Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H14
         (1180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    29   6.4  
AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    29   8.4  
AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical ...    29   8.4  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    29   8.4  

>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 582 RLWSYKMYKLTL*CSTMVIIYCFWIMKRYFAFNWALQLLIYTKVIPLL 725
           R++ Y M+   L  S +V I C  I+K+Y  ++W L L      +PL+
Sbjct: 556 RVFLYVMWAFFLPISCLVSI-CSIIVKKYQIYHWPLVLYAAISALPLI 602


>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 CFSLVTRTKYQ-KDYLLLKILGICSLKMFCI*LTITG 548
           CF  + RTK +   Y L+ ILGI  L   CI   +TG
Sbjct: 57  CFIAIVRTKTRIPAYQLMLILGILDLISLCINSLVTG 93


>AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical
           protein T21H3.5 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 666 YFAFNWALQLLIYTKVIPLLA*PQIYIINLTFARKMVCTPITNTS 800
           YF  +W+  LL++T  IP +     +I++L F  K     I N S
Sbjct: 191 YFVVDWSFSLLVFTFTIPYIT---CFIVSLVF-HKFYMKSIRNVS 231


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 CFSLVTRTKYQ-KDYLLLKILGICSLKMFCI*LTITG 548
           CF  + RTK +   Y L+ ILGI  L   CI   +TG
Sbjct: 57  CFIAIVRTKTRIPAYQLMLILGILDLISLCINSLVTG 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,352
Number of Sequences: 27780
Number of extensions: 417662
Number of successful extensions: 1050
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)