Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H13
         (1241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          27   0.45 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      27   0.45 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 866 YPSSLCSLTALSKSLIFSAMTHFDVFLTLLLTGKNSVN 753
           YP  L  ++AL K  +F     FD+F    L  KN++N
Sbjct: 101 YPQLLREMSALFK--LFYHAKDFDIFFKTALWAKNNIN 136


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 866 YPSSLCSLTALSKSLIFSAMTHFDVFLTLLLTGKNSVN 753
           YP  L  ++AL K  +F     FD+F    L  KN++N
Sbjct: 101 YPQLLREMSALFK--LFYHAKDFDIFFKTALWAKNNIN 136


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 576 TLTEDTCCKGRDTCSGKPQINRVF 647
           T+  DTCC+GR T     +++R F
Sbjct: 343 TVQYDTCCQGRATAIYIDKVSRFF 366


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 421 RPTRNYRKRRIITAI-QPKTENEELSSEPPFKKTEQKSKPLKT 546
           RP R   K++ +  I    ++ EELS+ P FK  ++  K   T
Sbjct: 24  RPRRKLSKKQQMLGIWADDSDEEELSARPSFKTFDKGPKNYTT 66


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 268 LSXRLFSDVFFV*IFVLKPSRVEMVRVNTLMAVQXGVKXPHRIELCEXK 414
           +  R+F D+FF+ I  L+ + ++ +  N  + +       H +EL + K
Sbjct: 350 IDARMFKDLFFLQILDLRNNSIDRIESNAFLPLY----NLHTLELSDNK 394


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 848 SLTALSKSLIFSAMTHFDVFLTLL 777
           SLT+L+ SLIF+ +    + LTL+
Sbjct: 23  SLTSLASSLIFTILCILTLALTLV 46


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 848 SLTALSKSLIFSAMTHFDVFLTLL 777
           SLT+L+ SLIF+ +    + LTL+
Sbjct: 23  SLTSLASSLIFTILCILTLALTLV 46


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 848 SLTALSKSLIFSAMTHFDVFLTLL 777
           SLT+L+ SLIF+ +    + LTL+
Sbjct: 23  SLTSLASSLIFTILCILTLALTLV 46


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 848 SLTALSKSLIFSAMTHFDVFLTLL 777
           SLT+L+ SLIF+ +    + LTL+
Sbjct: 23  SLTSLASSLIFTILCILTLALTLV 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,870
Number of Sequences: 438
Number of extensions: 4959
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42382239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)