Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_H24
(1154 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 375 e-102
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 238 2e-61
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 227 6e-58
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 212 1e-53
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 205 1e-51
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 193 6e-48
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 187 4e-46
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 163 8e-39
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 2e-33
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 130 5e-29
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 128 2e-28
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 120 9e-26
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 118 3e-25
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 113 1e-23
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 112 1e-23
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 111 4e-23
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 109 1e-22
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 107 4e-22
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 106 9e-22
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 105 3e-21
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 103 7e-21
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 97 6e-19
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 95 3e-18
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 91 4e-17
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 90 9e-17
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 88 5e-16
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 85 2e-15
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 85 3e-15
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 82 3e-14
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 78 5e-13
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 66 2e-09
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 2e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 60 1e-07
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 58 4e-07
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 55 3e-06
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 55 4e-06
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 54 5e-06
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 54 5e-06
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 54 7e-06
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 52 3e-05
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 52 4e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 48 5e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 47 0.001
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 46 0.002
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 44 0.006
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 44 0.006
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 42 0.023
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 42 0.030
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 41 0.053
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 41 0.070
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 41 0.070
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.092
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 39 0.21
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 39 0.21
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 39 0.28
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 39 0.28
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 38 0.37
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 37 1.1
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 36 2.0
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 2.6
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 2.6
UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1; ... 35 3.5
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 35 3.5
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 35 4.6
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 5.2
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 6.0
UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia... 34 6.0
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 34 6.0
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 34 6.0
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 34 8.0
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 375 bits (922), Expect = e-102
Identities = 182/221 (82%), Positives = 194/221 (87%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
+SK RKFV G+FKAELN FLT LAE G SGVEVRVTP R+E II+ATR Q+VLGEKGR
Sbjct: 5 ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGR 64
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
RIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGI 184
Query: 619 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 741
KVKIMLPWD GK GPKKP PDH+ + EPKDE +P P SE
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 238 bits (583), Expect = 2e-61
Identities = 123/224 (54%), Positives = 154/224 (68%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
LSK +K V GVF AELN F T LAE G +GVEVR TP + E I+ A+ Q VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
F M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGI
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 619 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 750
KVKIM + GP + PD + + E KDE + P V+S
Sbjct: 186 KVKIMKD-PAANRFGP-RALPDAVKIAEAKDEDEVI-PAPTVKS 226
