Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H24
         (1154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   335   3e-92
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   2.7  
Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical pr...    30   3.6  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    30   3.6  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    30   3.6  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   6.2  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  335 bits (824), Expect = 3e-92
 Identities = 160/222 (72%), Positives = 186/222 (83%)
 Frame = +1

Query: 76  NLSKXRKFVGXGVFKAELNXFLTXXLAEXGXSGVEVRVTPIRSEXIIMATRXQSVLGEKG 255
           N++K +K V  G+FKAELN FL   LAE G SGVEVR TP R+E IIMATR Q+VLGE+G
Sbjct: 6   NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65

Query: 256 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 435
           RRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 66  RRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125

Query: 436 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 615
           RFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LRQGV+G
Sbjct: 126 RFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIG 185

Query: 616 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 741
           IKVKIMLP+D +G+NGP+   PDH+ + EP++E +P EP S+
Sbjct: 186 IKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 570  QHCYQTCASQTRSTRNQGQNHVA 638
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 570  QHCYQTCASQTRSTRNQGQNHVA 638
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical
           protein F40F8.1 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 804 SYILSDSGDRLRQRRGREGAHFAGRLEGH 718
           +Y+   +GD LR  R REG+ F   +E H
Sbjct: 27  NYVHLSAGDLLRAERQREGSEFGALIESH 55


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 308 SGMLNRFCTTEVSSRILRPFSPSTLCXLVAIIMXSERMGVTRTSTPEXPXSASXXVRNXL 129
           + M+ RF T  +      PF   T C +   +  S  + V+ T TP    S S   ++  
Sbjct: 237 TSMVRRFTTPFICEFCQMPFQKETTCYIHQKLCKSRFVNVSTTDTPIPKSSKSSPGKSTP 296

Query: 128 SSALKTP 108
           + AL +P
Sbjct: 297 TFALPSP 303


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 308 SGMLNRFCTTEVSSRILRPFSPSTLCXLVAIIMXSERMGVTRTSTPEXPXSASXXVRNXL 129
           + M+ RF T  +      PF   T C +   +  S  + V+ T TP    S S   ++  
Sbjct: 240 TSMVRRFTTPFICEFCQMPFQKETTCYIHQKLCKSRFVNVSTTDTPIPKSSKSSPGKSTP 299

Query: 128 SSALKTP 108
           + AL +P
Sbjct: 300 TFALPSP 306


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 564 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 388
           ++TR   + +E+IY L      TT+      FTTT    H +  NTI+S + +  + K+
Sbjct: 89  LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 235 SVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 348
           S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 398 SIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,175,289
Number of Sequences: 27780
Number of extensions: 353910
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3140771858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)