Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H13
         (1241 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set (trithorax/...    39   0.006
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    31   1.7  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    31   1.7  
Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    29   6.8  

>U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 1, isoform
           a protein.
          Length = 242

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 24/46 (52%), Positives = 27/46 (58%)
 Frame = +1

Query: 706 KTVKVEKVSNGNANHKLTEFFPVRRSVRKTSKCVMAEKMRDLERAV 843
           K V V+ VSN    HK+TEFF VRRS RKTSK +  E    L   V
Sbjct: 56  KGVSVKDVSN----HKITEFFQVRRSNRKTSKQISDEAKHALRDTV 97


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 439  RKRRIITAIQPKTENEELSSEPPFKKTEQKSKPLKTSN 552
            +KRR+   I+   +NEE ++    K TE+K KP+K  N
Sbjct: 1223 KKRRLQDQIRRMKKNEEKAAHKVQKMTEKKVKPIKPPN 1260


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 439  RKRRIITAIQPKTENEELSSEPPFKKTEQKSKPLKTSN 552
            +KRR+   I+   +NEE ++    K TE+K KP+K  N
Sbjct: 1223 KKRRLQDQIRRMKKNEEKAAHKVQKMTEKKVKPIKPPN 1260


>Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical
           protein C17D12.7 protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 385 PHRIELCEXKPARPTRNYRKRRIITAIQPKTENEELS--SEPPFKKTEQKSKPLKTSN 552
           P R++LC+  P +  +  +K++I + I+ KT + +LS  SE    ++E+     K+++
Sbjct: 47  PQRLDLCQISPKKSEKKSKKKKIPSPIK-KTNDTKLSILSEKSEIRSEKHKNKCKSAD 103


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 17/173 (9%)
 Frame = +1

Query: 397 ELCEXKPARPTRNYRKRRIITAIQPKTENEELSSEP-PFKKTEQKSKPLKT-SNGISNMT 570
           E+C    + P ++Y K      +     N E+   P P   T  K    KT  +G SN T
Sbjct: 287 EICNDVQSYPGKHYDKNTSSNFVF----NFEIDEHPVPITPTSPKQNYEKTYKDGDSNQT 342

Query: 571 NG--HSLXXXXXXXXXXXXXSHKLTEYFKEEIKVPKVEPAVSPSPIEKTVKVEKVSNGNA 744
            G                  ++K TEYF   I   + +      P  ++   E ++NG A
Sbjct: 343 GGICEIEHSENVVESFEVLENNKKTEYFFNVINELRCDLQPEDVPCYRSRSKEHITNGMA 402

Query: 745 NHK-------------LTEFFPVRRSVRKTSKCVMAEKMRDLERAVREQREDG 864
           + K             L+EF     S  K    +  E++ D+E++ ++ R +G
Sbjct: 403 DFKNDMYSLKRETESNLSEFMDTYNSDFKNFTIMGTERVEDVEKSEQQIRING 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,915,227
Number of Sequences: 27780
Number of extensions: 349859
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)