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 227 bits (554), Expect = 6e-58
Identities = 117/210 (55%), Positives = 147/210 (70%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
LSK R V GVF AEL FL LA+ G +GVE RVTP R+E +I +T+ + VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
++MESGA+GCEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
Query: 619 KVKIMLPWDQQGKNGPKKPQPDHILVTEPK 708
VKIM P Q + PD I V EPK
Sbjct: 236 NVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 212 bits (518), Expect = 1e-53
Identities = 95/212 (44%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
++K +KFV GVF AEL+ F + L + G +G+EVR TP ++E I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
+ +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
Query: 619 KVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 708
KVKIMLP++ K G K P PD++++ PK
Sbjct: 198 KVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 205 bits (501), Expect = 1e-51
Identities = 96/210 (45%), Positives = 138/210 (65%)
Frame = +1
Query: 82 SKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRR 261
+K R+ + G+F AELN LT L + G G EVR TP R+E II A + + GRR
Sbjct: 7 TKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRR 66
Query: 262 IRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 441
++E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF
Sbjct: 67 LQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRF 126
Query: 442 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 621
+M++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q +GI+
Sbjct: 127 VMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIR 186
Query: 622 VKIMLPWDQQGKNGPKKPQPDHILVTEPKD 711
V IML D G +GPK+ QPD I V E KD
Sbjct: 187 VLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 193 bits (471), Expect = 6e-48
Identities = 115/209 (55%), Positives = 131/209 (62%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
+SK RKF GVF A LN LT L E G SG EVRVTP+ +E II AT+ +VLGEKG+
Sbjct: 5 MSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGK 64
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
+I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 65 KIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM--------- 115
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
L QRAKSMKF DG +I SG P DY++ A RHV LRQGVLGI
Sbjct: 116 -----------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGI 157
Query: 619 KVKIMLPWDQQGKNGPKKPQPDHILVTEP 705
KVKIM WD +GK P PD + + P
Sbjct: 158 KVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 187 bits (456), Expect = 4e-46
Identities = 87/206 (42%), Positives = 130/206 (63%)
Frame = +1
Query: 94 KFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIREL 273
+F+ G+ AEL F L G S +E+R+ + I+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 274 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 453
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 454 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 633
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IM
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200
Query: 634 LPWDQQGKNGPKKPQPDHILVTEPKD 711
LP+D +G GP P PD I + EP +
Sbjct: 201 LPYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 163 bits (396), Expect = 8e-39
Identities = 89/154 (57%), Positives = 106/154 (68%)
Frame = +1
Query: 205 EXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 384
E II AT+ Q+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 385 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 564
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 565 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 666
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 145 bits (352), Expect = 2e-33
Identities = 66/108 (61%), Positives = 84/108 (77%)
Frame = +1
Query: 409 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 588
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 589 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 732
LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 130 bits (315), Expect = 5e-29
Identities = 71/183 (38%), Positives = 105/183 (57%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
R F+ V + ++ FL L G G++++ TP+ ++ II A V+G GRRIRE
Sbjct: 5 RYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRE 64
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
LT +++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM
Sbjct: 65 LTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMN 122
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV I
Sbjct: 123 NGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
Query: 631 MLP 639
M P
Sbjct: 183 MPP 185
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 128 bits (310), Expect = 2e-28
Identities = 63/182 (34%), Positives = 107/182 (58%)
Frame = +1
Query: 94 KFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIREL 273
K++ + +AEL+ F + L + G + + T II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 274 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 453
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 454 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 633
GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIY 195
Query: 634 LP 639
P
Sbjct: 196 NP 197
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 120 bits (288), Expect = 9e-26
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
+KF+ GV + FLT L G G+++ TP+ ++ I A + V+G+ G+++R+
Sbjct: 5 KKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQ 64
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
LT + ++I VE+ ++V A AE L L G R+A +R IME
Sbjct: 65 LTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIME 122
