E F LA K+ I SR + R++ I
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDI 183
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDE 864
+ ++ I +E + Y E+ + V A+G +R AL+ L Q + G ++ ++ ++
Sbjct: 184 IGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGS 243
Query: 865 PHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
++ +++ A D EA + L G
Sbjct: 244 VAQNLLTKLVSAAFDGDAAEAISTLTALLAEG 275
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 75.4 bits (177), Expect = 3e-12
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 23/217 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
R QTFD +VG E L A + + +GP G GKT+ A+A+
Sbjct: 10 RSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNCPHQADG 69
Query: 373 ------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVI 510
S +D V+E++A+++ G+D +R + K T P R +K+ I
Sbjct: 70 EPCNNCDICHDITNGSLED-VIEIDAASNNGVDEIRE-----IRDKSTYAPSRATYKVYI 123
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ GA AL +T+E + F LA KI I SR + + I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
+ +I KE LS+ EE +S + A+G +R AL+ L
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSIL 220
>UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Clostridium|Rep: DNA polymerase III subunits gamma
and tau - Clostridium tetani
Length = 552
Score = 75.4 bits (177), Expect = 3e-12
Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 23/297 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP TF+ ++G + L K A + G G GKT+T LA+A+ + +D
Sbjct: 14 RPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAVNCLDLRDG 73
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
+ EL+A+++ +D +R+ I ++V PP ++K+ I+
Sbjct: 74 EPCNECEICKKINSNMLIDIEELDAASNNSVDNIRSII-----EEVYYPPREAKYKVYIM 128
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA A +T+E S F LA + +K+ I SRC + R+ I
Sbjct: 129 DEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKSEDIFQ 188
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ I ++ + + + + G +R AL L Q + G G + ++V +
Sbjct: 189 RLRFIITQQGFFADDNSLRLISRISDGAMRDALGVLDQVISTGNGRVEYEDVVSILGLIT 248
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLASS 1041
+ ++ ++ K+DI E K+I ++ G + +I+ ++ + + R + +K++ +
Sbjct: 249 NENLIKLTDSIIKKDIEECVKIIEEVIFSGKDSNNIIKDL--ILHMRNLLIIKVSQN 303
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 75.4 bits (177), Expect = 3e-12
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 22/232 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ FD +VG E + L +G AP + +GP G GKT++ LAR+L +S
Sbjct: 13 RPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNCLSHDGP 72
Query: 397 ---------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
V+E++A+++ G+D +R+ I+ + + R K+ ++
Sbjct: 73 TPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIE---RSRFAPVQARWKVYVV 129
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA + ++++ I SRC + R+ + +
Sbjct: 130 DECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEALNS 189
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVF 849
+ I +E++ E + V AQG LR A + L + G I D V+
Sbjct: 190 HLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVW 241
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 74.9 bits (176), Expect = 4e-12
Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 19/262 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F IVG + + L K+GN + + +GP G GKTT A A+ D
Sbjct: 20 RPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAINCTHKTDL 79
Query: 397 V----------------LELNASNDRGIDVVRNKIKMFAQQKVTLPP-GRHKIVILDEAD 525
+ +E++A++ G+ +R I + + P +KI ILDE
Sbjct: 80 IEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREII----ENSINFPQISPYKIYILDEVH 135
Query: 526 SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 705
++ A A +T+E F LA KI I SR + L + +I ++
Sbjct: 136 MLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALKEDEICHRLEF 195
Query: 706 ICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPHPMVV 882
I KE + Y + + +V +QG LR A++ L+ A G G+++ N+ ++ + ++
Sbjct: 196 ILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATFGSGYVNQKNINELFGLVNKEIL 255
Query: 883 RQMLEAXTKQDIHEAYKVIAKL 948
+ A D +Y+++ ++
Sbjct: 256 VNFVNALFLADSKISYEILEQI 277
>UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Colwellia psychrerythraea 34H|Rep: DNA polymerase
III, gamma/tau subunit - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 715
Score = 74.9 bits (176), Expect = 4e-12
Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 20/252 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ F ++G E V+ LA ++ + G GVGKTT A++L LG++
Sbjct: 11 RPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGITD 70
Query: 388 K-----DAVLELNASNDRGIDVVR----NKIKMFAQQK----VTLPP--GRHKIVILDEA 522
K DA ++++ R +D++ +K K+ ++ V P GR K+ ++DE
Sbjct: 71 KPCGKCDACIDID--QGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYLIDEV 128
Query: 523 DSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVI 702
++ + AL +T+E +F LA + +K+ + SRC L+ QI K+
Sbjct: 129 HMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQIEDKLA 188
Query: 703 EICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMV 879
EI + E +S+ + ++ + A+G +R +L+ Q+ AQG GHI+ N+ ++
Sbjct: 189 EILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQMLGGIDQNW 248
Query: 880 VRQMLEAXTKQD 915
V Q++ KQD
Sbjct: 249 VYQLVITLLKQD 260
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 74.9 bits (176), Expect = 4e-12
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP TF +VG + S L K + A + GP GVGKTT LA+ + + +
Sbjct: 12 RPMTFKQVVGQQSITSTLQNAIKNNHLAQAFLFTGPRGVGKTTCARILAKTINCTNLNEQ 71
Query: 397 --------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 510
+ EL+A+++ +D +R+ + ++V +PP G++K+ I
Sbjct: 72 LEPCDQCESCRSFNSSSSFNIHELDAASNNSVDDIRSLV-----EQVRIPPQVGKYKVYI 126
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ A A +T+E + +F LA KII I SRC + + R+ I
Sbjct: 127 IDEVHMLSQAAFNAFLKTLEEPPAYAKFILATTEKHKIIPTILSRCQIFDFRRIMVEDIA 186
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+ + E++ E + + A G LR AL+
Sbjct: 187 QHLDYVAASEHIETEPEALHIIAQKADGALRDALS 221
>UniRef50_Q057E1 Cluster: DNA polymerase III, g and t subunits; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: DNA
polymerase III, g and t subunits - Buchnera aphidicola
subsp. Cinara cedri
Length = 368
Score = 74.9 bits (176), Expect = 4e-12
Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 23/299 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNA-PNIIIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQ F+ I+G++ TV + + +++G GVGKTT LA+ L +G++
Sbjct: 11 RPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAKCLNCKIGITS 70
Query: 388 ------KDAV----------LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
K+ + +EL+A++ +D + KI M K GR KI ++DE
Sbjct: 71 IPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDI--KI-MLDTTKYAPMCGRFKIYLIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ + AL + +E + +A N KI + I SRC ++ S ++ I +
Sbjct: 128 VHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITLHNIYNFL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ---STAQGFGHISPDNVFKVCDEPH 870
+I KEN+ +E + + T+QG +R+ALN L+ S+ + I +FK+
Sbjct: 188 KKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIFKLLGILD 247
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLASSXK 1047
V ++ D ++ + ++ KIG +IVS++ + F I +K+ K
Sbjct: 248 KKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSL--IIFFHKISLIKINQKKK 304
>UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subunit;
n=3; Thermus thermophilus|Rep: DNA polymerase III
holoenzyme tau subunit - Thermus thermophilus
Length = 529
Score = 74.9 bits (176), Expect = 4e-12
Identities = 73/279 (26%), Positives = 118/279 (42%), Gaps = 19/279 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP TF +VG E L + G A + +GP GVGKTTT LA A+ G +D
Sbjct: 9 RPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAV-GCQGEDP 67
Query: 397 ------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEA 522
V+E++A+++ ++ VR + ++ P K+ ILDEA
Sbjct: 68 PCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAP---RKVFILDEA 124
Query: 523 DSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVI 702
++ A AL +T+E F A E++ I SR R+ RL++ +I K+
Sbjct: 125 HMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTEEEIAFKLR 184
Query: 703 EICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVV 882
I EE + + A G LR A + L+ G ++ V + P +
Sbjct: 185 RILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLEGPLTRKEVERALGLPPREAL 244
Query: 883 RQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
++ + + EA + +L GYA +VS + V
Sbjct: 245 AEIAASLARGKTAEALGLARRLYGEGYAPRSLVSGLLEV 283
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 74.9 bits (176), Expect = 4e-12
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Frame = +1
Query: 283 AKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV--------------------- 399
A+ N P++++ GP G G+ T +L R++ GV D +
Sbjct: 28 ARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGVQTLDYIPSTMLYETNTDTCEVNILSTA 87
Query: 400 --LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEL 573
LELN S DV + + + + K+V+L +AD ++ AQQALRR ME
Sbjct: 88 CHLELNPSEMGNHDVFIIQTVLKETASTSSIGDKFKVVVLQDADKLSFTAQQALRRLMEQ 147
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL--SYTEEGV 747
Y++T + L A + +I PI SRC +R SD +I+ + K L +T+E +
Sbjct: 148 YAATCKLILMAESISGLIPPIVSRCFCIRVPGFSDEEIVHALETTITKHRLMQGFTKESL 207
Query: 748 SA----VVFTAQGDLRSALNNLQS 807
A V A+GDLR A LQ+
Sbjct: 208 HALLPEVATVARGDLRRAFLLLQT 231
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 54.4 bits (125), Expect(2) = 5e-12
Identities = 33/135 (24%), Positives = 65/135 (48%)
Frame = +1
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
VLEL+A++ G+ +R+ + V+ R+K+ I+DE +++ + AL +T+E
Sbjct: 128 VLELDAASRTGVADMRDLLDSARYGPVS---ARYKVYIIDEVHMLSNASFNALLKTLEEP 184
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
+F A K+ + SRC RL ++ + + E + +EE ++ +
Sbjct: 185 PPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALI 244
Query: 757 VFTAQGDLRSALNNL 801
A+G +R L+ L
Sbjct: 245 ARAAEGSVRDGLSLL 259
Score = 40.3 bits (90), Expect(2) = 5e-12
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL 372
RP+ F+ ++G E V L+ +TG A ++ G GVGKTTT LAR L
Sbjct: 37 RPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
>UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n=2;
Clostridium difficile|Rep: DNA polymerase III subunit
gamma/tau - Clostridium difficile (strain 630)
Length = 545
Score = 74.5 bits (175), Expect = 5e-12
Identities = 65/294 (22%), Positives = 139/294 (47%), Gaps = 21/294 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVS---- 384
RPQ F+ ++G + + L + N + + G G GKT+T +RA+ ++
Sbjct: 10 RPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNKINE 69
Query: 385 ------------FKDA---VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
KD V+E++A+++ +D +R ++ K + ++K+ I+DE
Sbjct: 70 EPCNECEICESVLKDNTMDVVEIDAASNNSVDDIR---ELRESVKYSPANAKYKVYIIDE 126
