Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H10
         (1251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.44 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.77 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 20/63 (31%), Positives = 20/63 (31%)
 Frame = +3

Query: 777 PXKPPXXXXXPXPAXXKKXXPLXPLGXGGAXXXPPXGGXPXGXGPPPPXXGGXPXPPXXP 956
           P  PP     P PA      P      GG    PP  G      PPPP     P PP   
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPPAVS 786

Query: 957 XXG 965
             G
Sbjct: 787 AGG 789



 Score = 30.3 bits (65), Expect = 0.58
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 459 PPPXGXGXXXXGPPPXPPXKXPRPPXXXGGXGXXPP 566
           PPP   G    GPPP PP   P P    GG     P
Sbjct: 763 PPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +1

Query: 457 PPPPGXXGXXFXXPXPXPPXKXPXPRXSGGGXGXPPPXGGXXXXPK 594
           PPPP   G     P P PP   P P  S GG     P       PK
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 451 KXPPPPGXXGXXFXXPXPXPPXKXPXPRXSGGGXGXPPPXG 573
           K PPPP         P P P    P     GG    PPP G
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
 Frame = -3

Query: 976 PXXXPXXGXXGGXGXPPXLGGGGPXPXGXPP----XGGXXXAPPXPR 848
           P   P  G       PP + G GP P   PP     GG     P P+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +3

Query: 774 PPXKPPXXXXXPXPAXXKKXXPLXPLGXGGAXXXPPXGGXPXGX-GPPPP 920
           PP  P      P PA      P  P+  G     PP G    G   PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 566 GGGXPXPPPXXRGXGXFXGGXGXGXXXXXPXXPGGG 459
           GGG   PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -2

Query: 881 GGXXXXPPXPQGXKGXXFFXXGXXXXXXGXGGFXGGXPXXFXXPXGXAPPP 729
           GG    PP P G  G   F  G      G GGF GG       P G    P
Sbjct: 195 GGSGGPPPGPGGFGGFGGFG-GEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 532 GGRGFXXGGXGGGPXXXXPXPXGGGXF 452
           G  G   GG GGG     P P G G F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGF 210



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 532 GGRGFXXGGXGGGPXXXXPXPXGGG 458
           GG G   GG GGGP      P G G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 492 PKXXPPXPXGGGXFXXXKNXPPPPPPXXKK 403
           P   PP P     F      PPPPPP   K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 493 PXXXXPXPXGGGXFXXXXKXPPPPPPXXKKK 401
           P    P P     F    + PPPPPP   KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/70 (28%), Positives = 21/70 (30%)
 Frame = +3

Query: 747 PXXXKXPXXPPXKPPXXXXXPXPAXXKKXXPLXPLGXGGAXXXPPXGGXPXGXGPPPPXX 926
           P     P  PP  PP       P+         PL    A   PP    P G    PP  
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL-PPSAPIAPP---LPAGMPAAPPLP 470

Query: 927 GGXPXPPXXP 956
              P PP  P
Sbjct: 471 PAAPAPPPAP 480



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +2

Query: 461 PPXGXGGXXXGXPXPPPXXKXPXPG---XXGGGRXXPPP 568
           PP G G      P PPP  +    G       GR  PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
 Frame = -1

Query: 549 PPPXXPGXGXFXXGGGXGXPKXXPPXPX----GGGXFXXX---KNXPPPPPP 415
           PPP     G    G G       PP P       G        ++ PPPPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 496  PXPXPPXKXPXPRXSGGGXGXPPP 567
            P P P    P P+ S G    PPP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = +3

Query: 774  PPXKPPXXXXXPXPAXXKKXXPLXPLGXGGAXXXPPXGGXPXGXGPPPPXXGGXPXPP 947
            PP   P     P PA      P+ P    G    PP    P     P P  G  P PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPP---VPKPSVGVPPVPP 1212


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 166 KKKKKXXKKKXKXXKXKXKXKXKNKKKK*KXK 71
           KKKKK  KKK K    K +    + K++ K K
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,109
Number of Sequences: 5004
Number of extensions: 37889
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)