Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H16
         (1185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0094 - 1142271-1142570,1142658-1143458                           33   0.33 
09_02_0202 + 5735613-5736170                                           31   1.8  
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    31   2.3  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     30   4.1  
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    30   4.1  
02_02_0371 - 9513742-9514293,9514784-9514923,9515217-9515556,951...    30   4.1  
02_05_1252 + 35261135-35261935                                         29   9.4  

>10_01_0094 - 1142271-1142570,1142658-1143458
          Length = 366

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = +3

Query: 381 PGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAF-DMDDPKSIVSPGGVGFDINC 557
           P +K    V  LP IV  +   P  HS   F  G++  F    D   +        D +C
Sbjct: 224 PNIK--CTVLDLPHIVAEA---PATHSNIQFIGGDLFKFIPAADVVLLKCLLHCWQDDDC 278

Query: 558 GVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE 737
            V++LR     K+ +P ++   + +   + VG+GS+ I+P   + L +   M +D   RE
Sbjct: 279 -VKILRLC---KEAIPARDAGGKVIIIEVVVGIGSEEIVPKEMQLLFDVFMMYIDGIERE 334

Query: 738 GYVW 749
            Y W
Sbjct: 335 EYEW 338


>09_02_0202 + 5735613-5736170
          Length = 185

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 399 ANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGG 536
           A+ AA  G+V   V  P   +G G A+G  AA    D  ++ +PGG
Sbjct: 113 AHTAAGAGVVNSGVAPPGAIAGAGGALGRPAAAAGGDGSAVDAPGG 158


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = -3

Query: 643 IWSNKL*ANCSLIGRTSFSCKFVLNKRTPQFISNPTPPGDTIDLGSSISKAAIFPIANPY 464
           +W  +     S+  +T       L  RTP+F++NPT  G++ + G +++ A     A   
Sbjct: 512 VWDQEAGRYVSVPAQTRAVPGLDLPARTPRFLANPT--GESSNHGKNLAPANASSSAI-- 567

Query: 463 PE*TSGNPTDRPTIPGKAATLA--ICFTPGRN 374
              +SG P++R T  G++      I  T GRN
Sbjct: 568 ---SSGQPSERLTYTGQSIFFGGPILSTSGRN 596


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 642 IPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWA---EDKEHC-EEYGRM 788
           IP       ++ +   D  + L    DW   EGY+W+   +++EHC +++ R+
Sbjct: 116 IPAPPPPPSLVKVLDMDRAKTLIKEQDWDAVEGYIWSILCDNQEHCVDDFARL 168


>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 574 LNKRTPQFISNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAA 407
           +   TP F++ P  PGD + +   ISK A  P  +P P  T  +  + P  P + A
Sbjct: 658 MGNNTPSFMA-PARPGDLLQI---ISKPAQPPAMSPMPLLTGSDVAEPPLPPARTA 709


>02_02_0371 -
           9513742-9514293,9514784-9514923,9515217-9515556,
           9515659-9515721,9515812-9515910,9516016-9516126,
           9517114-9517257
          Length = 482

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 636 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVS 815
           +HIP G G++ +  +  R +EE  +     S REG   AE +   E   +++     K+ 
Sbjct: 159 NHIPGGAGNEKLQKLLTRHMEEQRKRKALMSCREGKAMAEFE---EAISQIVGLQDLKMQ 215

Query: 816 LRAKKRGL 839
           LR   RG+
Sbjct: 216 LRRWARGM 223


>02_05_1252 + 35261135-35261935
          Length = 266

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 273 PNMXVEGVFYVNSTLEQLMLEELRNCCXPGMSGGFLP---GVKQIANVAALP 419
           P M +   F  N+T E+L LEE      P M GG  P   G   IA+ +ALP
Sbjct: 189 PVMVIASTF-ANATYERLPLEEEEEGSGPPMPGGAEPLMAGGHGIADPSALP 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,038,200
Number of Sequences: 37544
Number of extensions: 545608
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)