Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H23
         (1236 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   8.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 370 PPPPPPP 350
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 369 PPPPPPP 349
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 371 APPPPPP 351
           APPPPPP
Sbjct: 730 APPPPPP 736


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +1

Query: 847 PPXXPPPPPGXXXXXKXXXPPPPPPXXXXGXPAXPPXXXXPPP 975
           P   PPPPP          P P       G P   P     PP
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPP 201


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 675 PPRXPGXXGGGXPPPQ 628
           P R  G  GGG  PPQ
Sbjct: 4   PGRMMGHTGGGLMPPQ 19


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.156    0.562 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,219
Number of Sequences: 336
Number of extensions: 6511
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36171872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)