Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H07
         (1245 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    42   4e-05
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           25   4.6  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 26/68 (38%), Positives = 35/68 (51%)
 Frame = -3

Query: 1036 KYLDLAHETTXMWHVDSTIIVPIGMSVHGSIAKRSDQHLKKLSLSSWXRGLIQKAVIFNT 857
            KY DLA E    W+++   IVP+ +S  G +     + L +L L       IQKAVI  T
Sbjct: 1139 KYHDLAEELKQTWYLEDIRIVPVIISATGIVPMALLRSLDELELQR-ELPRIQKAVILRT 1197

Query: 856  ARIVRRFL 833
               +RRFL
Sbjct: 1198 CSTLRRFL 1205


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 626 GENNIKLILRSKNIEKKTNVWHSGT 552
           G++  K+ LRS  +E + N WH+ T
Sbjct: 51  GQSPYKIDLRSLIMEARANKWHNTT 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,925
Number of Sequences: 2352
Number of extensions: 15602
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 142243956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)