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
SGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VKI
Sbjct: 123 SGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKI 182
Query: 631 MLPWDQQGKNGPKKPQPDHILVTEPKDEPV-PLEP 732
+ P + P +L EPK P P+EP
Sbjct: 183 VPP-------DARLPDAFDVLEPEPKKAPAEPIEP 210
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 118 bits (284), Expect = 3e-25
Identities = 63/183 (34%), Positives = 104/183 (56%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
+KFV G KA ++ + L+ G G+E+ TP+ ++ +I + + V+G+ G+ IR+
Sbjct: 5 KKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRK 64
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 65 LTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMN 122
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+I
Sbjct: 123 AGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRI 182
Query: 631 MLP 639
+ P
Sbjct: 183 IQP 185
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 113 bits (271), Expect = 1e-23
Identities = 56/183 (30%), Positives = 99/183 (54%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
R FVG V + ++ + L G S ++ + TPI + + A + V+G KG+ ++E
Sbjct: 4 RTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKE 63
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
LT + +++ +E+ ++V L + L G+ R+ + +R +M
Sbjct: 64 LTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMG 121
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
SGA+G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VKI
Sbjct: 122 SGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKI 181
Query: 631 MLP 639
M P
Sbjct: 182 MRP 184
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 112 bits (270), Expect = 1e-23
Identities = 67/217 (30%), Positives = 111/217 (51%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
+ FV G+ + ++ +L L G G++V+VTP+ + ++ A R V+G G+ +R
Sbjct: 4 KDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRA 63
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
+T ++ +F++ VE+ ++V L A + L G+ RR Y +R IM
Sbjct: 64 ITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMA 121
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+I
Sbjct: 122 AGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRI 181
Query: 631 MLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 741
M P PD + + +P+ P E SE
Sbjct: 182 M---------PPDVVLPDKVEIEDPRVTETPAEEASE 209
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 111 bits (266), Expect = 4e-23
Identities = 61/188 (32%), Positives = 103/188 (54%)
Frame = +1
Query: 76 NLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKG 255
N+ +KFV G+ K EL+ +L L G G+ ++ P ++ I R +G +G
Sbjct: 7 NVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRG 66
Query: 256 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 435
R IR + VQ+RF + + V + +++ + L A L L G+ RRA YG L
Sbjct: 67 RNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGAL 125
Query: 436 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 615
R IM +GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + + G +G
Sbjct: 126 RRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIG 185
Query: 616 IKVKIMLP 639
+ V+IM P
Sbjct: 186 VTVRIMPP 193
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 109 bits (263), Expect = 1e-22
Identities = 56/187 (29%), Positives = 110/187 (58%)
Frame = +1
Query: 79 LSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGR 258
++ ++F+ G+ + +++ F L G G++V TP+ ++ ++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 259 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 438
IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 439 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 618
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G+
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178
Query: 619 KVKIMLP 639
+VKI+ P
Sbjct: 179 RVKIIPP 185
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 107 bits (258), Expect = 4e-22
Identities = 63/183 (34%), Positives = 97/183 (53%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
RK + G+ LN +L L + TPI ++ I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
+ V+++ F I +++ +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+I
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183
Query: 631 MLP 639
M P
Sbjct: 184 MKP 186
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 106 bits (255), Expect = 9e-22
Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Frame = +1
Query: 97 FVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELT 276
F+ + + +++ +L G S VE++ TP+ + II A R +++G +G+ I+++T
Sbjct: 12 FLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQIT 71
Query: 277 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 456
V+++ F IP V + KV L A A L L G RRA Y LR IM +G
Sbjct: 72 KVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAG 129
Query: 457 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 636
A G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+ GV G++V I
Sbjct: 130 AIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVIISK 189
Query: 637 PWDQQGKNGP---KKPQPDHILVTEPKDEPVPLEP 732
+++ + K P+ + +V + ++E +P
Sbjct: 190 KSEEERPDDEVRIKSPEEVNEIVQKIREEMQQTQP 224
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 105 bits (251), Expect = 3e-21
Identities = 64/183 (34%), Positives = 97/183 (53%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
RKFV + K + ++ + G GV++ TP+ ++ + R V+G+ GRRI+
Sbjct: 5 RKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKA 64
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
LT + K F I V + ++V A A L L G RRA Y L IME
Sbjct: 65 LTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIME 121
