Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H16
         (1185 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   1.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   1.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   2.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.9  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 480 GNMAAFDMDDPKSIVSPGGVGFDINCGVR 566
           GN  AFD  DPK +        +++CG R
Sbjct: 55  GNGLAFDASDPKFLTENCDYIHNVDCGDR 83


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 480 GNMAAFDMDDPKSIVSPGGVGFDINCGVR 566
           GN  AFD  DPK +        +++CG R
Sbjct: 55  GNGLAFDASDPKFLTENCDYIHNVDCGDR 83


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 290 FNXHIWLEAFFNAPTIWI 237
           FN H WL   F+  T+W+
Sbjct: 299 FNPHKWLLVNFDCSTMWL 316


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 786 MLNADPSKVSLRAKKRGLPQLGTL 857
           +LN     +SLRA+K+ +  LGT+
Sbjct: 272 VLNKHIDNISLRARKQVVLMLGTV 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,912
Number of Sequences: 336
Number of extensions: 5526
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34640592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)