Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H15
         (1267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   108   2e-24
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   108   2e-24
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   108   2e-24
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    35   0.021
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   2.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   2.4  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  108 bits (259), Expect = 2e-24
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = +3

Query: 258 ITXPALRRLARSGGVXRISGLXYSAPRGVLKVFLENVXRAAVTYTEHAKRKPVTAMDVVY 437
           IT PA+RRLAR GGV RIS L Y   R VLK+FLENV R AVTYTEHAKRK VT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 438 ALKRQGRTLY 467
           +LKRQGRT+Y
Sbjct: 90  SLKRQGRTIY 99


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  108 bits (259), Expect = 2e-24
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = +3

Query: 258 ITXPALRRLARSGGVXRISGLXYSAPRGVLKVFLENVXRAAVTYTEHAKRKPVTAMDVVY 437
           IT PA+RRLAR GGV RIS L Y   R VLK+FLENV R AVTYTEHAKRK VT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 438 ALKRQGRTLY 467
           +LKRQGRT+Y
Sbjct: 90  SLKRQGRTIY 99


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  108 bits (259), Expect = 2e-24
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = +3

Query: 258 ITXPALRRLARSGGVXRISGLXYSAPRGVLKVFLENVXRAAVTYTEHAKRKPVTAMDVVY 437
           IT PA+RRLAR GGV RIS L Y   R VLK+FLENV R AVTYTEHAKRK VT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 438 ALKRQGRTLY 467
           +LKRQGRT+Y
Sbjct: 90  SLKRQGRTIY 99


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 273 LRRLARSGGVXRISGLXYSAPRGVLKVFLENVXRAAVTYTEHAKRKPVTAMDVVYALKRQ 452
           +R+LA S    +I+G          ++F + +      + +HA RK +   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -1

Query: 790 LKRAFVCLFVFENEKFNNNQTNQRHLRLIYNINDSKKFLKHVSRW 656
           L+    C     N   N  ++   H R  Y   D K ++KH   W
Sbjct: 562 LRNLLTCAVQTANAALNRKESRGAHAREDYPERDDKNWIKHTLTW 606


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 334 PAAFSKCSSKTXSAPLSHTPNTPSGSPSPL 423
           P+AF+K  ++  S PLS   NT +  P+ L
Sbjct: 539 PSAFTKAGNEALSVPLSGARNTAASRPTNL 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,195
Number of Sequences: 5004
Number of extensions: 32785
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)