Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H07
         (1245 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    29   5.2  
U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical pr...    29   6.8  

>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -2

Query: 767 LVVFKNINFNFFEILKILNLKKYCTINKILNKHNNKRLYLINSFLKKGENNIKLILRSKN 588
           L  +KN+NF    I  + NL K C+       H   R++  N+FL+  E N  + L ++ 
Sbjct: 23  LTGWKNVNFTDENIKHLYNLFKTCS-------HLEIRIFERNNFLENSERNDTMELMTRK 75

Query: 587 IEKKTN 570
           + + +N
Sbjct: 76  LIRVSN 81


>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 743 FNFFEILKILNLKKYCTINKILNKHNNKRLYLINSFLKKGENNIKLI 603
           F+FF+ +KI    K+C  N   N + +  LY  ++ LKK  N +  I
Sbjct: 498 FSFFKEVKIWKGNKFCVRNAYTNCNVDIDLYFESNLLKKVLNTLNKI 544


>U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical
           protein T27A3.2 protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 731 EILKILNLKKYC-TINKILNKHNNKRLYLINSFLKKGENNIKLILRSKNIEKKTNVWH 561
           ++  + NL +    I +I N  + +RL L++S     +  IKLI + +N+E++ N  H
Sbjct: 120 QVKNVQNLPEIAEAIAQIANTTSAERLSLLSSTSNAWDAEIKLITKHQNLEQQDNGKH 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,832,996
Number of Sequences: 27780
Number of extensions: 356196
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)