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ GA AL +T+E S F LA KI I SRC + R++ + ++
Sbjct: 127 VHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMTLRM 186
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
+IC E + ++ ++ + +QG LR AL+ L Q + G I +V ++ +
Sbjct: 187 KKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSVNIE 246
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLAS 1038
+ ++ + +QD ++ +++ + G ++++++ + +FR + K++S
Sbjct: 247 QLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL--IDHFRNLMVCKVSS 298
>UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1;
Limnobacter sp. MED105|Rep: AAA ATPase, central region -
Limnobacter sp. MED105
Length = 586
Score = 74.5 bits (175), Expect = 5e-12
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 18/250 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ FD +VG V L+ + + G GVGKTT LARA+ G+S
Sbjct: 14 RPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARAVNCEQGISR 73
Query: 388 K-----DAVLELNASN-------DRGIDVVRNKIKMFAQQKVTLPP-GRHKIVILDEADS 528
A +E++ D + ++++ + + P GR+K+ ++DE
Sbjct: 74 TPCGKCQACVEISQGRFVDLLEVDAATNTRVDEMRALLENAMYAPTAGRYKVYVIDEVHM 133
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ A A+ +T+E F LA + +KI + SRC +L Q+ + I
Sbjct: 134 LSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPPDQLADHLAHI 193
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVVR 885
++E +++ + + A+G +R AL+ Q+ A GH++ D V + VV
Sbjct: 194 LSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSAGHVTEDTVRTMLGAIDQQVVH 253
Query: 886 QMLEAXTKQD 915
Q+L+A + D
Sbjct: 254 QLLQALAQGD 263
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 74.5 bits (175), Expect = 5e-12
Identities = 72/268 (26%), Positives = 112/268 (41%), Gaps = 21/268 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
R QTFD ++G E V L G + + GP GVGKTT LA+A+
Sbjct: 11 RSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCTAPPAE 70
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ V+E++A++ ++ R I+ + R K+ I+DE
Sbjct: 71 RPCGVCESCRAIAEGHAVDVIEMDAASHTSVEDAREIIERVQFRPAV---ARTKVYIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A AL +T+E F LA K+ I SRC ++R + A I A +
Sbjct: 128 VHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTVASIAAHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
I +E ++ A+ A G +R AL+ L Q A G G IS + V +
Sbjct: 188 RSIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAYGGGTISLEQVRNLLGAGEMQ 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
V + +A D+ A +VIA + G
Sbjct: 248 EVTALADALIAGDLPGALQVIANVAAAG 275
>UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2;
Azoarcus|Rep: DNA polymerase III subunit Tau - Azoarcus
sp. (strain BH72)
Length = 662
Score = 74.5 bits (175), Expect = 5e-12
Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 25/290 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP++F +VG E V L+ TG + + G GVGKTT LA+AL GV+
Sbjct: 11 RPKSFGTLVGQEHVVRALSHALATGRLHHAYLFTGTRGVGKTTISRILAKALNCETGVTA 70
Query: 388 K-----------DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ DA +E++A+++RG++ + + V GR+K+ ++DE
Sbjct: 71 EPCGQCEACRAIDADRFPDYVEMDAASNRGVEDMAALLDKAVYAPVQ---GRYKVYMIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T A A+ +T+E +F LA + +KI + SRC ++ I+ +
Sbjct: 128 VHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQGHIVEHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
+ E + + + + A G +R AL+ L Q+ A G G ++ + V +
Sbjct: 188 DRVLTAEAVPFEPPALRHIAKAANGSMRDALSLLDQAIAHGAGKVAEEQVTHMLGTVGDD 247
Query: 877 VVRQMLEAXTKQDIHEAYKVI----AKLCKIGYAAEDIVSNIFRVANFRY 1014
+ +LEA D+ V A+ A + + S + RVA +++
Sbjct: 248 HLHAVLEALAAADMAALLAVADGMEARSLSFDAALQALASLLHRVALYQF 297
>UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains;
n=4; Neisseria|Rep: DNA polymerase III tau and gamma
chains - Neisseria meningitidis serogroup A
Length = 709
Score = 74.5 bits (175), Expect = 5e-12
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP+TF +VG E V L G + ++ G GVGKTT LA++L
Sbjct: 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG 70
Query: 373 --LGVSFK----DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
GV DA +LE++A+++ GID +R ++ AQ T G++K+ I+DE
Sbjct: 71 EPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN-AQYAPTA--GKYKVYIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A A+ +T+E +F LA + K+ + SRC ++ Q+ +
Sbjct: 128 VHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVARHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
+ + E ++Y + + A G +R AL+ L Q+ A G G ++ ++V ++
Sbjct: 188 AYVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQ 247
Query: 877 VVRQMLEAXTKQD 915
+ ++L Q+
Sbjct: 248 YLYELLTGIINQN 260
>UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;
n=3; Thermoanaerobacter|Rep: DNA polymerase III,
gamma/tau subunits - Thermoanaerobacter tengcongensis
Length = 518
Score = 74.1 bits (174), Expect = 6e-12
Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 23/270 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP++F +VG + V L K G + + G G GKT+ A+A+ ++ KD
Sbjct: 10 RPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNPKDG 69
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
VLE++A+++ ++ VR ++ V P ++K+ I+
Sbjct: 70 EPCNSCEVCQAINTGTTMDVLEIDAASNNSVNDVRE-----LRESVIYSPSLTKYKVYII 124
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA AL +T+E F LA EK+ + I SRC + ++ QI
Sbjct: 125 DEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIAQ 184
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPH 870
+ IC + + G+ A+ G +R A++ L+ A G I+ ++V ++ +
Sbjct: 185 NLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEILGVAN 244
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
++ +L+ ++D + + + K+ G
Sbjct: 245 EEMLFSLLDHIYEKDAVASLQQLDKILSYG 274
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 74.1 bits (174), Expect = 6e-12
Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RP TF+ ++G + V L FA A ++ G GVGKTTT +ARAL
Sbjct: 40 RPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARALNFQTDGID 99
Query: 373 ---------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 507
+G S V+E++A++ G+ +R ++ V+ R+K+
Sbjct: 100 APSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIREILEGVRYAPVS---ARYKVY 156
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DE ++ A AL +T+E +F A K+ + SRC R+ D ++
Sbjct: 157 IIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRI-DREV 215
Query: 688 LAKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCD 861
L ++ IC E S +G+S + A+G +R AL+ L Q+ QG P + ++ D
Sbjct: 216 LTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLLDQAIVQGSDEDGPVSAPQIRD 275
>UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Lentisphaera araneosa HTCC2155|Rep: DNA
polymerase III, gamma and tau subunits - Lentisphaera
araneosa HTCC2155
Length = 890
Score = 74.1 bits (174), Expect = 6e-12
Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 24/284 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RPQTFD + G + S L + + I G G+GKTT+ A+AL
Sbjct: 11 RPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAKALNCETPRAD 70
Query: 373 ------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ V+E++ +++ +D +R +I+ AQ P +KI I+D
Sbjct: 71 LNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIR-QIREGAQYTPARCP--YKIFIID 127
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +++ A AL +T+E +F A +++ I SRC L + I +
Sbjct: 128 EVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIPRNVIAGR 187
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLR---SALNNLQSTAQGFGHISPDNVFKVCDEP 867
+ IC EN++ + ++A+ TA G +R S L+ + S G IS +V V
Sbjct: 188 LKHICETENVAIEDSAINAISRTANGGMRDGLSILDQMISFCSGNEIISEQDVIDVFGMS 247
Query: 868 HPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
++ + A + + I L K E + S +F++
Sbjct: 248 SSNELKLIASAILQNQAPALIEAIDTLAKAARNMEQLYSELFQL 291
>UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas
salina|Rep: DNA polymerase III - Rhodomonas salina
(Cryptomonas salina)
Length = 370
Score = 74.1 bits (174), Expect = 6e-12
Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 17/293 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVS--RLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKD 393
RPQ F I+G + +LA+ AK + + G G GKTT +A+A+ S K+
Sbjct: 13 RPQNFTNIIGQNSATNYLQLAIAAKKITFAYLFV-GQHGSGKTTLARVMAKAINCTSSKN 71
Query: 394 AV---------LELNASND-RGIDVVRNK-IKMFAQ--QKVTLPP--GRHKIVILDEADS 528
+ L S D ID +N I+ + +KV P ++K+ I+DEA
Sbjct: 72 TPCNVCENCVNIHLGRSFDFYEIDAAKNTGIENIREIIEKVQYSPIMSKYKVCIIDEAHM 131
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ A +L +T+E T F L+ KI I SRC L + + D ++ + ++
Sbjct: 132 LSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDHDLIIGITKV 191
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQ 888
E L T +G+ ++ +G R ALN ++ + G I+ ++ +
Sbjct: 192 VYNEKLRITNKGIENLIKITKGSFRDALNIVELFSVGEKKITAKSLSDKYLIIPIAITNL 251
Query: 889 MLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVANFRYI*XVKLASSXK 1047
++E +I E +I + + ED++ + + RYI K+ S+ K
Sbjct: 252 LIEKVLSLNILEVLTIIDYIQFNNWNEEDVIDSTYNQLVTRYINNKKMNSTNK 304
>UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida
albicans unknown function; n=1; Yarrowia lipolytica|Rep:
Similar to ca|CA5054|IPF3704 Candida albicans unknown
function - Yarrowia lipolytica (Candida lipolytica)
Length = 626
Score = 74.1 bits (174), Expect = 6e-12
Identities = 68/202 (33%), Positives = 94/202 (46%), Gaps = 7/202 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RPQT D I G + ++ L F G P+II GPPGVGKTT LAR L S +
Sbjct: 130 RPQTLDDISGQKELMAVLRRFVAYGRIPSIIFWGPPGVGKTT----LARILAKTS-GNRF 184
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
+EL+A+ + DV K+ A + L R I+ +DE + Q L +E
Sbjct: 185 VELSATQNNVADV--KKVIDQANNEWKLLK-RGTILFIDELHRFSKAQQDVLLPAVEKGD 241
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI-------LAKVIEICNKENLSYTE 738
T A N S +++ + SRC VL +LS I L K + E + TE
Sbjct: 242 ITLIGATTENPSFRLVGALTSRCRVLTLKKLSMKDIKEVVERSLVKYNDTAEHEVILPTE 301
Query: 739 EGVSAVVFTAQGDLRSALNNLQ 804
+ + A GD+RSALN L+
Sbjct: 302 V-IDYIAGIADGDVRSALNILE 322
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 73.7 bits (173), Expect = 8e-12
Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 21/278 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ F +VG E V L+ K + ++ G GVGKTT LA++L G +
Sbjct: 11 RPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSLNCETGTTA 70
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ +LE++A+++ GID +R ++ AQ T+ GR K+ I+DE
Sbjct: 71 EPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLEN-AQYAPTM--GRFKVYIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A A+ +T+E +F LA + +K+ + SRC ++ Q+ + +
Sbjct: 128 VHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSLRNMTPQQVSSHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
+ + E + Y ++ + A G +R A + L Q+ A G G + D V +
Sbjct: 188 AHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAYGLGEVKEDGVRAMLGAVDRR 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
