Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_I03
(1180 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 332 4e-91
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 178 5e-45
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 135 7e-32
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 83 4e-16
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 52 1e-06
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 31 1.6
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 31 2.1
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 31 2.1
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 29 4.8
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 29 6.4
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 29 8.4
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 8.4
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 8.4
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 332 bits (815), Expect = 4e-91
Identities = 157/269 (58%), Positives = 204/269 (75%)
Frame = +1
Query: 193 QIYHGIXXXRPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 372
Q+ + RP+ IVGNE V RL V GN PNI+++GPPG GKTT++ LAR L
Sbjct: 8 QLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALAREL 67
Query: 373 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 552
LG K+AVLELNAS++RGIDVVR++IK FAQ KVTLP GRHKI+ILDEADSMTDGAQQA
Sbjct: 68 LGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQA 127
Query: 553 LRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
LRRTME+Y+ TTRFALA N SEKIIEPIQSRCA+LRY++LS Q+L +V E+ E ++Y
Sbjct: 128 LRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNY 187
Query: 733 TEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
+ G+ A++FTAQGD+R ALNNLQ+T + ++ +NV KVCDEPHP ++ +ML T +
Sbjct: 188 DDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDR 247
Query: 913 DIHEAYKVIAKLCKIGYAAEDIVSNIFRV 999
EA K+I + ++G++++DIVS +FRV
Sbjct: 248 KFFEASKIIHEFHRLGFSSDDIVSTLFRV 276
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 178 bits (434), Expect = 5e-45
Identities = 99/267 (37%), Positives = 148/267 (55%), Gaps = 10/267 (3%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VSFKDA 396
RP D +V +E V L F + P+++ GPPG GKTTT+L AR +
Sbjct: 36 RPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASM 95
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKIVILDEADSMTDGAQQA 552
VLELNAS++RGIDVVRN I FAQ K + G K+VILDEAD+MT AQ A
Sbjct: 96 VLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNA 155
Query: 553 LRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY 732
LRR +E Y+ RF + N I+ IQSRC R++ L I+ ++ I E L
Sbjct: 156 LRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKM 215
Query: 733 TEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQ 912
T +G A++ ++GD+R+ +N LQSTA F +S + V++ +P P ++++++
Sbjct: 216 TPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLND 275
Query: 913 DIHEAYKVI-AKLCKIGYAAEDIVSNI 990
+ I KL + GYA +D+++++
Sbjct: 276 PSKKCMNTIQTKLFENGYALQDVITHL 302
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 135 bits (326), Expect = 7e-32
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 5/203 (2%)
Frame = +1
Query: 220 RPQTFDXIVGNEXTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 396
RP+T D I + V+ L + + P+++ GPPG GKT+ L R L + F D
Sbjct: 22 RPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDR 81
Query: 397 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQALRRT 564
VL+LNAS++RGI VVR KI+ F++ + KI+ILDE D+MT AQ A+RR
Sbjct: 82 VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRV 141
Query: 565 MELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 744
+E +S TTRF L N ++I P+ SRCA R+ L + ++ IC+ E +++
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 745 VSAVVFTAQGDLRSALNNLQSTA 813
+ V+ ++GDLR A+ LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 83.0 bits (196), Expect = 4e-16
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Frame = +1
Query: 301 PNIIIAGPPGVGKTTTILCLARALLGV---------------SFKDAVLELNASN----- 420
P+++ GP G GK T I CL R L GV S K ++ +SN
Sbjct: 38 PHLLFCGPSGAGKKTRIKCLLRELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEM 97
Query: 421 ---DRGID---VVRNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 576
D GI VV++ +K AQ Q + K+V+L EADS+T AQ LRRTME Y
Sbjct: 98 TPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKY 157
Query: 577 SSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 756
++ + L+ + +IIEP+QSRC ++ +D + + ++ +E+ E + +
Sbjct: 158 ANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKI 217
Query: 757 VFTAQGDLRSAL 792
V ++G+LR A+
Sbjct: 218 VEKSEGNLRRAI 229
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 51.6 bits (118), Expect = 1e-06
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Frame = +1
Query: 310 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKI---------KMF 462
+++G PGVGKTT +A LG+ ++E+NAS+ R + KI + F
Sbjct: 344 LLSGSPGVGKTTCAY-MACQQLGLQ----LVEMNASDVRSKKHLEAKIGELSGSHQIEQF 398
Query: 463 AQQKVTLPPGR---HKIVILDEADSMTDGAQQA-LRRTMELY--SSTTRFALAANNSEKI 624
K P H I+I+DE D M+ +A + +++ S + +
Sbjct: 399 FGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPK 458
