Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I03
(1180 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 345 7e-96
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 173 4e-44
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 160 3e-40
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 77 5e-15
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 54 5e-08
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 48 3e-06
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 34 0.044
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 33 0.10
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.18
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 31 0.24
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 31 0.24
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 31 0.24
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.72
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 30 0.72
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.95
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.95
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.7
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 29 1.7
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 29 1.7
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 2.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 2.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 6.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 6.7
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 27 6.7
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 6.7
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 8.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 8.8
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 345 bits (848), Expect = 7e-96
Identities = 159/260 (61%), Positives = 209/260 (80%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP D IVGNE T+ RL V AK GN P+++I+G PG+GKTT+ILCLA ALLG ++K+ V
Sbjct: 28 RPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAYKEGV 87
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
LELNAS++RGIDVVRN+IK FAQ+KV LPPGRHKI+ILDEADSMT GAQQALRRTME+YS
Sbjct: 88 LELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIYS 147
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
+TTRFALA N S KIIEPIQSRCA+LRYSRL+D Q+L +++ IC E ++YT++G++A++
Sbjct: 148 NTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALI 207
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
TA+GD+R A+NNLQST GFG ++ +NVF+V D+P P+ + ML A +I A + +
Sbjct: 208 MTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVALEKL 267
Query: 940 AKLCKIGYAAEDIVSNIFRV 999
+ +G++A DIV+N+FRV
Sbjct: 268 QGIWDLGFSAVDIVTNMFRV 287
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 173 bits (421), Expect = 4e-44
Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 1/259 (0%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
RP + +V ++ +S L F + P+++ GPPG GKT+TIL AR + G ++++ +
Sbjct: 30 RPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQL 89
Query: 400 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 579
+ELNAS+DRGID VR +IK FA + K++ILDEAD+MT AQ ALRR +E Y+
Sbjct: 90 MELNASDDRGIDAVREQIKNFASTRQIFA-STFKMIILDEADAMTLAAQNALRRVIEKYT 148
Query: 580 STTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 759
RF + N KI IQSRC R+ L +I V + E+ + + AV+
Sbjct: 149 KNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVL 208
Query: 760 FTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVI 939
++GD+R ALN LQ+ + HI ++ PHP + L++ + A+ I
Sbjct: 209 RLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTI 268
Query: 940 AKL-CKIGYAAEDIVSNIF 993
+ + + G A +DI++ IF
Sbjct: 269 SSIKQQKGLALQDILTCIF 287
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 160 bits (389), Expect = 3e-40
Identities = 100/269 (37%), Positives = 149/269 (55%), Gaps = 9/269 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF-KDA 396
RP+T D + E TV L + N P+++ G PG GKT+TIL L+R L G K
Sbjct: 26 RPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSR 85
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVT-----LPPGRHKIVILDEADSMTDGAQQALRR 561
VLELNAS++RGI ++R K+K FA+ VT P KI+ILDEADSMT AQ ALRR
Sbjct: 86 VLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRR 145
Query: 562 TMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEE 741
TME Y+ TRF L N +II+P+ SRC+ R+ L + ++ ++ I + +S
Sbjct: 146 TMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPG 205
Query: 742 GVSAVVFTAQGDLRSALNNLQSTA---QGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
V+A+V + GD+R A+ LQS A QG I+ +V ++ ++R +L+ +
