Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H21
         (1211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   219   5e-58
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   219   5e-58
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   6e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.74 
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    26   9.2  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   9.2  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  219 bits (536), Expect = 5e-58
 Identities = 96/128 (75%), Positives = 117/128 (91%)
 Frame = +2

Query: 80  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 259
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 260 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 439
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 440 ECADLWPR 463
           ECADLWPR
Sbjct: 123 ECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  219 bits (536), Expect = 5e-58
 Identities = 96/128 (75%), Positives = 117/128 (91%)
 Frame = +2

Query: 80  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 259
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++A
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62

Query: 260 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 439
           TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63  TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122

Query: 440 ECADLWPR 463
           ECADLWPR
Sbjct: 123 ECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 6e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +2

Query: 233 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 385
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 386 VNNKGEMKGSAITGPVAKE 442
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = -3

Query: 384  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 205
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 204  IPWTAITYRFFAPVLSAQLITAPTGRP 124
             P +A      A  +++ LI +P   P
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSPAAIP 862


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 62  YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 241
           YNK+ K+    +      ++ G    AVI      G KN+  ++V   +  L R      
Sbjct: 96  YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155

Query: 242 GDMIVATVKK 271
            + ++  V K
Sbjct: 156 VEFVIGAVDK 165


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 266 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 376
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,479
Number of Sequences: 5004
Number of extensions: 67143
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)