Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H08
         (1212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.58 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   1.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   7.1  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 618 TSSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY 502
           +S ++K I NNNN  + N+   +YN N N   + K+  Y
Sbjct: 83  SSLSNKTIHNNNNYNNNNY--NNYNYNNNNYNNYKKLYY 119


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 591 NNNNRTDKNHP*KHYNKNLNIKTHLKQTL 505
           N+     KN    HY  + +++THL+ TL
Sbjct: 109 NDPKNQYKNQNNNHYTSHQHLRTHLRGTL 137


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 618 TSSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY*YYSN 487
           +S ++K I NNNN  + N+   +YN N   +  +   +  YY N
Sbjct: 305 SSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGN 348


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 618 TSSTHKIIINNNN-RTDKNHP*KHYNKNLNIKTHLK 514
           +S ++K I NNNN + + N+   + N N N K + K
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 PLDTTALTNITYSPLTETHSTNY 284
           P  T+A     Y+PL E H  +Y
Sbjct: 186 PTVTSACVGSAYTPLKEDHDDHY 208


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 615 SSTHKIIINNNNRTDKNHP*KHYNKNLNIK 526
           ++ +K   NNNN  + N+  K Y   +NI+
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 615 SSTHKIIINNNNRTDKNHP*KHYNKNLNIK 526
           ++ +K   NNNN  + N+  K Y   +NI+
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,431
Number of Sequences: 438
Number of extensions: 3360
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41452344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)