Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H10
         (1251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 916 GGGPXPXGXPPXGGXXXAPP 857
           G  P P   PP GG   APP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 459 PPPXGXGXXXXGPPPXPPXKXP 524
           PP    G    GPP  PP + P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 225 PPXGGXTGPXXXKKXXXXGPXP 290
           PP G  TGP         GP P
Sbjct: 413 PPTGATTGPNEIVTCTNCGPNP 434


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 225 PPXGGXTGPXXXKKXXXXGPXP 290
           PP G  TGP         GP P
Sbjct: 399 PPTGATTGPNEIVTCTNCGPNP 420


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 225 PPXGGXTGPXXXKKXXXXGPXP 290
           PP G  TGP         GP P
Sbjct: 433 PPTGATTGPNEIVTCTNCGPNP 454


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 225 PPXGGXTGPXXXKKXXXXGPXP 290
           PP G  TGP         GP P
Sbjct: 382 PPTGATTGPNEIVTCTNCGPNP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,008
Number of Sequences: 438
Number of extensions: 8238
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42742428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)