Sbjct: 206 VVNALVECSGGDMRKAITFLQSAANLHQG-TPITISSVEELAGAVPYNIIRSLLDTAYTK 264
Query: 913 DIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
++ + + GY+ I+S + V
Sbjct: 265 NVSNIETLSRDVAAEGYSTGIILSQLHDV 293
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 77.0 bits (181), Expect = 5e-15
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 28/224 (12%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG------- 378
RP+T + ++ RL + T P++++ GP G GK T ++ + R L G
Sbjct: 8 RPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSEKLK 67
Query: 379 ---------------VSFKDAV--LELNASNDRGID--VVRNKIKMFAQQ-KVTLPPGR- 495
++ ++ LE+ S+ D +++ +K AQ +V L +
Sbjct: 68 IDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKI 127
Query: 496 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLS 675
K+V+++ AD +T AQ ALRRTME YS+ R L AN++ KIIEPI+SR ++R + +
Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPT 187
Query: 676 DAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 807
+I+ + +I + L + ++ + +LR A+ L++
Sbjct: 188 PEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 53.6 bits (123), Expect = 5e-08
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 13/192 (6%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDR----------GIDVVRNKIK 456
++++GPPG+GKTT +A+ L G VLELNAS+ R G+ ++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAK-LEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAG 466
Query: 457 MFAQQKVTLPPGRHKIV-ILDEADSMTDGAQQALRR-TMELYSSTTRFALAANN-SEKII 627
F + + + ++V I+DE D M+ G + + + M + S N+ + +
Sbjct: 467 YFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKL 526
Query: 628 EPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 807
P+ LR+ R + ++++ I +E L + + V +V Q D+R +N L +
Sbjct: 527 RPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLST 586
Query: 808 TAQGFGHISPDN 843
++P N
Sbjct: 587 YKLSCSEMTPQN 598
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 48.0 bits (109), Expect = 3e-06
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 20/186 (10%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 486
+++ G G GKTT +A +K VLE+NAS+DR V K+ L
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDRTAHTVHEKVSSAISNHSAL- 472
Query: 487 PGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEK--------------- 621
+ VI+DE D +AL +E T ++ A N+ +K
Sbjct: 473 SSQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKKLCRPIICICN 532
Query: 622 -----IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRS 786
+ P++ ++ + A ++ ++ IC EN++ ++ + D+RS
Sbjct: 533 DLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDIRS 592
Query: 787 ALNNLQ 804
+N+LQ
Sbjct: 593 CINSLQ 598
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.9 bits (74), Expect = 0.044
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 274 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 375
A++A + N +I GPPG GKT TIL + A+L
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVL 1311
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 32.7 bits (71), Expect = 0.10
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +1
Query: 310 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 489
+I G PG GKTTTI L R+LL K + L + +D + K+K V L
Sbjct: 952 LILGMPGTGKTTTISSLIRSLLA---KKKKILLTSFTHLAVDNILIKLKGCDSTIVRL-G 1007
Query: 490 GRHKIVILDEADSMTDG 540
HKI L + +T+G
Sbjct: 1008 SPHKIHPLVKEFCLTEG 1024
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.9 bits (69), Expect = 0.18
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 277 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNK 450
V+ TG P +++ GPPG GKT LA LGV F S G K
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALANE-LGVPFISISAPSIVSGMSGES--EKK 255
Query: 451 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 570
++ ++ +L P ++ +DE D++T + A +R ME
Sbjct: 256 VREVFEEAKSLAP---CLMFIDEIDAVTPKRESA-QREME 291
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 274 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 375
A+ N +I GPPG GKT TI+ + ALL
Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTIIGIISALL 1170
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 235 DXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 375
D ++G E + R N ++ G PGVGKT+ LAR ++
Sbjct: 181 DPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRII 227
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 31.5 bits (68), Expect = 0.24
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Frame = +1
Query: 643 RCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV---VFTAQGDLRSALNNLQ-ST 810
R VL+++ ++ + + I KE + + + +S V ++GDLRSA+N+LQ S