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+I
Sbjct: 122 AGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRI 181
Query: 631 MLP 639
+ P
Sbjct: 182 IPP 184
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 103 bits (248), Expect = 7e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 499 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQ 678
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 679 PDHILVTEPK 708
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 97.5 bits (232), Expect = 6e-19
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
R F+ + K +++ +L +GVEV TPI + II A R ++G GR I++
Sbjct: 6 RYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQ 65
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
L + +K F + + + V L A A L L G RRA + +R IM
Sbjct: 66 LAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMN 123
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GA G E+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++V I
Sbjct: 124 AGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVI 183
Query: 631 MLPWDQQGK-NGPKKPQ-PDHILVT 699
P + K N + P P + VT
Sbjct: 184 TKPLKIEDKINLKESPSVPQEVSVT 208
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 95.1 bits (226), Expect = 3e-18
Identities = 60/183 (32%), Positives = 91/183 (49%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
R F+ K ++ +L +GVE+ TPI + II A R ++G+ G+ I++
Sbjct: 6 RHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQ 65
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
L V++K F + + + A + L A A L L G RRA + +R IM
Sbjct: 66 LAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMS 123
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
SGA G EV+VSGKL +RAK K +G + SG ++ A +L+ GV G++V I
Sbjct: 124 SGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183
Query: 631 MLP 639
P
Sbjct: 184 TKP 186
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 91.5 bits (217), Expect = 4e-17
Identities = 56/181 (30%), Positives = 93/181 (51%)
Frame = +1
Query: 97 FVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELT 276
F+ + K L+ FL + G +G+E+ TP +I A ++G G IR+L
Sbjct: 10 FIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLM 69
Query: 277 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 456
+++Q F + ++V + V L A A + L + RR +LR +ME+G
Sbjct: 70 TIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAG 127
Query: 457 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 636
A G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV G++V I+
Sbjct: 128 AVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVR 187
Query: 637 P 639
P
Sbjct: 188 P 188
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 90.2 bits (214), Expect = 9e-17
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Frame = +1
Query: 61 SWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSV 240
S P L +K + K + FL L++ G E+ TP+ + +I A R +
Sbjct: 2 SAPQRRLPVYKKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRI 61
Query: 241 LGEKGRRIRELTSVVQKRFNIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRR 417
+G KG ++E+++++ + + +++ K+ + A + + G+ RR
Sbjct: 62 IGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRR 121
Query: 418 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 597
+ +R +ME+GA+G E+VVSGKL +RA+ K G + G + V A HVLL
Sbjct: 122 VMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLL 181
Query: 598 RQGVLGIKVKI 630
+ G+ GI+V+I
Sbjct: 182 KPGIYGIEVRI 192
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 87.8 bits (208), Expect = 5e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +1
Query: 442 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 621
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 622 VKIMLPWDQ 648
+ P Q
Sbjct: 140 CRSCFPGTQ 148
Score = 75.4 bits (177), Expect = 3e-12
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +1
Query: 82 SKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEK 252
SK R+FV G+F+AELN FLT LAE G S VEVRVTP + E II+ TR Q+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 85.4 bits (202), Expect = 2e-15
Identities = 50/183 (27%), Positives = 92/183 (50%)
Frame = -3
Query: 633 HDFDLDS*YSLSEKHMSGSSVDVIITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGT 454
H+ D D+ +LS +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 453 RFHDETENTIASTTYSETSDKLVS*RFGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGS 274
H ++++T+ +++ +T +L FGL S +T+ + +ESL G
Sbjct: 142 SSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGG 201
Query: 273 QLTDSASFLSEHTLXPGGHNNXLRADGSDPHFHAGXAXLGQXPSEEXIEFRLENPXSNKF 94
QL DS S S++TL G +N L+ + G Q EE ++ +E+ S +
Sbjct: 202 QLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQL 261
Query: 93 AXL 85
+ L
Sbjct: 262 SFL 264
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 85.4 bits (202), Expect = 2e-15
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 1/200 (0%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
+L FL + + G SGVEV P ++ + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 480
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 481 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 660
SGKLRG R+ K G++ +G + V HV G++GI+++I D+ K+
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKD 192
Query: 661 GPKKPQPDHILVTEPKDEPV 720
K + D + +P+ V
Sbjct: 193 FEMKAEKDVVPAPKPEHHDV 212
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 85.0 bits (201), Expect = 3e-15
Identities = 48/185 (25%), Positives = 95/185 (51%)
Frame = +1
Query: 85 KXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRI 264
K RKF+ V + + ++ G + ++ TP + + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 265 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 444
