Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H19
         (1271 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    66   2e-09
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    62   4e-08
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    61   7e-08
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    48   4e-04
UniRef50_A2F502 Cluster: Formin Homology 2 Domain containing pro...    37   1.3  
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    36   3.0  
UniRef50_Q9M291 Cluster: Protein transport protein Sec24-like CE...    36   3.0  
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    35   5.2  
UniRef50_Q5CW10 Cluster: RRP5 like protein involved in rRNA biog...    34   6.8  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 66.1 bits (154), Expect = 2e-09
 Identities = 34/52 (65%), Positives = 34/52 (65%)
 Frame = +3

Query: 774 SKXPGTVKXPXGXRFXIGXAPLTSITKIDAXVRGGEXRXDYKDXXRXPLEAP 929
           SK   T       RF IG APLTSITKIDA VRGGE R DYKD  R PLEAP
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP 53


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 61.7 bits (143), Expect = 4e-08
 Identities = 41/100 (41%), Positives = 49/100 (49%)
 Frame = +3

Query: 630 GALPXPRXXTRXARXXGXGERXQXXQRX*XGXPQNXGITQERPCEQKASKXPGTVKXPXG 809
           G +P PR  TR AR  G GER +       G       T++   +++          P  
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRLTD----GDGNFLEDTRKTLSKEEIR--------PRR 81

Query: 810 XRFXIGXAPLTSITKIDAXVRGGEXRXDYKDXXRXPLEAP 929
            RF IG APLTSI K DA + GGE R DYKD  R PL AP
Sbjct: 82  SRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAP 121


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 60.9 bits (141), Expect = 7e-08
 Identities = 29/46 (63%), Positives = 31/46 (67%)
 Frame = +3

Query: 792 VKXPXGXRFXIGXAPLTSITKIDAXVRGGEXRXDYKDXXRXPLEAP 929
           V+ P   RF IG APLTSITK DA + GGE R DYKD  R PL AP
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAP 89


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 48.4 bits (110), Expect = 4e-04
 Identities = 25/36 (69%), Positives = 25/36 (69%)
 Frame = +2

Query: 653 TDSXRXXVRXRRAVSAXXKXVXRXSXESGDNAGKTM 760
           TDS R  VR RRAVSA  K V R S ESGDNAGK M
Sbjct: 24  TDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A2F502 Cluster: Formin Homology 2 Domain containing protein;
            n=2; Trichomonas vaginalis G3|Rep: Formin Homology 2
            Domain containing protein - Trichomonas vaginalis G3
          Length = 1139

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 28/117 (23%), Positives = 31/117 (26%)
 Frame = +1

Query: 847  SQKSTLXSEXAXPDXTIKXPGVXPWKXPRAXXXXDPAXYXIPVRPXXLRXGXXXSPXPXP 1026
            S+K+   S    P  T   P   P           P    +P  P          P P P
Sbjct: 520  SEKADSASVPPPPSGTAPPPPPPPPGLVPPPPPPPPGASLVPPPPPPPPGAPGLVPSPPP 579

Query: 1027 GXVSXFXGXXVRPXXGXGXXNPPXQPXRGALXXXXXXGXPPGKTXXFPPXXXPXGXG 1197
            G           P  G     PP  P  GA         PP      PP   P G G
Sbjct: 580  GAAGLVPPPPPPPPPGASLVPPPPPPPPGAAGLVPPPPPPPPGAGGIPPPPPPPGAG 636


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 35.5 bits (78), Expect = 3.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 726 PQNXGITQERPCEQKASKXPGTVKXPXGXRFXIGXAPLTSITKIDAXVRGGEXRXDYKDX 905
           P+N  I  +R   + + + P T        F     PLT+ITKI    +  + + +YK  
Sbjct: 39  PRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYT 98

Query: 906 XRXPLEAP 929
              PL++P
Sbjct: 99  TPFPLQSP 106


>UniRef50_Q9M291 Cluster: Protein transport protein Sec24-like CEF;
            n=4; Arabidopsis thaliana|Rep: Protein transport protein
            Sec24-like CEF - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1097

 Score = 35.5 bits (78), Expect = 3.0
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 990  SGRXGAFPLXXPXXGFXXXGXGRPPPXXGXVXXPPRSAXPGGP 1118
            SG  G  P   P  G    G G PPP    +  PP S  PGGP
Sbjct: 151  SGPPGGVP-SGPPSGARPIGFGSPPPMGPGMSMPPPSGMPGGP 192


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 34.7 bits (76), Expect = 5.2
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -1

Query: 782 PFAGLLLTWSFLRYPXILXXTXLPPLXXLXPL 687
           P    LLT SF  YP IL  T LPPL  L PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q5CW10 Cluster: RRP5 like protein involved in rRNA
           biogenesis with 7 S1 domains and 5 HAT repeats; n=4;
           Cryptosporidium|Rep: RRP5 like protein involved in rRNA
           biogenesis with 7 S1 domains and 5 HAT repeats -
           Cryptosporidium parvum Iowa II
          Length = 2002

 Score = 34.3 bits (75), Expect = 6.8
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = -2

Query: 295 LKCKFLLFYKIKHIFTRELLLLISVKLFVIISVKNTIKSNRVLNI-LY*NMSKLNIVQKL 119
           LK   LLF  I H+  +EL++ +      IIS++NT++ +R + I L+  + K ++  + 
Sbjct: 47  LKLGTLLFGVIDHVSEKELIISLPGSNTAIISIENTLEDSRTIPIELFQELKKKSLEDRF 106

Query: 118 AV 113
           +V
Sbjct: 107 SV 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,321,675
Number of Sequences: 1657284
Number of extensions: 10770832
Number of successful extensions: 21579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21125
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 129579762880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)