+ +L+A D +L + G + + +S +
Sbjct: 248 YLFTLLQALAASDGPALMAEADRLAERGVSFDSALSEL 285
>UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Aeromonas|Rep: DNA polymerase III, subunits
gamma and tau - Aeromonas salmonicida (strain A449)
Length = 865
Score = 73.7 bits (173), Expect = 8e-12
Identities = 68/265 (25%), Positives = 120/265 (45%), Gaps = 18/265 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP TF+ +VG ++ L G + +++G GVGKTT LA++L G+S
Sbjct: 11 RPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISS 70
Query: 388 KD-AVLELNASNDRG--IDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
V + D+G +D++ R K++ + V P GR K+ ++DE
Sbjct: 71 HPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRFKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + +K+ I SRC L QI ++ +
Sbjct: 131 LSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLECV 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVVR 885
++E + + A+ A G +R AL+ Q+ A G G + ++V + +
Sbjct: 191 LDQEAQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRLESVLAMLGTLDHRHLH 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCKIG 960
Q+LEA +QD I ++ +G
Sbjct: 251 QLLEAILRQDAAATMAKITEIATLG 275
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 73.7 bits (173), Expect = 8e-12
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 25/227 (11%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ+FD ++G+E V L FA A I+ G GVGKTTT +ARAL
Sbjct: 22 RPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARALNYETETID 81
Query: 373 ---------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 507
+ S V E++A++ G+ +R I+ + GR+K+
Sbjct: 82 RPTVDMPVEGRHCRAIAESRHPDVYEMDAASRTGVGDIRELIEGVRYAPIE---GRYKVY 138
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DE ++ A AL +T+E + +F A K+ + SRC R +
Sbjct: 139 IIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRFDITSL 198
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFG 825
A + I KE + ++E + + A+G +R AL+ L Q+ Q G
Sbjct: 199 SAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQALVQKAG 245
>UniRef50_A2E9V5 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 694
Score = 73.7 bits (173), Expect = 8e-12
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 12/215 (5%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 387
RPQ + ++GN+ + + L F+K ++I+GPPG+GKT+T L LA++ G
Sbjct: 227 RPQNRNDLIGNKDLIEKIDNWLITFSKQDKKA-VLISGPPGIGKTSTALLLAKSR-GYH- 283
Query: 388 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP------PGRHKIVILDEADSMTDGAQQ 549
V+E NAS+ R + + K K + +I DE D M+ G +
Sbjct: 284 ---VVEYNASDVRNKAAIEDIAKTLFNGKTLYSFTQQNTNNKQHAIIFDEIDGMSTGDRG 340
Query: 550 ALRRTMELYSSTTR--FALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKEN 723
++ + +T F + + + ++PI +++S +++ +V EI +E
Sbjct: 341 GVQALAQFIEKSTFPIFCICNDRQSEKLKPILKYVLDIQFSAPDKKEMIQRVFEISKQEG 400
Query: 724 LSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGH 828
+ + + A + + GD+RSALN LQ + G+
Sbjct: 401 IKIDRKNLFAAIDKSGGDMRSALNALQLWSSNCGN 435
>UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4;
Leptospira|Rep: DNA polymerase III subunit gamma -
Leptospira interrogans
Length = 503
Score = 73.3 bits (172), Expect = 1e-11
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 20/215 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RPQ F ++ + + L K+G + I GP GVGKTT LA+ L
Sbjct: 37 RPQKFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCQNPIDN 96
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ VLE++A+++RGI+ +R ++ K G++K+ I+DE
Sbjct: 97 EPCNECNSCSEITRGISSDVLEIDAASNRGIENIR---ELRDNVKFAPMGGKYKVYIIDE 153
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+TD + AL +T+E + F LA KI E I SRC + ++ + +
Sbjct: 154 VHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSRCQDFIFKKVPLSVLQDYS 213
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
++C EN+ Y +EG+ V G +R L+ ++
Sbjct: 214 EKLCKIENVQYDQEGLFWVAKKGDGSVRDMLSFME 248
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 73.3 bits (172), Expect = 1e-11
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 22/232 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQTF +VG + L T AP + GP G GKT++ LA++L +S+
Sbjct: 11 RPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCLSYDHP 70
Query: 397 ---------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
V+E++A+++ G+D +R I+ V R+K+ ++
Sbjct: 71 TPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQC---RYKVYVI 127
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F LA + ++++ I SRC + R+ ++
Sbjct: 128 DEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAMVK 187
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVF 849
+ I +E + T E + + AQG LR A + L + G I+ + V+
Sbjct: 188 HLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEITVERVW 239
>UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau;
n=1; uncultured marine bacterium EB0_49D07|Rep: DNA
polymerase III subunits gamma/tau - uncultured marine
bacterium EB0_49D07
Length = 539
Score = 73.3 bits (172), Expect = 1e-11
Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 23/283 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP +F +VG E + L I +G GVGKTT ++ L
Sbjct: 11 RPSSFSEVVGQEHVLKALENSISQNKLHQAYIFSGTRGVGKTTIARVFSKCLNCMQADSP 70
Query: 373 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
+ + LE++A++ G+D +R + + R KI ++
Sbjct: 71 QVISCDKCSACEEIKIGRHMEFLEVDAASRTGVDDMRELLDSVQYKPAN---ARFKIYLI 127
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ + AL +T+E F +A EK+ + + SRC L + +A+I
Sbjct: 128 DEVHMLSKSSFNALLKTLEEPPPHVMFLMATTEVEKVPKTVLSRCLQLNLKVIPEAKIQL 187
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
+ + + E++ Y EE ++ + +AQG +R L L Q+ A G G ++ D+V +
Sbjct: 188 HLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLLDQAIAHGNGSLNADDVKALLGTID 247
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
+ +++E + AY + K+ ++ E ++ + V
Sbjct: 248 QSYIIELVEHVVAGNGDGAYNALHKITELNVEYEQVLKILISV 290
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 73.3 bits (172), Expect = 1e-11
Identities = 37/104 (35%), Positives = 60/104 (57%)
Frame = +1
Query: 499 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSD 678
K+VI++E D++T AQ +LRRTME Y R L + KII PI+SRC ++R
Sbjct: 134 KVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCLLIRVPAPDQ 193
Query: 679 AQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQST 810
Q+ + +I + N +++ ++ + + G+LR A+ LQST
Sbjct: 194 TQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQST 237
>UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12;
Xanthomonadaceae|Rep: DNA polymerase III subunit -
Xylella fastidiosa
Length = 608
Score = 72.9 bits (171), Expect = 1e-11
Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 21/266 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL-------- 372
RP+ F +VG E V L+ ++G + + G GVGKTT A++L
Sbjct: 11 RPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSLNCEQGTSA 70
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ V +LE++A+++ G+D VR I+ AQ + G+ K+ ++DE
Sbjct: 71 DPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIEN-AQYMPSR--GKFKVYLIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A AL +T+E +F LA + +K+ + SRC RL + QI ++
Sbjct: 128 VHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEEQIQRQI 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
+I E ++ + + + A G LR L+ L Q+ A G + V +
Sbjct: 188 AKILTAEQITADDAAIIELSKAADGSLRDGLSLLDQAIAYAGGVLREGAVRDMLGTVDRT 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCK 954
V ML A D +VIA L +
Sbjct: 248 QVEVMLAALIAGDGDRLLRVIATLAE 273
>UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Pirellula sp.|Rep: DNA polymerase III gamma and tau
subunits - Rhodopirellula baltica
Length = 676
Score = 72.9 bits (171), Expect = 1e-11
Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 21/271 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F +VG + L +T + + G GVGKT+T A+AL A
Sbjct: 45 RPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKALNHPDGPTA 104
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
V+E++ +++RGID +R+ + A V R+KI I+DE
Sbjct: 105 NPDSESDVAQAIDSGEDVDVIEIDGASNRGIDEIRS---LRANVGVRPSRSRYKIYIIDE 161
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T A AL +T+E +F + EKI + SRC ++ + +I+ ++
Sbjct: 162 VHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESDKIVQRL 221
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPHPM 876
EI E+ + +E + + A G +R + + L+ GH++ D+V +
Sbjct: 222 REIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLTADHVHTMLGTADDQ 281
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAA 969
+ ++ EA +D A I + G A
Sbjct: 282 RLHRLAEAMADRDASAALSQIDEAIAAGVDA 312
>UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Acidobacteria bacterium Ellin345|Rep: DNA
polymerase III, subunits gamma and tau - Acidobacteria
bacterium (strain Ellin345)
Length = 632
Score = 72.9 bits (171), Expect = 1e-11
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 23/232 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F ++G + L + A I +G G+GKTT LA AL
Sbjct: 11 RPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNCQSADHP 70
Query: 373 ----LGV--SFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
GV S K+ V+E++A+ +RGID +R +++ A+ + R KI IL
Sbjct: 71 VSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIR-ELREAARYRPARD--RFKIYIL 127
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DEA +TD A AL +T+E F +A E I + I+SRC + + I+
Sbjct: 128 DEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKFDDIVL 187
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGH-ISPDNV 846
++ +I KE + ++ ++ + G +R AL+ + G+ + D+V
Sbjct: 188 QLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDV 239
>UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Firmicutes|Rep: DNA polymerase III, subunits
gamma and tau - Clostridium cellulolyticum H10
Length = 280
Score = 72.9 bits (171), Expect = 1e-11
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 23/232 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP F+ +V E V + K+G A + G G GKTT ARA+ ++ KD
Sbjct: 11 RPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFARAINCINPKDG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
V+E++A+++ +D VR + +V P R+K+ I+
Sbjct: 71 NPCNECEVCRGILDESILDVVEIDAASNNSVDNVRE-----IRDEVVYAPSQARYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA AL +T+E F LA + K+ I SRC + +++ A I
Sbjct: 126 DEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITPAGIAE 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNV 846
+V I ++ ++G + A G LR AL+ L Q A+G I+ NV
Sbjct: 186 RVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGSTTITYQNV 237
>UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;
n=1; Tetrahymena thermophila SB210|Rep: Replication
factor C subunit, putative - Tetrahymena thermophila
SB210
Length = 358
Score = 72.9 bits (171), Expect = 1e-11
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 30/226 (13%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS----- 384