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 445 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ V
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179
Query: 625 KIMLP 639
KI+ P
Sbjct: 180 KILNP 184
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 81.8 bits (193), Expect = 3e-14
Identities = 43/179 (24%), Positives = 96/179 (53%)
Frame = +1
Query: 181 VRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCA 360
++ T + + +I+A + ++G KG++++ L +++ +FN+ +++ E
Sbjct: 33 IQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKFNLDNVVIDVIQEPHPEYNARL 92
Query: 361 IAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 540
+A + + G+ RRA LR + E+ +G EV++SGKL +R++ K+ G++I
Sbjct: 93 VALR--IADAMAKGIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVI 150
Query: 541 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP 717
+G + V A VLL+ G+ ++V++ LP D + + + P+ + V + +++P
Sbjct: 151 KAGQDALEKVQEAVIPVLLKPGIFSVRVRV-LPPDAKLSDRFEVKSPEEVQVKQIENKP 208
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 77.8 bits (183), Expect = 5e-13
Identities = 49/183 (26%), Positives = 86/183 (46%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
R F+ V + + +L G G+E TP ++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
L ++ F + +E+ ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 451 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+GARGC +++SGK+ G R + KF G + G+ +++ + + G +G V+I
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRI 186
Query: 631 MLP 639
M P
Sbjct: 187 MRP 189
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 66.1 bits (154), Expect = 2e-09
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
RKF+ F+ L S V +R TPI + II + R + + E R
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 447
L +++ +F + + +E+ + L A AE L + + A RR L IM
Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 448 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 627
+GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV GI V
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVT 181
Query: 628 IMLP 639
I+ P
Sbjct: 182 ILKP 185
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 2e-09
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +1
Query: 277 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 453
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 454 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 633
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 59.7 bits (138), Expect = 1e-07
Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 5/203 (2%)
Frame = +1
Query: 37 SPKGSRL---QSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSE 207
+P G RL + W + +++ ++ + LA G + +E+ +
Sbjct: 6 NPNGFRLGVTKGWNSRWYAGKKQYASLLKEDEQIRQLINKKLAAAGIARIEIERAGQQVN 65
Query: 208 XIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 387
II A + V+G+ G I+EL +++ + +V + ++ + A A +
Sbjct: 66 VIISAAKPGVVIGKGGESIKELRGDIERL--VSAGTVAVNVAEIPNPNISAPLVALRIAE 123
Query: 388 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCN 561
++ A RRA + +MESGARG +V++SG+L G ++A++ K ++G + +H+
Sbjct: 124 QIERRFAFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEGRVPLHTLRADI 183
Query: 562 DYVNTATRHVLLRQGVLGIKVKI 630
DY R G+LGIKV +
Sbjct: 184 DYGTALAR---TTYGILGIKVLV 203
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 58.0 bits (134), Expect = 4e-07
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1
Query: 151 LAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSV 282
++E G SGV+VRVTP+R E II ATR Q+ LGEK RRIREL V
Sbjct: 17 ISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 55.2 bits (127), Expect = 3e-06
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 151 LAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVV 285
+ E G S V+VRVTP+ E I+ ATR Q+ L EKGRRIRELT V+
Sbjct: 140 ILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 54.8 bits (126), Expect = 4e-06
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +1
Query: 151 LAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSV 282
+ E G S V+VRVTP+ E II ATR Q+ L EKGRRIRELT V
Sbjct: 407 ILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 54.4 bits (125), Expect = 5e-06
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Frame = +1
Query: 121 AELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFN 300
+ + +L LA+ S + + I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 301 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 480
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 481 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
SG+L G + A+S F +G +H+ DY A L + G+LGIKV I
Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 54.4 bits (125), Expect = 5e-06
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Frame = +1
Query: 211 IIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYK 390
++ + + ++LG+ G I +LT +QK E + + + L AI AE + K
Sbjct: 68 LVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAIK 127
Query: 391 LIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCND 564
L R A +R M+SGA+G + VSG+L G A+S + +G M +H+ D
Sbjct: 128 LENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDVD 187
Query: 565 YVNTATRHVLLRQGVLGIKV 624
+ R G +G+KV
Sbjct: 188 FAMATAR---TTYGAIGVKV 204
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 54.0 bits (124), Expect = 7e-06
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 6/243 (2%)
Frame = +1
Query: 37 SPKGSRL---QSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSE 207
+P G RL ++W + R F G ++ +L L S V + +
Sbjct: 6 NPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNAR 65
Query: 208 XIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 387
