Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H09
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    80   5e-16
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   0.76 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    29   1.3  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   7.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   7.1  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 56/252 (22%), Positives = 114/252 (45%), Gaps = 3/252 (1%)
 Frame = +2

Query: 161 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 340
           L   T    VI +    F   V    +D++ V +F+A +    C +C+ +  E+  +ANS
Sbjct: 23  LNSKTDADGVIQITGRLFHRIVNGK-QDFTTVALFSADSSTMNCDVCRLIEPEFKALANS 81

Query: 341 FRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERA-GIH 517
           ++     ++ + F   DF +  ++FQ   + + P    F    KPK    +  + + G+ 
Sbjct: 82  YKLKYGLDSGIRFTYADFGKNKNLFQDFSIESVPNFWIF----KPKSIQAIHVDLSHGVT 137

Query: 518 AEAIAKWIQDRT-DVQIRVFRSPNYSAAVAFSTLFIILAGFLYIRRNNLEFLYNKQLWAV 694
           A  +A  ++  T  +   V++        AF +  I+ A   + R+  ++   ++++WA 
Sbjct: 138 ASHLAAIVEKHTGKIADIVYKQDQAKRVGAFLSYIIVGAALFFTRKIIVKIFTSRKVWAA 197

Query: 695 CAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP-VYINGGSHGQFVLESYIVAILNGAVVVG 871
             +     + SG M+ +IR  P+  R + G  +++ G    QF  E  +V++L  A+ + 
Sbjct: 198 LTIITVITLSSGYMFTRIRFSPYSQRGEHGENLWLAGSQQFQFGAEVQVVSLLYTALTMS 257

Query: 872 MILMIEAAGGVK 907
            I +   A  V+
Sbjct: 258 SIFLAIVAPKVE 269


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 254 VVMFTAMAPARRCAICQHVNDEYLLVANS-FRFSAAYNNKLFFGIVDFDE 400
           V+ + A A   RC++C  VND Y  ++ S  +  A+ +   F  +  F E
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFVE 138


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 14  YRESXRXRVGIIHKLNMNFKVXXXXXXXXXYYEGAAQPRAKGIEEKVQQLTDITAKKSVI 193
           Y    R  +G     N N ++          Y    Q  +KG++    +LT+ TAK S +
Sbjct: 374 YLNQSRASMGNPSPSNWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPTAKYSQL 433

Query: 194 PLNINKFKE 220
           P NI    E
Sbjct: 434 PNNIANIGE 442


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/75 (18%), Positives = 36/75 (48%)
 Frame = +2

Query: 362 NNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERAGIHAEAIAKWI 541
           +N +  G +D D  SD+     +   P ++ FP    P  ++ + +  A    +++ +++
Sbjct: 71  HNDVLIGKIDADTHSDVADKYHITGFPTLIWFP----PDGSEPVQYSNAR-DVDSLTQFV 125

Query: 542 QDRTDVQIRVFRSPN 586
            ++T ++ R    P+
Sbjct: 126 SEKTGIKKRKIVLPS 140


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 544 LYPLSDGLSMDASSLKV 494
           LYPLSDG ++D S L+V
Sbjct: 315 LYPLSDGETLDTSHLQV 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,409,482
Number of Sequences: 5004
Number of extensions: 93961
Number of successful extensions: 251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)