Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H14
         (1180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    31   0.41 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.95 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   1.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    28   2.2  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   2.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   8.8  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 262 VKYYLIYSGKSFFDYFDVVIILIDVY-PFA 176
           VK   I+ G+ + DYFD +I L +VY PFA
Sbjct: 154 VKLAAIFGGQGYEDYFDELIELYEVYAPFA 183


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 365 DSIRNATGLAYDRSKNRIYVGGSDGLFFISDANKVPE 475
           + ++ A  LA D S N   +    GLF ++ ANK+PE
Sbjct: 838 NEVKPANLLAEDLSDNEDDIDRKQGLFSLAKANKIPE 874


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect(2) = 1.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 451 NEKQTVRAADVNAIFRSVICQTRSVSDTI 365
           NE   ++ A   A+  S++C+TR +   I
Sbjct: 20  NESAKIKLAYAKALEESILCETRKIEQEI 48



 Score = 22.2 bits (45), Expect(2) = 1.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 625 EHQSVNLYIL*LHNRNSHAIIKL 557
           +   V LY + L NRN  A IKL
Sbjct: 5   QDNEVELYSIDLKNRNESAKIKL 27


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -2

Query: 780 YRPFFVQT*GL*CISVAMLVTE*PSCILITVVPN*TRNSVSLSKNSILLPSSSIRASTCT 601
           Y+ F  +  G  C+    + ++      IT+ PN   N VSLS  ++L  SS + +++  
Sbjct: 32  YKDFVRRDDGDTCLRYTTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQ 91

Query: 600 FCNSITGTVT 571
           F ++   T +
Sbjct: 92  FTSNNVSTTS 101


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 167 DEYCKGIYIDQNYYNVEIIKEGLTRIYQIVFNDNENTLYFTFDQLAYVPTRQLGYINIAT 346
           D+  + I   QNY ++  +  G  R Y   F   E  + F      Y+  ++ G+ + AT
Sbjct: 253 DDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPD-GYLTKQEKGWTS-AT 310

Query: 347 KKTGIIDSI 373
           + TG  D I
Sbjct: 311 EHTGSADQI 319


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 542  NRKALKFDNGVTVPVMELQNVQVDALMLDDGNNILFLDN 658
            N++ +K   G+   +++ +N  ++    ++GN +LF DN
Sbjct: 1649 NKQIIKLYPGIRSLIVDTENTNINGCTTNEGNELLF-DN 1686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,709
Number of Sequences: 5004
Number of extensions: 75183
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)