Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H09
         (1232 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   3.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 907 FNSTCCFNH*DHTHNHSPIQYSNNVTLQYKLSV*SPVYIDRASFCSMEKW 758
           +N+   +N+ ++ +N+  + Y+ N   Q  + V  P+Y       SME W
Sbjct: 334 YNNYNNYNN-NYNNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEPW 382


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 291 VLSVSMLTMNICWWPTHLDSQL 356
           +LS  ++T  ICW P H+   L
Sbjct: 261 MLSAVVITFFICWAPFHVQRLL 282


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
            variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 1047 RNYMDILXLXLDTDKSSEKXTQTNIRPTTDXXLXRFP 937
            R Y D+  L  DT++S      T  R  T     R P
Sbjct: 602  RKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLP 638


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 422 TFGRYLSLHQNQQYQRIIYYCKQ 354
           TFGR  S H N  Y   I + ++
Sbjct: 594 TFGRLTSKHDNSLYDEYIPFLER 616


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
 Frame = -3

Query: 1047 RNYMDILXLXLDTDKSSEKXTQTNIRPTTDXXLXRFPSARVRVGSWFLTPPAA--SIIRI 874
            + Y D L     + +S        + P         P    ++GS  L PPA+  S+   
Sbjct: 47   KQYQDTLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPAT 106

Query: 873  IPTTTAPFSIAT 838
            I TTT   +  T
Sbjct: 107  ITTTTTTTTTTT 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,737
Number of Sequences: 438
Number of extensions: 6874
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)