Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H23
         (1236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 934 GXPAXPPXXXXPPPPPXXXG 993
           G    PP    PPPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 371 APPPPPP 351
           APPPPPP
Sbjct: 342 APPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 370  PPPPPPP 350
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 369  PPPPPPP 349
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 370  PPPPPPP 350
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 369  PPPPPPP 349
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +1

Query: 751 GXPAXXPXPPHPPXXGXXFXPPRXXXXXXXXXPPXXPP 864
           G P   P P   P       PP          PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 824 GGGGGXRXPXXXPP-PXRGXXXGXKXGXPPXPPP 922
           G  G    P   P  P RG       G PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 408 APXXGGXXXXXGGPPPPPPP 349
           AP  G       GPPP  PP
Sbjct: 33  APQRGSPPNPSQGPPPGGPP 52


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 376  GGPPPPPPP 350
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 375  GGPPPPPPP 349
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 369 PPPPPPPXXXXXW 331
           P PPPPP     W
Sbjct: 374 PLPPPPPIRGGEW 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.156    0.562 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,069
Number of Sequences: 438
Number of extensions: 15802
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42142113
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)