Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_H14
(1180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 36 0.082
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 31 1.3
05_05_0248 + 23598461-23598652,23599600-23599744,23599816-235999... 29 5.4
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 29 5.4
01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417 29 7.1
12_02_0424 + 18949876-18950136,18951467-18951614,18951705-189518... 29 9.4
04_01_0196 + 2287911-2288278,2289187-2289838 29 9.4
04_01_0131 - 1433821-1434564,1435509-1435751 29 9.4
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 29 9.4
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 35.5 bits (78), Expect = 0.082
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 293 DQLAYVPTRQLGYINIATKKTGIIDSIRNATGLAYDRSKNRIYVGGSDGLFFI 451
D + R+ G + +T ++ + D++ + T L YD +N IY G S GL +
Sbjct: 565 DPTLTIAPRKRGDSSRSTIRSTVSDALEDITALFYDEDRNEIYTGNSKGLVHV 617
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 772 IFRANVRFIMYICGYASNGITFVYI 698
IFR+NV+ +CGYA++G+ F +I
Sbjct: 308 IFRSNVKPTAQLCGYAADGLGFFHI 332
>05_05_0248 +
23598461-23598652,23599600-23599744,23599816-23599966,
23600049-23600174,23600253-23600333,23600706-23600898,
23600990-23601260,23601807-23602000,23602086-23602105,
23602352-23602394
Length = 471
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 362 IDSIRNATGLAYDRSKNRIYVGGSDGLFFISDANK 466
++++ + T L YD ++ IY G GL + A K
Sbjct: 423 LEALEDITALYYDEERDEIYTGNRQGLVHVVPATK 457
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 29.5 bits (63), Expect = 5.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 DQNYYNVEIIKEGLTRIYQIVFNDNENTLYFTFDQLAYV-PTRQLGYINIATKKTGIIDS 370
D +YY +IKE +T+++ F ++ D L Y R++G T+ T ++D
Sbjct: 844 DSHYYIHPLIKEKMTQLWDNTFKQDKLAPCHPEDPLCYPDERRRVGSSIKLTETTDVMDQ 903
Query: 371 IRNATGL 391
+ A L
Sbjct: 904 VSRAKSL 910
>01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417
Length = 476
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +2
Query: 623 LDDGNNILFLDNETLFRVQLGTTVINIHEGYSVTSIATDIHY---KPYVCTKNGLYAYNK 793
LD G N L + NET +V + + SV + +H+ K + + + L + +
Sbjct: 290 LDTGINTLVI-NETTVKVNTNISFKTLIP--SVKVLGLSVHFGVRKEALMSISFLRCFPE 346
Query: 794 YK-FALDKKSDKLANLRALTFNNRNEPIYIAVGHIVKLIYNPVP 922
+ + K+DK + +F + +P+ H+ KL+++ +P
Sbjct: 347 VETLHITSKTDKASEAEQFSFWGKVDPVECVTSHLKKLVFHGMP 390
>12_02_0424 +
18949876-18950136,18951467-18951614,18951705-18951855,
18952049-18952174,18952258-18952338,18952426-18952618,
18952693-18952957,18953239-18953480
Length = 488
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 359 IIDSIRNATGLAYDRSKNRIYVGGSDGLFFI 451
I +++ + T L YD +N IY G GL +
Sbjct: 455 IPEALEDVTALFYDEDRNEIYTGNRHGLVHV 485
>04_01_0196 + 2287911-2288278,2289187-2289838
Length = 339
Score = 28.7 bits (61), Expect = 9.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 581 PVMELQNVQVDALMLDDG-NNILFLDNETLFRVQLGTTVINIHEGYSVTSIATDIHYKPY 757
P L + + + + D G + I LDN+ L TTV+ EG +T+ + Y
Sbjct: 152 PKNVLLDKEYNVKLADFGLSRIAKLDNDP---TSLQTTVVGTVEGCVLTTSVGPVDYMDP 208
Query: 758 VCTKNGLYAYNKY 796
C K+G +N Y
Sbjct: 209 QCKKDGKVKFNPY 221
>04_01_0131 - 1433821-1434564,1435509-1435751
Length = 328
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 635 NNILFLDNETLFRVQLGTTVINIHEGYSVTSIATDIHYKPYVCTKNGLYAYNKY 796
+ I LDN+ L TTV+ EG +T+ + Y C K+G +N Y
Sbjct: 153 SRIAKLDNDP---TSLQTTVVGTVEGCVLTTAVGPVDYMDPQCKKDGKVKFNPY 203
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 28.7 bits (61), Expect = 9.4
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 419 YVGGSDGLFFISDANKVPERLPVVENIRYLFFKDVLYMINNNRKALKFDNGVTVPVM-EL 595
++GGS + A K+ + L + E + V +++ NR+++ D G+ +M E+
Sbjct: 105 FLGGSQSSYTFFQALKLSDELNLNE------IECVRLLVDANRESVVLDQGLDADLMYEI 158
Query: 596 QNVQVDALMLDD-GNNILFLDNE 661
QN Q++AL ++ G I+ L E
Sbjct: 159 QN-QMEALFIEGLGQRIITLVKE 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,848,851
Number of Sequences: 37544
Number of extensions: 397305
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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