RP++ D + + +L A + + P++++ GP G GK T + + + G
Sbjct: 10 RPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEVYGNGVHKVK 69
Query: 385 -----FK-----DAVLELNA-SNDRGIDVV----RNKIKMFAQQKVT-------LPPG-- 492
FK +E+N S++ +DV N+ + Q+ + L P
Sbjct: 70 SEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLIKEVASTHQLDPNSQ 129
Query: 493 -RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSR 669
R K++I++E D +T AQ +LRRTME Y R L A N ++I P++SRC ++R +
Sbjct: 130 RRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRCLLIRVAA 189
Query: 670 LSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 807
S+ + A V ++ N++NL+ ++ + +LR+ + NLQ+
Sbjct: 190 PSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQT 235
>UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4;
Thermotogaceae|Rep: UPF0189 protein TM_0508 - Thermotoga
maritima
Length = 599
Score = 72.9 bits (171), Expect = 1e-11
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 3/204 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFA---KTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 390
RP+ F+ VG + + KTGN + I+ GPPG GKT+ L R F
Sbjct: 13 RPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRY-----FN 67
Query: 391 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 570
V+ L+ S G+ ++N +K Q + G+ ++ LDE + Q L +E
Sbjct: 68 GEVVYLS-STVHGVSEIKNVLKRGEQLRKY---GKKLLLFLDEIHRLNKNQQMVLVSHVE 123
Query: 571 LYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVS 750
N S I+ + SRC +L + +LSD ++ + + N+ E
Sbjct: 124 RGDIVLVATTTENPSFVIVPALLSRCRILYFKKLSDEDLMKILKKATEVLNIDLEESVEK 183
Query: 751 AVVFTAQGDLRSALNNLQSTAQGF 822
A+V ++GD R LN L+ Q F
Sbjct: 184 AIVRHSEGDARKLLNTLEIVHQAF 207
>UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1;
Methylophilales bacterium HTCC2181|Rep: DNA-directed DNA
polymerase - Methylophilales bacterium HTCC2181
Length = 544
Score = 72.5 bits (170), Expect = 2e-11
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGVSF 387
RP++FD ++G E V +A + + G G+GKTT LA++L G+S
Sbjct: 11 RPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNCEQGISS 70
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
K ++EL+A+++ G+D N I + + GR K+ I+DE
Sbjct: 71 KPCLTCSACQEIDVGRYVDLIELDAASNTGVD---NMIDLLENAQYAPSSGRFKVYIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A A+ +T+E +F LA +K+ + SRC +++ I + +
Sbjct: 128 VHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSRCLQFNLKQMTTENIASHL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNV 846
I +E + + + A G +R AL+ L Q+ A IS + V
Sbjct: 188 TSILTEEKIGSESGAIQIIAKAANGSMRDALSILDQAIAYSSEKISTEKV 237
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 72.5 bits (170), Expect = 2e-11
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 20/210 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV----- 381
RPQTFD +VG + V L A+ A + GP G GKT+T A+AL
Sbjct: 14 RPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCTDGPKA 73
Query: 382 ----------SFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
S D V+E++ +++ +D +R+ + + G+ KI I+DE
Sbjct: 74 DFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRD---LRDDVRYAPTQGKFKIYIIDE 130
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A AL +T+E +F A + +K++ I SRC + D I+ ++
Sbjct: 131 VHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDLIIKRL 190
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSA 789
+I E ++ T E ++ + A G +R A
Sbjct: 191 AQIGADEKINATPEALACIARMADGGMRDA 220
>UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1;
Pectobacterium atrosepticum|Rep: DNA polymerase III
subunit tau - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 691
Score = 72.1 bits (169), Expect = 3e-11
Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 21/275 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQTF +VG E ++ LA G + + +G GVGKTT LA+ L GV+
Sbjct: 11 RPQTFTQVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCEQGVTA 70
Query: 388 KDAVLELNA---SNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
N R +D++ R K++ V P GR K+ ++DE
Sbjct: 71 TPCGQCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + +K+ I SRC L QI A + ++
Sbjct: 131 LSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRAHLEQV 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKV---CDEPHPM 876
ENL+ + + A G LR AL+ Q+ A G G ++ +V ++ D+ P+
Sbjct: 191 LQAENLASEPRALQLLARAADGSLRDALSLTDQAIAMGQGQVTTASVSQMLGTLDDEQPL 250
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIV 981
++EA K D + ++ ++ G E ++
Sbjct: 251 A---LIEALAKGDGGQVMSLLDQVAARGVDWESLL 282
>UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma and
tau subunits; n=2; Geobacillus|Rep: DNA-directed DNA
polymerase III gamma and tau subunits - Geobacillus
kaustophilus
Length = 559
Score = 72.1 bits (169), Expect = 3e-11
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F +VG E L + + + + +GP G GKT+ A+A+
Sbjct: 11 RPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCEQAPAA 70
Query: 373 ---------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
LG++ VLE++A+++ +D +R+ ++KV P R+K+ I+
Sbjct: 71 EPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRD-----IREKVKFAPTSARYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ GA AL +T+E F LA KI I SRC + R+ I++
Sbjct: 126 DEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPAIVS 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPH 870
++ + + + + ++E +SA+ A G +R AL+ L Q+ + G + D+V +
Sbjct: 186 RLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTGAAS 245
Query: 871 PMVVRQMLEAXTKQD 915
+ +EA ++D
Sbjct: 246 FAALSSFIEAIHRKD 260
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 72.1 bits (169), Expect = 3e-11
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 23/266 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTT-------TILC------ 357
RP TF+ + G + V+ L K + + G G GKTT T+ C
Sbjct: 11 RPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAKTVNCEHPIDG 70
Query: 358 -------LARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ +A+ S + V+E++A+++ G+D +R ++ + K + G +K+ I+D
Sbjct: 71 NPCNECAMCKAIQSQSSMN-VIEIDAASNNGVDNIREIVE---EVKYSPTEGNYKVYIID 126
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E ++ GA AL +T+E S F LA KI I SRC + R++ +I +
Sbjct: 127 EVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTIDEITKR 186
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGH-ISPDNVFKVCDEPH 870
+ I KE + E+ + V A G R AL+ L Q A FG ++ DNV
Sbjct: 187 LRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYFGQSLTYDNVLDALGTVD 246
Query: 871 PMVVRQMLEAXTKQDIHEAYKVIAKL 948
V ++L K + + ++ +L
Sbjct: 247 IEVFARLLRYIRKGSVTDCVAILEEL 272
>UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Marinomonas sp. MED121|Rep: DNA polymerase III
subunits gamma and tau - Marinomonas sp. MED121
Length = 823
Score = 72.1 bits (169), Expect = 3e-11
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 19/262 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALL----GVS 384
RPQ F + G + + L K + + G GVGKTT A+ L G+S
Sbjct: 11 RPQNFIELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAKCLNCETNGIS 70
Query: 385 FKDAVLE---LNASNDRGIDVV------RNKIK----MFAQQKVTLPPGRHKIVILDEAD 525
+ + + R +D++ R K++ + + T GR K+ ++DE
Sbjct: 71 PEPCGTCGSCVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGRFKVYLIDEVH 130
Query: 526 SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 705
++ + AL +T+E + +F LA + +K+ I SRC +S +++ + +
Sbjct: 131 MLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMSPGRVVNYLEK 190
Query: 706 ICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVV 882
+ E LSY E G+ + A G +R AL+ Q+ A G GHIS +V + + V
Sbjct: 191 VLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAFGNGHISETDVTSMLGLVNQAQV 250
Query: 883 RQMLEAXTKQDIHEAYKVIAKL 948
+L+A + D K++ L
Sbjct: 251 VGLLDAIVQSDAANLLKLVNDL 272
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 72.1 bits (169), Expect = 3e-11
Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 27/267 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL-------- 375
RP+ + N + +L A + P+III+GP G GK T + L L
Sbjct: 8 RPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDEDVNILR 67
Query: 376 -------GVSFKDAV--LELN-------ASNDRGIDVVRNKIKMFAQQK---VTLPPGRH 498
G S K + L+ N S + +++ IK +A K + +
Sbjct: 68 KRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIFKTKRKF 127
Query: 499 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSD 678
K +++ +++ + +Q ALRRTME Y+ T RF + NN KI++P++SRC +
Sbjct: 128 KTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLPTI 187
Query: 679 AQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVC 858
I V I EN+ + ++ +L++A+ L +G + SP F
Sbjct: 188 ENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFL--NCKGL-NCSP---FIAL 241
Query: 859 DEPHPMVVRQMLEAXTKQDIHEAYKVI 939
DE +VV +LE T ++I + + I
Sbjct: 242 DEAFDLVVESILECRTGKNIFKIHNDI 268
>UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1;
Aeropyrum pernix|Rep: Replication factor C large subunit
- Aeropyrum pernix
Length = 479
Score = 72.1 bits (169), Expect = 3e-11
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 9/214 (4%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILCLARALLGV 381
RP+ + +V + L + K G P+ ++ GPPGVGKT+ + +A
Sbjct: 17 RPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIAS----- 71
Query: 382 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA-LR 558
F ++ELNAS+ R + + ++++ G +++LDE D + +
Sbjct: 72 EFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRG--VVILLDEVDGINPREDAGGIE 129
Query: 559 RTMELYSSTTR-FALAANNSEK-IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
+ + +T + AN+ K + P++ ++ + L+ I+A + IC E +
Sbjct: 130 ALLSVIKTTENPIVMTANDPWKDFLRPLREVSLMVEFRPLTLTHIVAVLQRICEAERIEC 189
Query: 733 TEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 834
E + + ++GDLRSA+N+LQ+ A+G+G ++
Sbjct: 190 EREALRYIAERSEGDLRSAINDLQAVAEGYGRVT 223
>UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4;
Enterobacteriaceae|Rep: DNA polymerase III subunit gamma
- Buchnera aphidicola subsp. Schizaphis graminum
Length = 363
Score = 72.1 bits (169), Expect = 3e-11
Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 18/277 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGV-S 384
RPQ+F I+G + V ++ G + +++G GVGKTT +A++L +G+ S
Sbjct: 11 RPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNCEIGITS 70
Query: 385 FKDAVLELNASNDRGIDVVRNKIKMFAQQKV------------TLPPGRHKIVILDEADS 528
+ ++GI + +I ++ KV T R K+ ++DE
Sbjct: 71 LPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + EKI + I+SRC + + LS+ I + I
Sbjct: 131 LSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFNFLKHI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEPHPMVVR 885
K ++ EE + + A G +R ALN L+ +I+ N ++ P+
Sbjct: 191 LKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLGIPNKKHAF 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFR 996
+ + +QD + ++ K+ KIG ++I+ + R
Sbjct: 251 LLTKFLLEQDSKKMMCLLNKISKIGLEWQNILIEMMR 287
>UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Micrococcineae|Rep: DNA polymerase III,