I + R V+G+KG I L + ++ +P V + E+V + A A+S+
Sbjct: 66 ITIFSARPGVVIGKKGEDIENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQ 122
Query: 388 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCN 561
+L + RRA ++ M GA G +++ SG+L G + A+ + +G + +H+
Sbjct: 123 QLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADI 182
Query: 562 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP-VPLEPTS 738
DY T GV+G+KV W +G + P L P DE P P
Sbjct: 183 DY---GTSEAKTTYGVIGVKV-----WVYKGDTLGRGESPGAKLDAAPSDEERKPRGPRR 234
Query: 739 EVR 747
+ R
Sbjct: 235 DAR 237
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 52.0 bits (119), Expect = 3e-05
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1
Query: 76 NLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXI 213
++SK RKFV GVF A LN F LAE G SGVEVRVTP ++ I
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 51.6 bits (118), Expect = 4e-05
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
++ +L+ +A+ G + V + T R I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 483
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 484 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
G+L G + A+S ++ +G + +H+ DY A L G +G+KV I
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 48.0 bits (109), Expect = 5e-04
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 175 VEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 354
VE+ P R ++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 355 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 531
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEG 173
Query: 532 -LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
+H+ DY A H G +G+KV
Sbjct: 174 RTPLHTLRADIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 46.8 bits (106), Expect = 0.001
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 5/228 (2%)
Frame = +1
Query: 40 PKGSRL---QSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEX 210
P G RL + W + R F ++ +L LA V + +
Sbjct: 7 PTGFRLAVTRDWGSRWFASSRDFSKMLHEDLKVRDYLKKRLAHASVGRVVIERPAKNARV 66
Query: 211 IIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYK 390
+ + R V+G+KG I L +QK +P V + E+V + A A+S+ +
Sbjct: 67 TLFSARPGVVIGKKGEDIEALKRDLQKIVGVP---VHVNIEEVRKPEIDAKLIADSIAQQ 123
Query: 391 LIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCND 564
L + RRA ++ M GA+G +++ SG+L G + A++ + +G + +H+ D
Sbjct: 124 LEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRANID 183
Query: 565 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 708
Y GV+GIKV W +G+ + QP +V EP+
Sbjct: 184 Y---GVSEAQTTYGVIGIKV-----WVFKGEMLGRNEQP---VVAEPE 220
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 46.0 bits (104), Expect = 0.002
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Frame = +1
Query: 163 GXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 342
G + + + T + I A R +++G KG I L+ Q+ I + V++ +V
Sbjct: 53 GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLS---QELTRITGKEVKIDVIEVI 109
Query: 343 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 519
+ A E++ Y+L ++ RRA ++ M +GA G + +G+L G + A++ +
Sbjct: 110 KPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQ 169
Query: 520 FVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
+ +G + +H+ DY + T H + G +GIKV
Sbjct: 170 YKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 44.4 bits (100), Expect = 0.006
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Frame = +1
Query: 199 RSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 378
R + R ++G KG I L ++++FN + V + E++ T L A AES
Sbjct: 63 RINITVKTARPGIIIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAES 119
Query: 379 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 552
+ ++ + + A + M GA+G +V+V+G+L G + A+ ++ G L +
Sbjct: 120 IASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMVAGRLGGAEIARREWYLRGRLPLQKIK 179
Query: 553 PCNDYVNTATRHVLLRQGVLGIKVKI 630
DY TAT + G +GIKV I
Sbjct: 180 AIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 44.4 bits (100), Expect = 0.006
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Frame = +1
Query: 163 GXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 342
G +E+ T ++ R ++G+KG+ I L + +Q N+ + + L E+V
Sbjct: 56 GIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ---NLVGRRINLKVEEVG 112
Query: 343 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 519
L A AE + +L + RR +L M++GA+G ++ ++G+L G + A+ K
Sbjct: 113 RPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIKIQMAGRLGGAEMARREK 172
Query: 520 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNG 663
G + S ++ + QG +GI+V W QG G
Sbjct: 173 QSAGSIPLS--TLQAKIDYGFTEAMTPQGHIGIQV-----WINQGTYG 213
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 42.3 bits (95), Expect = 0.023
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Frame = +1
Query: 163 GXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 342
G S V + + + I++++ ++G KG + +L + +++ + + + L ++V
Sbjct: 51 GISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VKNKDISLSVDEVR 108
Query: 343 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 519
L A AE + ++ ++ RRA + ++SGA+G +V V G++ G A++
Sbjct: 109 VPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKGRIGGADLARAEW 168
Query: 520 FVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
F+ G M + + DY AT + + G+LGIKV I
Sbjct: 169 FLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 41.9 bits (94), Expect = 0.030
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 151 LAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQ 288
+ E G S ++V+VT + E II AT+ Q+ L E GR++RELT V +
Sbjct: 239 IPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 41.1 bits (92), Expect = 0.053
