Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H09
         (1232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0041 - 20169308-20169317,20169485-20170491                       75   1e-13
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    30   3.3  
06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388     29   7.5  
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512...    29   9.9  

>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 12/269 (4%)
 Frame = +2

Query: 116 AAQPRAKGIEEKVQQLTDITAKK--SVIPLNINKFKEYVKSP-PRDYSFVVMFTAMAPAR 286
           AA   + G ++ V +L  + ++    VI L       ++ +P PR YS +V F A +   
Sbjct: 17  AAGAASAGADDLVAELQSLRSRSPSGVIHLTDTSITRFLSAPAPRPYSVLVFFDAASLHS 76

Query: 287 RCAI-CQHVNDEYLLVANSFRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAP-VIMHFP 460
           +  +    +  E+ L++ SF      +  LFF  ++F E    F    +N+ P V +  P
Sbjct: 77  KTDLHLPQLRREFALLSASFLAHNPASADLFFADIEFSESQHSFAQFGVNSLPHVRLVRP 136

Query: 461 AKGKPKPADTMDFERAGIHAEAIAKWIQDRTDVQIR-VFRSPNYSA--AVAFSTLFIILA 631
              +   ++ MD       A+++A++++ RT +++  + R P  S    +    LF++  
Sbjct: 137 EHTRLAGSEQMDQSHFSRLADSMAEFVESRTGLEVGPIVRPPLVSRNQMILLVILFLVSI 196

Query: 632 GFLYIRRNNLEFLYN-KQLWAVCAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP---VYIN 799
            FL  R  + E L++ +++W   A+F  F  VSG M+  IR  P F   ++ P   V+  
Sbjct: 197 PFLIKRIMDGETLFHDRRVWMAGALFIYFFSVSGGMYGIIRHTPMFITDRSDPNKLVFFY 256

Query: 800 GGSHGQFVLESYIVAILNGAVVVGMILMI 886
            GS  Q   E + V  L   V + MI M+
Sbjct: 257 QGSGMQLGAEGFAVGFLYTLVGL-MIAMV 284


>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 137 GIEEKVQQLTDITAKKSVIPLNI 205
           G+E+ VQQLT IT  K V+PL I
Sbjct: 497 GLEDNVQQLTIITRVKEVLPLMI 519


>06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388
          Length = 248

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 477 LGLPLAGKCIITGAVLSRNIWKISEPSSKSTIP 379
           LG P+A    I+G V  +N  ++ EP++  T+P
Sbjct: 56  LGSPIAAAACISGVVGGQNHQQLPEPAAAKTVP 88


>03_06_0514 +
           34450178-34450244,34450821-34451047,34451140-34451275,
           34451818-34451951,34452037-34452142,34452602-34452687,
           34453204-34453365,34453918-34454034,34454222-34454464
          Length = 425

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 315 MNICWWPTHLDSQLL 359
           +++CWWP H  S LL
Sbjct: 8   LSVCWWPPHFKSPLL 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,512,952
Number of Sequences: 37544
Number of extensions: 604914
Number of successful extensions: 1278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)