Query: 625 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 804
I + + C LR+ + I ++++ IC++E + +E + ++ + D+R + NLQ
Sbjct: 459 IRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518
Query: 805 STAQGFG 825
++G G
Sbjct: 519 MRSKGVG 525
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 33.5 bits (73), Expect = 0.30
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 5/174 (2%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 486
++++GP G+GK+T +AR G S +++NAS+ R + + ++ + TL
Sbjct: 333 LLLSGPAGLGKSTLARIVARQ-AGYS----TIDVNASDARTVADLNKVLEGAVKTSRTLD 387
Query: 487 PG-RHKIVILDEAD-SMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLR 660
R +ILDE D + D + +R R + + ++ V
Sbjct: 388 ADQRPACLILDEIDGTPIDTIRHLVRCIQATGKKAIRRPIIGICNNLYTPALRDLRGVAW 447
Query: 661 YSRL--SDAQILAKVI-EICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 813
+L + +LAK + EIC++E L + + D+R ++N LQ A
Sbjct: 448 CVQLVATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWVA 501
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 304 NIIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT 480
N+++ GP GVGKT LAR L + ++ D + + G DV K+
Sbjct: 143 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCT-SMTQAGYVGEDVESVIQKLVQAAGGN 201
Query: 481 LPPGRHKIVILDEADSM 531
+ + IV LDE D +
Sbjct: 202 VEKAQQGIVFLDEVDKI 218
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 304 NIIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT 480
N+++ GP GVGKT LAR L + ++ D + + G DV K+
Sbjct: 259 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCT-SMTQAGYVGEDVESVIQKLVQAAGGN 317
Query: 481 LPPGRHKIVILDEADSM 531
+ + IV LDE D +
Sbjct: 318 VEKAQQGIVFLDEVDKI 334
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNAS-NDRGIDVVRNKIKMFAQQKVTL 483
+++ GPPG GKT C+A F + L + G +VR +F+ ++ L
Sbjct: 352 VLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVR---ALFSVARLKL 408
Query: 484 PPGRHKIVILDEADSMTDGAQQA 552
P ++ +DE DS+ ++
Sbjct: 409 P----SVIFIDEIDSLLSSRSES 427
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 286 KTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRG 429
+T PNI++ G PG GK+T +A LG F + E+ +N +G
Sbjct: 5 ETRRRPNILVTGSPGTGKSTLGQQVAEK-LGFVFIEVSKEVRENNLQG 51
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.1
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 19/189 (10%)
Frame = +1
Query: 286 KTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRG--IDVVRNKIKM 459
+T + +I ++G PG GKT T + + ++ LG S + ++ ++N + + + +
Sbjct: 191 ETNTSLSIYVSGQPGTGKTATTMRVLKS-LGKSVRSCIVNCASTNTKSALFKTIFESLDL 249
Query: 460 FAQQKVTLPPGRHK------IVILDEADSMTDGAQQALRRTMELYSSTTR--FALAANNS 615
+ + K +++LDE D + + AL + + +R L NS
Sbjct: 250 DGKPNEEIFEKHVKQFKTPLVLVLDEIDHLANRKNAALYAAFQWPETLSRKIIILGIANS 309
Query: 616 EKIIEPIQSRCAVLRYSRLSDAQILAK--VIEICN-KENLSYTEEGVSAVVFTAQ----- 771
+ E + + + + + + K ++EI N K T A+ TA+
Sbjct: 310 IDLTERLLPKLMLAKPPKRLVFEPYTKDDIVEILNDKMKNEETSIDAKAIELTARKVAAM 369
Query: 772 -GDLRSALN 795
GDLR+AL+
Sbjct: 370 SGDLRTALH 378
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 29.5 bits (63), Expect = 4.8
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 11/233 (4%)
Frame = +1
Query: 286 KTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMF 462
K+G P + ++ GPPG GKT + + + L + SN + I +
Sbjct: 815 KSGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNWPNQRTLIVTHSNQALNQLFEKIIALD 874
Query: 463 AQQKVTLPPGRHKIVILDEADSMTDG-AQQALRRTMELYSSTTRFALAANNSEKIIEPIQ 639
++ L G + + E D G L+ ++L + + A A KI+ +
Sbjct: 875 VDERHLLRMGHGEEALETEKDFSRYGRVNYVLKERLQLLNCVEKLAKAL----KIVGDVA 930
Query: 640 SRCAVLRY-SRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQG------DLRSALN- 795
C Y R S ++ + + + + EG+ + +F G DL S N
Sbjct: 931 YTCENAGYFFRFSVCRVWEEFLAKVTSKGCNKLAEGIISEIFPFTGFFKDIPDLFSGNNS 990
Query: 796 -NLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLEAXTKQDIHEAYKVIAKLC 951
+L+ + HI + +F+ DE + + T+ + + K+IA C
Sbjct: 991 ADLKVAHSCWRHI--EQIFEKLDEFRAFELLRNGRDRTEYLLVKEAKIIAMTC 1041
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 29.1 bits (62), Expect = 6.4
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = +1
Query: 304 NIIIAGPPGVGKTTTILCLARALLGVSFK----DAVLELNASNDRGIDVVRNKIKMFAQQ 471
NI++ G PG K+ + + R L + + + L AS R D K Q
Sbjct: 464 NILLCGDPGTSKSQMLQYVYRLLPRSQYTSGKGSSAVGLTASVSRDADT-----KQLVLQ 518
Query: 472 KVTLPPGRHKIVILDEADSMTDGAQQALRRTME 570
L + + +DE D M + A+ L ME
Sbjct: 519 TGALVLADNGVCCIDEFDKMNESARSVLHEVME 551
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 28.7 bits (61), Expect = 8.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASND 423
++IAGPP GKT L +++ L GV F V SN+
Sbjct: 85 VLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNE 124
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARA 369
+++ GPPG GKT T+L R+
Sbjct: 2533 LVLCGPPGSGKTMTLLAALRS 2553
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 307 IIIAGPPGVGKTTTILCLARA 369
+++ GPPG GKT T+L R+
Sbjct: 2533 LVLCGPPGSGKTMTLLAALRS 2553
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,120
Number of Sequences: 27780
Number of extensions: 438586
Number of successful extensions: 1166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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