subunits gamma and tau - Arthrobacter sp. (strain FB24)
Length = 1078
Score = 71.7 bits (168), Expect = 3e-11
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 26/283 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP +F ++G E L + + + +GP G GKTT+ LAR L
Sbjct: 12 RPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCAEGPTD 71
Query: 373 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 507
G S V+E++A++ G+D R+ +++ T P R+KI
Sbjct: 72 TPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARD-----LRERATYAPVRDRYKIF 126
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DEA +T AL + +E +F A +K+I I+SR + + +
Sbjct: 127 IIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEPL 186
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVC--D 861
+A + +CN+EN+ +S V+ G +R +L+ L G G D V
Sbjct: 187 MAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPTGLDYELAVALLG 246
Query: 862 EPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
H ++ ++EA D ++ + ++ + G+ V ++
Sbjct: 247 YTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDL 289
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 71.3 bits (167), Expect = 4e-11
Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 26/286 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEX---TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 372
RP+ FD I G + T+ + F K +A + +GP G GKT+ A AL
Sbjct: 11 RPKNFDEIKGQDHIVTTLKNILNFDKLSHA--YLFSGPRGTGKTSVAKIFAAALNCEHEI 68
Query: 373 -------LGVSFKD---AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILD 516
L V D ++E++A+++ G+D +R ++KV P ++K+ I+D
Sbjct: 69 QKEKICNLCVENLDNNLDIIEIDAASNNGVDEIRE-----LREKVKYSPSQYKYKVYIID 123
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
EA +T A AL +T+E F LA + +KI + SR + R++ + +
Sbjct: 124 EAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRITLPILEKQ 183
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVF-KVCDEPHP 873
+ E+ KEN+ + ++ + A+G LR AL S A S +N+ K DE
Sbjct: 184 LQEVLTKENIRINKNALTLIAKMAEGGLRDAL----SIADQISIFSNNNITEKEVDEVFS 239
Query: 874 MVVRQ----MLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
+V + L K+D + I + G E +V N+ +
Sbjct: 240 LVSIEDQIYFLNLIYKKDTTTVLRTINNYIESGINIEKLVINLIDI 285
>UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Pseudoalteromonas atlantica T6c|Rep: DNA
polymerase III, subunits gamma and tau -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 914
Score = 71.3 bits (167), Expect = 4e-11
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 18/258 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP F +VG E V+ ++ + + G GVGKTT +++L LG+
Sbjct: 11 RPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSKSLNCELGMGS 70
Query: 388 K-----DAVLELNASNDRG---IDVV-RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
K +E+ N ID R K++ + V P GR+K+ ++DE
Sbjct: 71 KPCGKCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSRGRYKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + +K+ I SRC LS AQI ++ +
Sbjct: 131 LSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKALSRAQIAQQLQHV 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVVR 885
+E L E ++ + AQG +R AL+ + Q+ AQG G++S V + V
Sbjct: 191 FAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAIAQGNGNVSLSIVTDMLGLMDKTQVL 250
Query: 886 QMLEAXTKQDIHEAYKVI 939
++L A + ++++
Sbjct: 251 KLLNAVLNKQNESVFELV 268
>UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau;
n=16; Bacillaceae|Rep: DNA polymerase III subunit
gamma/tau - Bacillus subtilis
Length = 563
Score = 71.3 bits (167), Expect = 4e-11
Identities = 67/272 (24%), Positives = 123/272 (45%), Gaps = 25/272 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F+ +VG E L + + + +GP G GKT+ A+A+
Sbjct: 11 RPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPVD 70
Query: 373 ---------LGV---SFKDAVLELNASNDRGIDVVRN---KIKMFAQQKVTLPPGRHKIV 507
G+ S D V+E++A+++ G+D +R+ K+K FA VT +K+
Sbjct: 71 EPCNECAACKGITNGSISD-VIEIDAASNNGVDEIRDIRDKVK-FAPSAVT-----YKVY 123
Query: 508 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
I+DE ++ GA AL +T+E F LA KI I SRC + R++ I
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAI 183
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHI-SPDNVFKVCDE 864
+ ++ +I + E L E + + A G +R AL+ L G I ++ +
Sbjct: 184 VGRMNKIVDAEQLQVEEGSLEIIASAAHGGMRDALSLLDQAISFSGDILKVEDALLITGA 243
Query: 865 PHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ + ++ ++ +++ +A + + +L + G
Sbjct: 244 VSQLYIGKLAKSLHDKNVSDALETLNELLQQG 275
>UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND TAU;
n=4; Epsilonproteobacteria|Rep: DNA POLYMERASE III
SUBUNITS GAMMA AND TAU - Wolinella succinogenes
Length = 544
Score = 70.9 bits (166), Expect = 6e-11
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 1/174 (0%)
Frame = +1
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
++E++A++ R ID +R+ I+ Q K GR KI I+DE +T A AL +T+E
Sbjct: 89 IIEMDAASSRKIDDIRDLIE---QTKYHPAMGRFKIFIIDEVHMLTKEAFNALLKTLEEP 145
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
+F LA + K+ I SR R+ +++ ++A + +I + EN+ + E + +
Sbjct: 146 PPYVKFILATTDPLKLPATILSRTQHFRFKKIAHRDVIAHIQKILHLENVPFEPEALEMI 205
Query: 757 VFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQD 915
+ G LR L L QS G+++P V ++ P ++ ++ +A D
Sbjct: 206 ARSGGGSLRDTLTLLDQSIIFCKGNLTPALVAQMLGLVDPELLERLFDAIFSHD 259
>UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase III
subunits gamma/tau dnaX; n=1; Candidatus Protochlamydia
amoebophila UWE25|Rep: Probable DNA-directed DNA
polymerase III subunits gamma/tau dnaX - Protochlamydia
amoebophila (strain UWE25)
Length = 522
Score = 70.9 bits (166), Expect = 6e-11
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-LGVSFKD 393
RPQTF + G E V+ L K A + G G GKTT A+A+ S +D
Sbjct: 12 RPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFAKAINCQNSTED 71
Query: 394 A-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
VLE++ ++ RGI+ +R +I T G++K+ I+D
Sbjct: 72 FEPCNQCTSCREITSGSSLDVLEIDGASHRGIEDIR-QINETVGYAAT--SGQYKVYIID 128
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A AL +T+E +F A + K++ I SRC SR+ +QI+ K
Sbjct: 129 EVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRIPLSQIMIK 188
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSA 789
+ I ++ + EE + + + A+G LR A
Sbjct: 189 LKLIADQLEIDVEEEALQLLAYKAEGGLRDA 219
>UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=7; Borrelia burgdorferi group|Rep: DNA polymerase
III, subunits gamma and tau - Borrelia garinii
Length = 560
Score = 70.9 bits (166), Expect = 6e-11
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP+ F+ + G + V L + N I +GP GVGKT++ AR L
Sbjct: 12 RPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARC-LNCKNGPT 70
Query: 397 VL---ELN----ASNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEAD 525
V+ E N ND +DV+ ++ Q +++ PP +++I I+DE
Sbjct: 71 VMPCGECNNCKSIENDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRIYIIDEVH 130
Query: 526 SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 705
+++ A AL +T+E + F A S K+ E I+SRC + LS +I + +
Sbjct: 131 MLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNMLKK 190
Query: 706 ICNKENLSYTEEGVSAVVFTAQGDLRSA 789
+C ++++ Y +E + + + + G +R A
Sbjct: 191 VCFEDHIKYEDEALKWIAYKSSGSVRDA 218
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 70.9 bits (166), Expect = 6e-11
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 22/234 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RP+ F +VG + L ++ A + +GP G GKTTT LA+AL
Sbjct: 11 RPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCEHREGV 70
Query: 373 ---------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
L + A V E++A+++RGID +R+ + KV L G ++K+ I+
Sbjct: 71 EPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRD-----LRDKVRLSAGESKYKVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +T A AL +T+E F LA KI I SR + R+ QI +
Sbjct: 126 DEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHS 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKV 855
+ ++C E + + ++G LR AL+ L G + + V++V
Sbjct: 186 HLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQV 239
>UniRef50_A4C5P9 Cluster: Putative DnaX, DNA polymerase III, gamma/tau
subunits; n=1; Pseudoalteromonas tunicata D2|Rep:
Putative DnaX, DNA polymerase III, gamma/tau subunits -
Pseudoalteromonas tunicata D2
Length = 820
Score = 70.9 bits (166), Expect = 6e-11
Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 21/283 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL---LGVS 384
RPQ F +VG E V + V A T + + G GVGKTT A++L LG++
Sbjct: 11 RPQNFHQLVGQEH-VKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGIT 69
Query: 385 FK-----DAVLELNASNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDE 519
A L++ A R ID++ R K++ + V P GR+K+ ++DE
Sbjct: 70 ATPCGQCSACLDIEAG--RYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ + AL +T+E +F LA + +K+ I SRC S LS QI ++
Sbjct: 128 VHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLSALSRPQIEQQL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPM 876
+ +E + + ++ + A G +R AL+ Q+ AQ G ++ V +
Sbjct: 188 SFVLTEEQIHFEVASLALLAKAADGSMRDALSLTDQAIAQTNGQVNESQVKSMLGLMDAS 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVAN 1005
+++L + +D E ++A L K A+ ++ ++ + +
Sbjct: 248 WAKRLLVSIVDKDGAELLSLVADLVKQNANAKSVLDDLLSLTH 290
>UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; sulfur-oxidizing symbionts|Rep: DNA polymerase
III, subunits gamma and tau - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 529
Score = 70.9 bits (166), Expect = 6e-11
Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 21/268 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGVSF 387
RP +F +VG T L N + + G GVGKTT LA+++ G+S
Sbjct: 13 RPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARILAKSINCEQGISS 72
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
K ++EL+A++ G+D +R+ ++ AQ + R+KI ++DE
Sbjct: 73 KPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMRDILEN-AQYMPS--KNRYKIYLIDE 129
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ + AL +T+E +F L + +K+ + SRC +L+ +IL ++
Sbjct: 130 VHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTLQQLTHDEILEQL 189
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
I N E LSY E + + G +R AL+ L QS + G G ++ ++ + H
Sbjct: 190 KFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISYGKGTVTNADIKAMLGLVHHD 249
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ ++ QD I L + G
Sbjct: 250 DIIKLTTHLFSQDAKAVIDFIKDLSRRG 277
>UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Porphyromonas gingivalis|Rep: DNA
polymerase III, gamma and tau subunits - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 602
Score = 70.5 bits (165), Expect = 8e-11
Identities = 71/281 (25%), Positives = 124/281 (44%), Gaps = 24/281 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEX---TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV--- 381
RP +F +VG E T+ V KT +A + GP GVGKT+ ARA+ +
Sbjct: 13 RPDSFASMVGQEALSATLKSSIVQQKTAHA--YLFCGPRGVGKTSCARIFARAINCLERL 70