Sbjct: 266 RVTVLQFNPIAPTYMKKCLGSILRKEGVPKSPKLLSLVENICSASEGDLRSAINSLQLSI 325
Query: 811 AQGFGHISPDNVFKVCD-----EPHPMVVRQMLEAXTKQDIHEAY 930
+Q F N+ +V + + Q+LE +K D EAY
Sbjct: 326 SQSFEKKGTKNIREVKEGKGKGNDFSLEAAQVLERLSKSD-SEAY 369
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARAL 372
++I GP G GK+T + LA+ L
Sbjct: 108 LLICGPSGCGKSTAVQVLAKEL 129
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.72
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 301 PNIIIAGPPGVGKTT 345
PNIII G PG GKTT
Sbjct: 9 PNIIICGTPGTGKTT 23
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 277 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAV 399
+F + G P +++ GPPG GKT +A A LGV+F V
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVA-ASLGVNFLKVV 198
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 310 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASND 423
++ GPPG GK+T + + L + ++ L+ +ND
Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPAND 43
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 235 DXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 375
D ++G E + R N + GP GVGKT + LA ++
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRII 157
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLAR 366
I++ G PGVGKT+ I LAR
Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 262 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 378
+ +LA +T N P +++ G G GKTTTI LA LLG
Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLA-GLLG 492
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 510 YHYFMSTRWQS--NLLLRKHFYLIPDDIY 430
Y ++STRW LLLR +Y P DIY
Sbjct: 197 YTEYVSTRWYRAPELLLRDSYYSFPVDIY 225
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -3
Query: 863 SSHTLNTLSGLM*P--KPWAVDCRLFRADRKSPCAVKTTALTPSSVYDRFSLLQISITFA 690
S+ T ++GL+ + W + C +F+A+ +V+T +SV+D+ +LL + ++
Sbjct: 155 SNITTEKMNGLLIAYLETWHIPCPIFKAEDLFNLSVRTWKNPSASVHDK-ALLYLILSIG 213
Query: 689 SICASLSLEYRST 651
S + L+ S+
Sbjct: 214 SAASYFDLQSNSS 226
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 2.9
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLA----RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 474
I++ GPPG GK+ +A +S D V + ++R +VR +M +QK
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESER---LVRQLFEMAREQK 221
Query: 475 VTLPPGRHKIVILDEADSM----TDGAQQALRR 561
+ I+ +DE DS+ ++G ++ RR
Sbjct: 222 PS-------IIFIDEIDSLCGSRSEGESESSRR 247
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 298 APNIIIAGPPGVGKTTTILCLARALLGV 381
+P +I G G GKTT I CL A G+
Sbjct: 27 SPLTLIVGQNGSGKTTIIECLKYATTGI 54
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 GNAPNIIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLELNAS 417
G ++II GP G GK+ + L+RA ++ K V+ LN +
Sbjct: 573 GEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGT 615
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 301 PNIIIA--GPPGVGKTTTILCLAR 366
P +I+A GPPG GK+T I L R
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVR 96
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 6.7
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 310 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 486
+I GPPG GKT T++ + + L V +L ASN +D + +++ V L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL--VLRNKRILVCGASN-LAVDNIVDRLSSSGIPMVRLGH 285
Query: 487 PGRHKIVILDEA 522
P R ILD +
Sbjct: 286 PARLLPSILDHS 297
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 313 IAGPPGVGKTTTILCLARALLGVSFKDAV 399
+ GPPGVGKT+ +A AL F+ +V
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSV 604
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -3
Query: 593 KRVVLEYSSMVRLNAC*APSVMLSASSSITILCRPGGKVT 474
+ + ++S + P ++L++SSSI LC+P K++
Sbjct: 188 RSIARSFNSSYKEKILTVPDIILNSSSSIMALCQPEKKMS 227
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARAL 372
I++AGPP GKT + +A++L
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSL 89
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 292 GNAPN-IIIAGPPGVGKTTTILCLARALLG 378
G P +++ GPPG GKT LARA+ G
Sbjct: 297 GKLPRGVLLTGPPGTGKT----MLARAVAG 322
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 8.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 286 KTGNAP-NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIK 456
K N P I + G GVGK+TT+ +A LL +F+ V + I+ + +K
Sbjct: 337 KNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVK 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,846,703
Number of Sequences: 5004
Number of extensions: 74051
Number of successful extensions: 283
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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