Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H16
         (1185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   1.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    29   1.7  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    28   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   6.7  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    26   8.9  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 532 PGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPPDIP 359
           P DTI  G+S++++      +  PE    NP+    +   A   A   T G NPP++P
Sbjct: 246 PSDTIPPGASMARSD----PSQVPE---SNPSAAAAVAAAAVAAAANLTNGVNPPEVP 296


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -3

Query: 811 TFDGSAFNILPYSSQCSLSSAQT*PSLRDQSIPISNASSKSRAFIGIIPLEPTPTGIWSN 632
           +F GSA ++ P  S    S  Q+ P +    IP +  +       G IP+   PT  +S 
Sbjct: 300 SFFGSA-SVRPTVSPIGTSFRQSLPDISAFGIPKTETNPSEVVAPGTIPISVLPTSNFSA 358

Query: 631 KL*ANCSLIGR 599
              AN SLI +
Sbjct: 359 ATPANPSLINQ 369


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 798 QHSTFFHILHSVPYLRPKHNLPLET 724
           QH T+  + H +P  +P  N+PL T
Sbjct: 213 QHETYMKLAHEMPLGKPYFNMPLLT 237


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 19/65 (29%), Positives = 23/65 (35%)
 Frame = -3

Query: 547 SNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPP 368
           S P PP    +L    S      I  P P      P+  P IP      A    P ++PP
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185

Query: 367 DIPGL 353
             P L
Sbjct: 186 SAPSL 190


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = -3

Query: 799 SAFNILPYSSQCSLSSAQT*PSLRDQSIPISNASSKSRAFIGIIPLEPTPTGIWSNKL*A 620
           S+F+  P+ S    S+  +   + + S+P ++ S+ +     I    P PT + +N L  
Sbjct: 159 SSFHSAPFLSSYGSSNDPSQERVNEYSLPSNSNSTYTTPLQSINNEHPLPTVLENNALLN 218

Query: 619 NCSLIGRTSFSCKFVLNKRTPQFISNPTPPGDTIDLGSSISKAAIFPIA---NPYPE 458
           N           +  LN+   +   +P+P  ++ D  S   +++   IA   N +PE
Sbjct: 219 NSGNSPSLINHLRQYLNQDFSRLHQSPSPIPNSNDNDSQTRRSSWSSIASAFNDFPE 275


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 591 KDVLPIKEQLAQ-SLFDHIPVGVGSKGIIPMNARDLE-EALEMGMDWSLREGY 743
           KD LP +  ++  S  D I  G    GI  M AR+++ EA + G+ WS  +GY
Sbjct: 67  KDRLPARRPVSSNSWLDSI--GAYFVGI-DMTARNIQNEAKKKGLPWSFAKGY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,048,521
Number of Sequences: 5004
Number of extensions: 85096
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)