Query: 382 -------------SFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 510
+F + + EL+A+++ +D +R I+ Q V G++KI I
Sbjct: 71 PDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIE---QANVPPQIGKYKIYI 127
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
+DE ++ A A +T+E S F LA KI+ I SRC + + R+ A+I
Sbjct: 128 IDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPARIE 187
Query: 691 AKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQ-GFGHISPDNVFKVCDEP 867
+ + + E + E ++ + A G +R AL+ A+ G+I+ N + +
Sbjct: 188 QHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANTIENLNIL 247
Query: 868 HPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNI 990
++ + + D V+ +L G+ + IVS +
Sbjct: 248 DYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGL 288
>UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits;
n=2; Mycoplasma|Rep: DNA polymerase III gamma-tau
subunits - Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC27343 / NCTC 10154)
Length = 669
Score = 70.5 bits (165), Expect = 8e-11
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Frame = +1
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMEL 573
++E++A+++ G+D +R +IK TLP ++K+ I+DE +T A AL +T+E
Sbjct: 92 IIEIDAASNNGVDEIR-EIKNSVS---TLPINSKYKVYIIDEVHMLTKQAFNALLKTLEE 147
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSA 753
T F LA KI + I SRC + ++++ + ++ I N+EN +E +
Sbjct: 148 PPVYTIFILATTEFNKIPQTILSRCQIFNFTKIDKNSLKNRLQYIVNQENYQIEKEVLDE 207
Query: 754 VVFTAQGDLRSALNNLQ 804
+ + ++G LR A+N L+
Sbjct: 208 IFYLSEGSLRDAINILE 224
>UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Mariprofundus ferrooxydans PV-1|Rep: DNA polymerase
III subunits gamma and tau - Mariprofundus ferrooxydans
PV-1
Length = 561
Score = 70.5 bits (165), Expect = 8e-11
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RPQ F +VG + V L +GN A ++ G GVGKTT +A A +D
Sbjct: 11 RPQQFSDLVGQDVVVRTLKNALASGNLAHAYLLCGIRGVGKTTIARLMAMAANCEQPEDG 70
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVIL 513
V E++A++ G+D VR + V PP + ++ I+
Sbjct: 71 EPCGRCKACRGIADGSNLDVQEMDAASHTGVDDVREIL-----DGVRYPPSSLKTRVYII 125
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DEA ++ A AL +T+E + F LA SEK+ ++SRC RL ++I A
Sbjct: 126 DEAHMLSKSAFNALLKTLEEPPAHVLFILATTESEKLPVTVRSRCQRFDLRRLGLSEIAA 185
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 795
+ + +E++S + +A+ A G +R AL+
Sbjct: 186 YLTHVFEQESISADSDAAAAIARAADGSVRDALS 219
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 70.5 bits (165), Expect = 8e-11
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 4/213 (1%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKD 393
RPQ +VGN V + +A+ + +I+ G PG GKT++ LA +
Sbjct: 8 RPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDM-----NW 62
Query: 394 AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA-LRRTME 570
V+ELNAS+ R ++ +L K+++LDEAD++ A + + +E
Sbjct: 63 EVVELNASDQR-TKAALERVAGAGSTTASLSGASRKLILLDEADNLHGQADRGGAKAIVE 121
Query: 571 LYSSTTR-FALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGV 747
+ ++ + L AN+ + +++ +++ L I+ ++ +IC E ++ +
Sbjct: 122 IIAAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGVACDPAAL 181
Query: 748 SAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+ A GD+R+A+N L + A G H++ +V
Sbjct: 182 DDIANRAGGDMRAAVNMLYAAAIGKEHLAAGDV 214
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 70.1 bits (164), Expect = 1e-10
Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 21/261 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F+ +VG + V L + A + +GP GVGKT+ LA+A+
Sbjct: 11 RPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAINCEQGPAG 70
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ V E++ +++RGID +R + V+ R+K+ I+DE
Sbjct: 71 TPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSC---RYKVYIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T A AL +T+E F A + K+ I SRC + RLS QI ++
Sbjct: 128 VHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSLRQIAEQL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEPHPM 876
+I E + ++ G++ + G +R + + G I + V ++
Sbjct: 188 RKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAVEELLGRTDRR 247
Query: 877 VVRQMLEAXTKQDIHEAYKVI 939
+ Q+ EA ++D + +++
Sbjct: 248 FLFQLSEAVLRRDAGQCLRIV 268
>UniRef50_Q1ZGI5 Cluster: DNA polymerase III subunits gamma and tau;
n=2; Psychromonas|Rep: DNA polymerase III subunits gamma
and tau - Psychromonas sp. CNPT3
Length = 784
Score = 70.1 bits (164), Expect = 1e-10
Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 21/268 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP F ++G E ++ L+ + + +G GVGKT+ LA++L GV+
Sbjct: 11 RPHNFSEVIGQEHVLTALSNGLTQNRVHHAYLFSGTRGVGKTSIARILAKSLNCEQGVTA 70
Query: 388 K-----------DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
DA +LE++A++ +D R + Q K T+ GR+K+ ++DE
Sbjct: 71 TPCGQCEFCLAIDAGHFVDLLEIDAASRTKVDDTREMLDN-VQYKPTV--GRYKVYLIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ + AL +T+E +F LA + +K+ + SRC L QI ++
Sbjct: 128 VHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQFHLKALLPEQIEKQL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPM 876
I ++E ++ ++A+ A G +R AL+ Q+ A G GHI V K+
Sbjct: 188 RYILDQEQATFDGASLTAIANAADGSMRDALSLTDQALAFGSGHIEYQAVLKMLGTIDNH 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ +L D+ + + I + +G
Sbjct: 248 HLHYLLHFIASGDVEKVFAKIQEFVHLG 275
>UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Desulfuromonadales|Rep: DNA polymerase III,
subunits gamma and tau - Desulfuromonas acetoxidans DSM
684
Length = 597
Score = 70.1 bits (164), Expect = 1e-10
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 21/270 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALL---GVSF 387
RPQTF +VG E LA +G + + G GVGKT+ LA+AL G S
Sbjct: 11 RPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAKALNCENGPSA 70
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
+ V E++ +++ G+D VR + R+KI I+DE
Sbjct: 71 EPCNQCQHCEEISSGHSVDVFEIDGASNTGVDDVRELRETLRYMPSQC---RYKIFIIDE 127
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A AL +T+E +F A KI I SRC + ++ +++A++
Sbjct: 128 VHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSRCQRFDFRKIPAPKVVAQL 187
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPM 876
I + EN++ ++ ++ + G +R +L+ L Q A ++ ++V +
Sbjct: 188 RRIVDAENITISDRALALIAQRGGGSMRDSLSTLDQVVAFCSEQVADEDVQGLLGMVDRR 247
Query: 877 VVRQMLEAXTKQDIHEAYKVIAKLCKIGYA 966
++ LE +QD V+ ++ +G++
Sbjct: 248 LLFDALEGCMRQDCSMVLNVVRRVDDLGHS 277
>UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Eubacterium ventriosum ATCC 27560
Length = 541
Score = 70.1 bits (164), Expect = 1e-10
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 22/269 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
RP TFD + G + V L + + G G GKT+ A+A+
Sbjct: 26 RPSTFDQVKGQDHIVQTLKNQINANRIGHAYLFCGTRGTGKTSVAKIFAKAVNCEHPVDG 85
Query: 373 ---------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
G++ A V+E++A+++ G+D +R +I+ Q + G++ + I+DE
Sbjct: 86 SPCNECETCRGITNGSAMNVIEIDAASNNGVDNIR-QIRDEIQYSPS--SGKYTVYIIDE 142
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ GA AL +T+E + F LA KI I SRC + R+S I A++
Sbjct: 143 VHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRCQRYDFKRISIDTIAARL 202
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGH-ISPDNVFKVCDEPHP 873
E+ KE++ ++ + V A G +R AL+ L Q A G ++ DNV V
Sbjct: 203 SELMEKESIEVEDKAIRYVAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLDVLGAVDN 262
Query: 874 MVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ ++ D+ + ++ ++ G
Sbjct: 263 EIFSRLTRRVIDSDVTTSLNILDEIIMQG 291
>UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TAU;
n=1; Mycoplasma agalactiae|Rep: DNA polymerase III
subunit gamma and TAU - Mycoplasma agalactiae
Length = 614
Score = 70.1 bits (164), Expect = 1e-10
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKD- 393
RP+ FD + G + + L + + + GP GVGKT+ A + D
Sbjct: 11 RPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFANLINCYHNNDD 70
Query: 394 ----------------AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD 525
++E++A+++ G+D +R +++ Q ++ G +KI I+DE
Sbjct: 71 YSKLCQICEENGSNTIDIIEMDAASNNGVDSIR-ELRDKIQHLPSV--GNYKIYIIDEVH 127
Query: 526 SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIE 705
++ GA AL +T+E + F A + +KI I SR + R+S+ ++ ++
Sbjct: 128 MLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRMSNDTLVKQIKS 187
Query: 706 ICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNV 846
I +E + Y E + + A G +R AL+ + Q+ A G G+I +V
Sbjct: 188 ILEQEGIKYDAEALPYIARLAVGSMRDALSIIDQANAYGNGYIKFSDV 235
>UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Idiomarina baltica OS145|Rep: DNA polymerase III,
gamma/tau subunits - Idiomarina baltica OS145
Length = 640
Score = 70.1 bits (164), Expect = 1e-10
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP FD +VG + + L + + + G GVGKTT LA+AL GVS
Sbjct: 11 RPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAKALNCERGVSA 70
Query: 388 K---DAVLELNASNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
+ + R +D++ R K++ + V P GR+K+ ++DE
Sbjct: 71 RPCGECPSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTRGRYKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + +K+ + SRC L QI+ ++ +
Sbjct: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFNLRALDREQIVGQLEYV 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMVVR 885
EN+ + + ++ + +A+G +R AL+ Q+ AQG G + ++V ++ V
Sbjct: 191 LENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIAQGQGKVQVESVQRMLGHLADAHVH 250
Query: 886 QMLEAXTKQDIHEAYKVIAKL 948
+L+A D ++ +L
Sbjct: 251 PLLDALASGDSGSVFEKFDEL 271
>UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2;
Candidatus Blochmannia|Rep: DNA polymerase III subunit
gamma - Blochmannia floridanus
Length = 541
Score = 69.7 bits (163), Expect = 1e-10
Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 6/181 (3%)
Frame = +1
Query: 490 GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSR 669
G+ K+ ++DE ++ + AL +T+E +F L +K+ E I SRC +
Sbjct: 118 GKFKVYLIDEVHMLSRHSFNALLKTLEEPPKHVKFILVTTEYQKLPETILSRCLQFYFKP 177
Query: 670 LSDAQILAKVIEICNKENLSY-TEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDN 843
L+ QI+ ++ ICN+EN++ TE + + + A+G +R ALN L Q+ G +I+ D
Sbjct: 178 LNIIQIVTQLKYICNQENINIDTENSLEFLAYAARGSIRDALNLLEQAMILGKNNITIDV 237
Query: 844 VFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIG----YAAEDIVSNIFRVANFR 1011
+ + H ++E+ T +I++ I +G Y E+I+ + ++A ++
Sbjct: 238 INSMLGLLHIEHALSLIESLTNGNINKIMNQIDNYSILGINWDYLFEEILIVLQKIAIYQ 297
Query: 1012 Y 1014
+
Sbjct: 298 F 298
>UniRef50_Q31I98 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Thiomicrospira crunogena XCL-2|Rep: DNA polymerase
III subunit gamma and tau - Thiomicrospira crunogena
(strain XCL-2)
Length = 696
Score = 69.7 bits (163), Expect = 1e-10
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 18/265 (6%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ F +VG + L+ + + G GVGKTT ++AL G++