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 6/198 (3%)
Frame = +1
Query: 55 LQSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEV-RVTPIRSEXIIMATRX 231
++ W + +++V + +L L + + + R P R I +
Sbjct: 15 IRDWDAKWYADKKEYVPALQEDLRIRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKP 74
Query: 232 QSVLGEKGRRIRELTSVVQK---RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGG 402
V+G G + L S + K + + V + ++ L A + + L
Sbjct: 75 GIVIGRGGADVERLRSELSKIVDTYKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERR 134
Query: 403 LAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNT 576
+A RRA G ++ + +GA+G +VSG+L G A+ ++ +G + +H+ DY
Sbjct: 135 VAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEGTVPLHTLRADIDY--- 191
Query: 577 ATRHVLLRQGVLGIKVKI 630
+ + G LGIK I
Sbjct: 192 SWDEAMTSYGNLGIKTWI 209
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 40.7 bits (91), Expect = 0.070
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +1
Query: 151 LAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 330
L + S +++ T II R VLG++G+ + + + VQK VE+
Sbjct: 47 LKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKDRNLKVEVKV 106
Query: 331 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 507
+V A A + ++ + R +R +++G +G + VSG+L G + A
Sbjct: 107 IEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVSGRLGGVEMA 166
Query: 508 KSMKFVDG 531
++ +++G
Sbjct: 167 RTEGYIEG 174
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 40.7 bits (91), Expect = 0.070
Identities = 33/160 (20%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Frame = +1
Query: 163 GXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 342
G + +E++ + II + ++ +K RR+ EL VQK N + + + +++
Sbjct: 59 GIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRIS 118
Query: 343 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 522
AE + +L ++ R+A + ++ +G +V ++G++ G+ +++
Sbjct: 119 NPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEW 178
Query: 523 V-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 636
+ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 179 IREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 40.3 bits (90), Expect = 0.092
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Frame = +1
Query: 37 SPKGSR---LQSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSE 207
+P G R ++ W ++ K V ++ FL G +E+ +
Sbjct: 6 NPHGLRVGVIKDWDSRWYARNEKVGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVR 65
Query: 208 XIIMATRXQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 387
+ R V+G+ G I L ++K +SV L +V + A AE++
Sbjct: 66 IYLHCARPGVVIGKGGEAIEALRLQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQ 122
Query: 388 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 531
+L + RRA + M GARG + VSG+L G + A++ + DG
Sbjct: 123 QLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSGRLGGAEIARTEHYHDG 171
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 39.1 bits (87), Expect = 0.21
Identities = 33/144 (22%), Positives = 63/144 (43%)
Frame = +1
Query: 91 RKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRE 270
+ +VG V ++ ++ + G S V++ T R I R V+G +G
Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85
Query: 271 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 450
+ ++K + + V+L +V + A A+ + +L ++ RRA ++ M+
Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142
Query: 451 SGARGCEVVVSGKLRGQRAKSMKF 522
GA+G V SG+L G +F
Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 39.1 bits (87), Expect = 0.21
Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 2/218 (0%)
Frame = +1
Query: 55 LQSWPCXNLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQ 234
++ W + + F +L ++ + S V++ + + R
Sbjct: 15 IKDWSAKWHASDKNFAECLTEDLKLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPG 74
Query: 235 SVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVR 414
V+G G+R+ E+ ++ ++ + V+L +++ L A A S+ ++ +A R
Sbjct: 75 IVIGRGGQRVDEMRHFLE---DLIGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYR 131
Query: 415 RACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRH 588
RA + M++GA+G ++ SG+L G + A+ +G + +H+ DY T
Sbjct: 132 RAMKQAIFRSMQAGAKGIKICASGRLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHT 191
Query: 589 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTE 702
L G +GIKV W +G P+ + VTE
Sbjct: 192 AL---GDVGIKV-----WVYRGDILPEAKEKSESEVTE 221
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 38.7 bits (86), Expect = 0.28
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
++ +L+ G VE+ R + A + ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 483
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 484 GKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
G+L G + A+ + G+M +H+ DY + + G++G+KV I
Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 38.7 bits (86), Expect = 0.28
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 2/171 (1%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
++ +L L G S +E+ R + A R V+G G + ++K +
Sbjct: 37 KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---L 93
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 483
+ ++L +V + A A+ + +L +A RRA + M +GA G + S
Sbjct: 94 TGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCS 153
Query: 484 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
G+L G + ++S + +G + +H+ DY R G +G+KV I
Sbjct: 154 GRLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVWI 201
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 38.3 bits (85), Expect = 0.37
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Frame = +1
Query: 127 LNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNIP 306
