Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H19
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   3.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   3.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   3.0  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    30   4.0  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    30   4.0  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    29   7.0  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    29   9.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +1

Query: 1063 PXXGXGXXNPPXQPXRGALXXXXXXGXPPGKTXXF--PPXXXPXGXGXXXXGXXGGXXXX 1236
            P  G G   PP +  R A       G PP  +     PP   P            G    
Sbjct: 322  PPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG 381

Query: 1237 XRGGPXXGPXK 1269
             RGGP  GP K
Sbjct: 382  PRGGPRGGPRK 392


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +1

Query: 1063 PXXGXGXXNPPXQPXRGALXXXXXXGXPPGKTXXF--PPXXXPXGXGXXXXGXXGGXXXX 1236
            P  G G   PP +  R A       G PP  +     PP   P            G    
Sbjct: 343  PPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG 402

Query: 1237 XRGGPXXGPXK 1269
             RGGP  GP K
Sbjct: 403  PRGGPRGGPRK 413


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +1

Query: 1063 PXXGXGXXNPPXQPXRGALXXXXXXGXPPGKTXXF--PPXXXPXGXGXXXXGXXGGXXXX 1236
            P  G G   PP +  R A       G PP  +     PP   P            G    
Sbjct: 328  PPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG 387

Query: 1237 XRGGPXXGPXK 1269
             RGGP  GP K
Sbjct: 388  PRGGPRGGPRK 398


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical protein
            B0035.1b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 18/64 (28%), Positives = 21/64 (32%)
 Frame = +3

Query: 987  PSGRXGAFPLXXPXXGFXXXGXGRPPPXXGXVXXPPRSAXPGGPXXXXXXWXPPRXNPXF 1166
            P G  GA+P           G   PPP       PPR     GP        PP+ +   
Sbjct: 152  PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRFD 211

Query: 1167 SPXG 1178
             P G
Sbjct: 212  QPDG 215


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical protein
            B0035.1a protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 18/64 (28%), Positives = 21/64 (32%)
 Frame = +3

Query: 987  PSGRXGAFPLXXPXXGFXXXGXGRPPPXXGXVXXPPRSAXPGGPXXXXXXWXPPRXNPXF 1166
            P G  GA+P           G   PPP       PPR     GP        PP+ +   
Sbjct: 152  PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRFD 211

Query: 1167 SPXG 1178
             P G
Sbjct: 212  QPDG 215


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein 111
            protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = +2

Query: 1052 GXSAPXXGXGXXTPPXSRTGGPLXGXXXXEXPPXKPXFFPPXXXPXVPGXP 1204
            G   P    G   PP     GP  G      PP KP    P   P  PG P
Sbjct: 220  GYPGPRGAPGPVGPPGVAEEGP-DGLPGPAGPPGKPGMPGPMGTPGGPGEP 269


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
            protein ZK973.9 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 1011 PLXXPXXGFXXXGXGRPPPXXGXVXXPPRSAXPG 1112
            P   P  G      G PPP  G    PP  A PG
Sbjct: 197  PYPYPPQGMPGYPGGPPPPPHGYEGYPPPGAQPG 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,667
Number of Sequences: 27780
Number of extensions: 272791
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)