Sbjct: 11 RPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSKALNCEQGITS 70
Query: 388 KDA-VLELNASNDRG--IDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
K V S D G +D++ + K++ + + V P GR+K+ ++DE
Sbjct: 71 KPCGVCSTCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYAPVQGRYKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + K+ + SRC RL+ QI + I
Sbjct: 131 LSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSRCLQFNLMRLTLPQIQQHLAYI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVR 885
+E +++ E ++ + +A G R +L+ L Q+ A G G + D V +
Sbjct: 191 LQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGGGKVQYDAVQAMLGLVDQQFTL 250
Query: 886 QMLEAXTKQDIHEAYKVIAKLCKIG 960
+L A + E +VI +L +G
Sbjct: 251 NILSALANESADELKEVIQQLALMG 275
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 69.7 bits (163), Expect = 1e-10
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL-------- 372
RPQ F +VG E V L +G P ++ +G GVGKTT LA+A+
Sbjct: 12 RPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAKAINCEKGPTV 71
Query: 373 -----------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVIL 513
+ VLE++ ++ G++ +R+ ++ + P R ++ I+
Sbjct: 72 DPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRS-----LREGIRYLPFRSRSRVYII 126
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE ++ A AL +T+E F A KI + I SRC R+ L +I A
Sbjct: 127 DEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQHFRFRSLGVPEITA 186
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
K+ I +E+LS+ ++ + + G LR AL+ L
Sbjct: 187 KLENIVRQESLSFPRAILNLIARASGGSLRDALSLL 222
>UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Mesoplasma florum|Rep: DNA polymerase III gamma and
tau subunits - Mesoplasma florum (Acholeplasma florum)
Length = 631
Score = 69.3 bits (162), Expect = 2e-10
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFKDA 396
RP F I G++ V L K + + + AG G GKT+ LA+++ ++ KD
Sbjct: 12 RPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVNCLNIKDG 71
Query: 397 -------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
++E++A+++ G+D +R +IK + G++KI I+DE
Sbjct: 72 LACEVCESCIASNEQRNPDIIEMDAASNNGVDEIR-EIKNNINSLPFI--GKYKIYIIDE 128
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
+T A AL +T+E F LA KI I SRC + + ++ ++ ++
Sbjct: 129 VHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISLMNRL 188
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
IC E + + + ++G LR A N ++
Sbjct: 189 SFICENEGYKIDKAVLEEIAIISEGSLRDASNVIE 223
>UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase III
gamma and tau subunits - Planctomyces maris DSM 8797
Length = 484
Score = 69.3 bits (162), Expect = 2e-10
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 22/253 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILCLARAL------- 372
RPQ F +VG + V++ A G+ A + G GVGKT+ LA+AL
Sbjct: 16 RPQNFSEVVG-QGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAKALNCPHTQD 74
Query: 373 ------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 516
+ V VLE++ +++RGID +R+ + A V ++KI I+D
Sbjct: 75 GIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRS---LRANVNVRSMRSKYKIYIID 131
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A AL +T+E +F K+ + I SRC + + + I +
Sbjct: 132 EVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEENSICDR 191
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHP 873
+ +I E +S ++ + V A G +R + + Q + G H++ ++V ++
Sbjct: 192 LKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRILGTASD 251
Query: 874 MVVRQMLEAXTKQ 912
+ ++++A +Q
Sbjct: 252 ERLIELIDALIEQ 264
>UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Solibacter usitatus Ellin6076|Rep: DNA
polymerase III, subunits gamma and tau - Solibacter
usitatus (strain Ellin6076)
Length = 568
Score = 68.9 bits (161), Expect = 2e-10
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ+F ++ E + L A+ A I +G G GKTT LAR L
Sbjct: 10 RPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQGPTA 69
Query: 373 --LGV--SFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
GV S K+ V+E++A+++RGI+ +R + Q R+KI I+DE
Sbjct: 70 TPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPAR---DRYKIFIIDE 126
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
A +T+ A AL +T+E F L S KI I SRC + + +++ ++
Sbjct: 127 AHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQELVDRM 186
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
IC +E + E ++ + +G +R +L+ L
Sbjct: 187 SWICGQEGIEADAEALAVLAAAGEGSVRDSLSAL 220
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 68.9 bits (161), Expect = 2e-10
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +1
Query: 496 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLS 675
+K+V+L+E D M+ AQ ALRRTME Y +T R L N++ ++I P++SRC +R + S
Sbjct: 132 YKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHS 191
Query: 676 DAQILAKVIEICNKENLSYTEEG-VSAVVFTAQGDLRSALNNLQSTA 813
+ V +C E ++++ + G+LR L L+++A
Sbjct: 192 KDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASA 238
>UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1;
Methanopyrus kandleri|Rep: Replication factor C large
subunit - Methanopyrus kandleri
Length = 510
Score = 68.9 bits (161), Expect = 2e-10
Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILCLARALLGV 381
RP++ +V + LA +A G+ P +++ GPPG GKT+ LA
Sbjct: 9 RPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALAH----- 63
Query: 382 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK--------------IVILDE 519
F V+ELNAS+ R +V+ + + + L R +V++DE
Sbjct: 64 DFGWDVIELNASDKRTRNVIEKIVGGASTSRSLLRMTREAGGDYEHVEGHSDRVLVLVDE 123
Query: 520 ADSMTD----GAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQI 687
D + G AL R + + L AN+ + + ++ ++ + RL I
Sbjct: 124 VDGIDPREDRGGVTALTRAVR--QARNPMVLVANDPWVLPKSLRDAVRMIEFRRLRVNDI 181
Query: 688 LAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+ + IC +E + Y E + + A+GDLR+A+N+L++ A+ G ++ D+V
Sbjct: 182 VEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALARPTGRVTSDDV 234
>UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC
2.7.7.7) [Contains: DNA polymerase III subunit gamma];
n=39; Enterobacteriaceae|Rep: DNA polymerase III subunit
tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit
gamma] - Salmonella typhimurium
Length = 642
Score = 68.9 bits (161), Expect = 2e-10
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQTF +VG E ++ LA G + + +G GVGKT+ LA+ L G++
Sbjct: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70
Query: 388 KDAVLELNA---SNDRGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEADS 528
+ N R +D++ R K++ V P GR K+ ++DE
Sbjct: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E + +F LA + +K+ I SRC L QI ++ I
Sbjct: 131 LSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNV 846
N+E++++ + + A G LR AL+ Q+ A G G +S V
Sbjct: 191 LNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAV 237
>UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subunits;
n=2; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 429
Score = 68.5 bits (160), Expect = 3e-10
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 23/235 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-------- 372
RPQ ++G E V L A AP + +GP G GKT+T +A++L
Sbjct: 10 RPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQSSNEP 69
Query: 373 -----------LGVSFKDAV--LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 513
G++ +V EL+A+++ G++++R I V R KI I+
Sbjct: 70 TTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVE---SRFKIFII 126
Query: 514 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILA 693
DE +++ + QAL +T+E F K+ E I SRC + R+ + + +
Sbjct: 127 DECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPVSLVAS 186
Query: 694 KVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKV 855
+ +I ++E+++ V+AV +G LR +L L Q T G I+ + V+++
Sbjct: 187 YLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWEL 241
>UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella
tularensis|Rep: DNA polymerase III - Francisella
tularensis subsp. novicida GA99-3549
Length = 546
Score = 68.5 bits (160), Expect = 3e-10
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RPQ+F + G + ++ L +T + + G GVGKTT LA+ L GV+
Sbjct: 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA 70
Query: 388 KDAVLELNA---SNDRGIDVVR---------NKIKMFAQQKVTLPP-GRHKIVILDEADS 528
+ N +N+ ID++ + K +P GR+K+ ++DE
Sbjct: 71 EPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHM 130
Query: 529 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEI 708
++ + AL +T+E +F LA + KI I SRC L +S A I ++ I
Sbjct: 131 LSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKII 190
Query: 709 CNKENLSYTEEGVSAVVFTAQGDLRSALNNL 801
KEN++ E+ + + + A+G LR AL+ L
Sbjct: 191 LAKENINSDEQSLEYIAYHAKGSLRDALSLL 221
>UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Dichelobacter nodosus VCS1703A|Rep: DNA
polymerase III, subunits gamma and tau - Dichelobacter
nodosus (strain VCS1703A)
Length = 665
Score = 68.5 bits (160), Expect = 3e-10
Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Frame = +1
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
++E++A++ RGID + + V GR+K+ ++DE T + AL +T+E
Sbjct: 90 LIEVDAASRRGIDETKELLDNLPYAPVK---GRYKVYLIDEVHMFTRESFNALLKTLEEP 146
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
+F LA + +K+ + SRC ++ Q+ + I E + Y E + +
Sbjct: 147 PPHVKFILATTDIQKVPTTVLSRCLQFHLKNINPEQLRQHLAHILQVERIDYEAEALVLL 206
Query: 757 VFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYK 933
A+G +R L+ L Q+ A G G + D+V + + ++L + D
Sbjct: 207 AQAARGSMRDGLSFLDQAIAYGQGVVKTDDVAYLLGAVPTAQIYRLLTKIAESDARAVRA 266
Query: 934 VIAKLCKIGYAAEDIVSNIFR 996
++ +L D++ ++F+
Sbjct: 267 ILTELDAFSPDYMDVLRHVFQ 287
>UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis
thaliana|Rep: F14L17.24 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1071
Score = 68.5 bits (160), Expect = 3e-10
Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 26/273 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL-------- 372
+P FD ++G V L K G ++ + GP G GKT+T L+ AL
Sbjct: 429 KPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEE 488
Query: 373 --------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG---RHK 501
LG S +D +LEL+A G + VR +K +TL P R+K
Sbjct: 489 MKPCGYCKECSDYMLGKS-RD-LLELDAGKKNGAEKVRYLLKKL----LTLAPQSSQRYK 542
Query: 502 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDA 681
+ ++DE + +L + +E F + + + IQSRC ++++ D
Sbjct: 543 VFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDG 602
Query: 682 QILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCD 861
I+ ++ +I + ENL + + + A G LR A L+ + I+ D V ++
Sbjct: 603 DIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVG 662
Query: 862 EPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIG 960
+ ++LE D E K +L +G
Sbjct: 663 VVSDDKLLELLELALSSDTAETVKKARELLDLG 695
>UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, AAA family
protein - Tetrahymena thermophila SB210
Length = 1242
Score = 68.1 bits (159), Expect = 4e-10