+ F+ LA+ S +E+ + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 307 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 486
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 487 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+L G A++ + +G + +H+ DY A G LG+KV I
Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 36.7 bits (81), Expect = 1.1
Identities = 35/119 (29%), Positives = 48/119 (40%)
Frame = +1
Query: 268 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 447
EL K P V L V + AI AE L +L +A RRA VL I
Sbjct: 99 ELNKFRAKNGVSPTAKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQ 158
Query: 448 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
+G ++ VSG+L G +++ + D V+ R G+LGIKV
Sbjct: 159 RDRVQGAKIQVSGRLNGAEIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 35.9 bits (79), Expect = 2.0
Identities = 27/125 (21%), Positives = 51/125 (40%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
++ F+ G V + P + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 483
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 484 GKLRG 498
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 35.5 bits (78), Expect = 2.6
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Frame = +1
Query: 250 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 429
K RRI EL VQK N + + + ++ AE + +L ++ R+A
Sbjct: 77 KPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIAGQLRNRVSFRKAIKK 136
Query: 430 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPCNDYVNTATRHVLLRQ 603
+ ++ +G +V ++G++ G+ ++++ +G + + + DY + R +
Sbjct: 137 AIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYRVRTI---Y 193
Query: 604 GVLGIKVKIML 636
GVLGIK+ I +
Sbjct: 194 GVLGIKIWIFV 204
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 35.5 bits (78), Expect = 2.6
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +1
Query: 280 VVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA 459
+V K + ++ V L +V A+ A+++ +L + RR ++ +++GA
Sbjct: 91 LVAKLKELTQKDVNLNVLEVKNSDKIALLIAQNMAEQLENRMFFRRVQKMAIQKALKAGA 150
Query: 460 RGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 630
+G + ++SG+L G + A+S +G + +H+ DY A GVLGIKV I
Sbjct: 151 KGVKTLISGRLGGAEIARSEGHAEGRVPLHTLRADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1;
Caulobacter vibrioides|Rep: Putative uncharacterized
protein - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 1026
Score = 35.1 bits (77), Expect = 3.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 780 DRLRQRRGREGAHFAGRLEGHGLVLGLCHQD 688
DR R+ GR+GA GRL G GL +G+ H +
Sbjct: 491 DRRRRPAGRDGAPVIGRLAGGGLAIGVAHAE 521
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 35.1 bits (77), Expect = 3.5
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +3
Query: 588 CASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPR 728
CAS RS R Q Q P P A RP PG APR
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 34.7 bits (76), Expect = 4.6
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +1
Query: 112 VFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQK 291
+FK+E FL+ L+E + ++ RS I R L +K + E+ + ++
Sbjct: 228 IFKSEREIFLSRTLSEFYNESLNA-ISIARSNFIAQLNRVNESL-QKAQSPEEVARLQEE 285
Query: 292 RFNIPEQSVELYAEKVATR 348
RFN + +LYAE++ R
Sbjct: 286 RFNYLKSLTQLYAEELKIR 304
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 5.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 477
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 478 V 480
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 5.2
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +1
Query: 460 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 6.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 366 PGRISKIQAYRRSRCTSCLLWCSPFHH 446
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia
xyli subsp. xyli|Rep: Serine/threonine kinase -
Leifsonia xyli subsp. xyli
Length = 974
Score = 34.3 bits (75), Expect = 6.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 618 QGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPR 728
+G A G A + PE R H GD A G RAPR
Sbjct: 830 RGARDAAAGAAERHGPEWGPARDHGGDAAAGAVRAPR 866
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.3 bits (75), Expect = 6.0
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 238 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 375
+LG+ G+R+RE+ V R NIP QS E +E + G IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 34.3 bits (75), Expect = 6.0
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 2/169 (1%)
Frame = +1
Query: 124 ELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKGRRIRELTSVVQKRFNI 303
++ ++ L + S V + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 304 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 483
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 484 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 624
G+L G + A+ + +G + +H+ DY T GV G+KV
Sbjct: 155 GRLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 33.9 bits (74), Expect = 8.0
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 211 IIMATRXQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 387
+I TR S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 388 KLIGGLAVRRACYGVLRFIMESGARG 465
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,859,974
Number of Sequences: 1657284
Number of extensions: 15249179
Number of successful extensions: 47782
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 45006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47651
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 114659520126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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