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Frame = +1
Query: 310 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-- 483
+I+GPPG+GKT+T+ LA+ + ++E NAS+ R + + I V
Sbjct: 695 LISGPPGIGKTSTVRLLAQ-----KYNMNIIEWNASDVRNKNAIETIINPLKDNTVLNFK 749
Query: 484 --PPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTR--FALAANNSEKIIEPIQSRCA 651
+ I+++DE D M+ G + M++ T F + + + + + S C
Sbjct: 750 HEVSSQRSIILMDEVDGMSSGDIGGNQALMKIIKETKNPIFCVCNDRYSQKLRSLASICF 809
Query: 652 VLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHI 831
+R+ + + QI +++E+C KE L + + + D+R ALN LQ ++ I
Sbjct: 810 DVRFYKPNKGQIAKRLLEVCRKEGLKSELNHLEFLAESVNNDIRQALNLLQMQSKKSKDI 869
Query: 832 S 834
S
Sbjct: 870 S 870
>UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau and
gamma) protein; n=3; Betaproteobacteria|Rep: DnaX; DNA
polymerase III (Subunits tau and gamma) protein -
Nitrosomonas europaea
Length = 525
Score = 68.1 bits (159), Expect = 4e-10
Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 28/294 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP+ F +VG E V L + + + G GVGKTT LA+AL GV+
Sbjct: 12 RPKDFSELVGQEHVVRALINSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNCEQGVTA 71
Query: 388 KDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 519
++EL+A+++ +D +R + V R+K+ ++DE
Sbjct: 72 APCGKCAACMAIDQGNFIDLIELDAASNTQVDAMRELLDNAQYAPVA---ARYKVYLIDE 128
Query: 520 ADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKV 699
++ A A+ +T+E +F LA + +KI + SRC ++ + I+ ++
Sbjct: 129 VHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQIPPSLIVERL 188
Query: 700 IEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDN---VFKVCDEP 867
EI + E + G+ + A+G LR AL+ L Q+ A G ++ + + V D+
Sbjct: 189 TEILSMEGIPADAAGLRLLAQAAKGSLRDALSLLDQAIAFGNSVVNESDTRAMLGVLDQD 248
Query: 868 HPMVVRQMLEAXTKQDIHEAYKVIAKL----CKIGYAAEDIVSNIFRVANFRYI 1017
H + +LEA +Q+ + + +L A +D+ + + R+A + I
Sbjct: 249 H---IFALLEALAEQNGAAIFAIADQLEAASVSFDQALQDLAALLHRLATAQVI 299
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 67.7 bits (158), Expect = 5e-10
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 24/233 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGV----- 381
RP+TFD ++G E L + G + + +GP G GKTT+ LAR L
Sbjct: 10 RPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCAKGPTP 69
Query: 382 -------SFKDA---------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP-GRHKIVI 510
S +D V+E++A++ G+D R+ ++ + P R+K+ I
Sbjct: 70 VPCGECPSCEDLANGGPGSLDVVEIDAASHNGVDDARD----LRERAIYAPARDRYKVFI 125
Query: 511 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQIL 690
LDEA +T AL + +E +F A EK+I I+SR + RL + L
Sbjct: 126 LDEAHMVTSQGFNALLKIVEEPPPHIKFIFATTEPEKVIGTIRSRTHHYPF-RLVPPEAL 184
Query: 691 AKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNV 846
+E +CN+E + + + VV G +R L+ L G G PD V
Sbjct: 185 GNYMEDLCNREGVQVAKGVLPLVVRAGGGSVRDTLSVLDQLIAGSG---PDGV 234
>UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4;
Bordetella|Rep: DNA polymerase III subunit Tau -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 743
Score = 67.7 bits (158), Expect = 5e-10
Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL---LGVSF 387
RP++FD ++G + V L T + + G GVGKTT LA++L G++
Sbjct: 56 RPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNCENGITS 115
Query: 388 K-----------DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILD 516
K DA LEL+A+++RG++ ++ +Q V P GR K+ ++D
Sbjct: 116 KPCGQCRACTEIDAGRFVDYLELDAASNRGVE----EMTQLLEQAVYAPGAGRFKVYMID 171
Query: 517 EADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAK 696
E +T A A+ +T+E +F LA + +KI + SRC ++ I+
Sbjct: 172 EVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPDAIVGH 231
Query: 697 VIEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNV 846
+ + +E + + + + A G +R AL+ Q+ A G++S + V
Sbjct: 232 LQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTDQAIAYSAGNLSEEAV 282
>UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Sphingomonas wittichii RW1|Rep: DNA polymerase
III, subunits gamma and tau - Sphingomonas wittichii RW1
Length = 582
Score = 67.7 bits (158), Expect = 5e-10
Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 26/258 (10%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL--LG---- 378
RPQ F+ ++G + V+ LA + G A ++ G GVGKT+T +A+AL +G
Sbjct: 16 RPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKALNCIGPDGQ 75
Query: 379 --------------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKI 504
V+ + V+E++A++ ID VR I+ V+ R+KI
Sbjct: 76 GGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREIIEAVRYASVS---ARYKI 132
Query: 505 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQ 684
I+DE ++ A L +T+E + +F A K+ + SRC R++ +
Sbjct: 133 YIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRFDLRRITADK 192
Query: 685 ILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QSTAQGFGHISPDNVFKVCD 861
+ A + E + E ++ + A+G R L+ L Q+ A G G + V +
Sbjct: 193 LAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIAHGSGRVEAQQVRDMLG 252
Query: 862 EPHPMVVRQMLEAXTKQD 915
VR++ K D
Sbjct: 253 LSDRGAVRRLFGEMLKGD 270
>UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;
n=3; Piroplasmida|Rep: Replication factor C subunit,
putative - Theileria annulata
Length = 351
Score = 67.7 bits (158), Expect = 5e-10
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 29/262 (11%)
Frame = +1
Query: 292 GNAPNIIIAGPPGVGKTTTILCLARALLG----------VSFKDAV------LELN---- 411
G P+ + GP G GK + IL R++ G +S+KD E++
Sbjct: 34 GELPHFLFYGPSGAGKKSRILATLRSVFGNKVDKIKTDVLSYKDTSEVVVCQSEVHIQIP 93
Query: 412 ----ASNDRGI--DVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMEL 573
+ DR I D++R+ + ++ + ++AD++T AQ ALRRTME
Sbjct: 94 CQELGTRDRYIVQDIIRSLSSAPSASNFFSKGPSYRAFLFEDADTLTQEAQAALRRTMET 153
Query: 574 YSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLS---YTEEG 744
Y R L +I+ P++SRC +R ++ +I+ + +ICN E+++ +++
Sbjct: 154 YIKNARMFLHVRQLSRIMPPLRSRCLCIRVRSHTNDEIVQILRKICNSEDITPSQASDQM 213
Query: 745 VSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHE 924
+ + +++ +LR ++ L++ A G + N ++ VV+ ++ + T +
Sbjct: 214 LRNIAESSKRNLRRSILTLETIAMGGFTLQTKNFMMPWEKNITQVVQSVVSSQTPSTLSA 273
Query: 925 AYKVIAKLCKIGYAAEDIVSNI 990
I +L + I+ NI
Sbjct: 274 VRPQIYELLVCCIPGDLILENI 295
>UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III,
gamma/tau subunits; n=2; Alteromonadales|Rep: Putative
DnaX, DNA polymerase III, gamma/tau subunits -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 842
Score = 67.3 bits (157), Expect = 7e-10
Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 20/263 (7%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALL---GVS 384
RPQTF +VG V + V A T N + + G GVGKTT A++L G+S
Sbjct: 11 RPQTFHELVGQSH-VKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAKSLNCDEGIS 69
Query: 385 FKDAVLELNASND----RGIDVV------RNKIKMFAQ--QKVTLPP--GRHKIVILDEA 522
+ ++ D R ID++ R K++ + V P GR+K+ ++DE
Sbjct: 70 ANPCG-QCSSCKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRYKVYLIDEV 128
Query: 523 DSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVI 702
++ + AL +T+E +F LA + +K+ I SRC + LS ++I ++
Sbjct: 129 HMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQSEIKTQLE 188
Query: 703 EICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTAQGFGHISPDNVFKVCDEPHPMV 879
+ E L++ ++ + + A G +R AL+ Q+ AQ G I+ V +
Sbjct: 189 HVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTMLGLMDTHY 248
Query: 880 VRQMLEAXTKQDIHEAYKVIAKL 948
+ +L A QD K +A +
Sbjct: 249 SQSLLAALLAQDGAALMKEVANV 271
>UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Shewanella|Rep: DNA polymerase III, subunits
gamma and tau - Shewanella sp. (strain MR-4)
Length = 1071
Score = 67.3 bits (157), Expect = 7e-10
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 1/242 (0%)
Frame = +1
Query: 277 VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIK 456
+FAK N + A P GV + + R F D ++E++A++ +D R +
Sbjct: 57 LFAKGLNCEKGVTASPCGVCGSCVEIAQGR------FVD-LIEVDAASRTKVDDTRELLD 109
Query: 457 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPI 636
Q + T GR K+ ++DE ++ + AL +T+E +F LA + +K+ +
Sbjct: 110 N-VQYRPTR--GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166
Query: 637 QSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTA 813
SRC L+ +I ++ I +E L + E ++ + A G +R AL+ Q+ A
Sbjct: 167 LSRCLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIA 226
Query: 814 QGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIF 993
G G + + V + V ++L+A T DI + A++ G A++++ ++
Sbjct: 227 FGGGTVMLNQVQSMLGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLL 286
Query: 994 RV 999
+
Sbjct: 287 EL 288
>UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Shewanella sp. ANA-3|Rep: DNA polymerase III,
subunits gamma and tau - Shewanella sp. (strain ANA-3)
Length = 1040
Score = 67.3 bits (157), Expect = 7e-10
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 1/242 (0%)
Frame = +1
Query: 277 VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIK 456
+FAK N + A P GV + + R F D ++E++A++ +D R +
Sbjct: 57 LFAKGLNCEKGVTASPCGVCGSCVEIAQGR------FVD-LIEVDAASRTKVDDTRELLD 109
Query: 457 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPI 636
Q + T GR K+ ++DE ++ + AL +T+E +F LA + +K+ +
Sbjct: 110 N-VQYRPTR--GRFKVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTV 166
Query: 637 QSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQSTA 813
SRC L+ +I ++ I +E L + E ++ + A G +R AL+ Q+ A
Sbjct: 167 LSRCLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIA 226
Query: 814 QGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKLCKIGYAAEDIVSNIF 993
G G + + V + V ++L+A T DI + A++ G A++++ ++
Sbjct: 227 FGGGTVMLNQVQSMLGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLL 286
Query: 994 RV 999
+
Sbjct: 287 EL 288
>UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n=3;
Ostreococcus|Rep: Replication factor C 110 kDa subunit -
Ostreococcus tauri
Length = 553
Score = 67.3 bits (157), Expect = 7e-10
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRG-----ID----VVRNKIKM 459
I+I+GPPGVGKTTT + L + LG+ L +NAS+ RG +D + + ++
Sbjct: 112 ILISGPPGVGKTTTAVLLCKE-LGLQ----TLNINASDSRGKSGKVVDGIAGTLASAVRE 166
Query: 460 FAQQKVTLPPGRHKI---VILDEADSMTDGAQQALRRTMELYSST--TRFALAANNSEKI 624
F K + +I+DE D M G + L +++ T + + +
Sbjct: 167 FVTNKCIGSDSEQTVRSALIMDEVDGMAGGDRGGLSELIDIIKQTRIPIICICNDRYSQK 226
Query: 625 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
++ + + C L + R + QI V+++ N + L ++ V +++ DLRS +N LQ
Sbjct: 227 LKTLANYCVDLPFQRPNKLQIRKYVVQLANSKRLQIDQDSVDSLIEANNNDLRSIINQLQ 286
Query: 805 STAQG 819
+ G
Sbjct: 287 LWSMG 291
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,348,596
Number of Sequences: 1657284
Number of extensions: 17906428
Number of successful extensions: 60481
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 56688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60133
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 117912272470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -